Wall clock time and date at job start Tue Mar 31 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39726 * 125.77880 * 2 1 4 4 C 1.36156 * 107.86155 * 180.16741 * 3 2 1 5 5 N 1.39366 * 126.26322 * 179.84310 * 4 3 2 6 6 C 1.34772 * 120.00250 * 359.69937 * 5 4 3 7 7 O 1.21565 * 120.00184 * 359.97438 * 6 5 4 8 8 C 1.47823 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.40634 * 119.75704 * 0.02562 * 8 6 5 10 10 C 1.35731 * 120.83307 * 179.97438 * 9 8 6 11 11 C 1.40708 * 120.08275 * 359.97438 * 10 9 8 12 12 N 1.33795 * 120.85586 * 179.97438 * 11 10 9 13 13 C 1.31334 * 119.76281 * 180.02562 * 12 11 10 14 14 C 1.50706 * 119.64221 * 179.72188 * 13 12 11 15 15 C 1.39750 * 120.71653 * 359.97438 * 13 12 11 16 16 C 1.50699 * 119.66775 * 180.02562 * 15 13 12 17 17 N 1.31280 * 120.66749 * 0.02562 * 15 13 12 18 18 C 1.33826 * 119.74070 * 359.97438 * 17 15 13 19 19 C 1.38437 * 119.75705 * 179.97438 * 8 6 5 20 20 N 1.35809 * 107.46510 * 359.58999 * 4 3 2 21 21 C 1.46505 * 126.09076 * 180.22408 * 20 4 3 22 22 C 1.50704 * 109.46769 * 89.99568 * 21 20 4 23 23 H 1.07994 * 120.00156 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99475 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99972 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47308 * 89.99631 * 26 24 22 28 28 H 1.48500 * 109.47450 * 209.99857 * 26 24 22 29 29 H 1.48500 * 109.47118 * 329.99903 * 26 24 22 30 30 N 1.30833 * 125.78030 * 179.70593 * 2 1 3 31 31 H 1.08997 * 109.46503 * 270.27010 * 1 2 3 32 32 H 1.09000 * 109.47107 * 30.26696 * 1 2 3 33 33 H 1.08997 * 109.46870 * 150.26897 * 1 2 3 34 34 H 1.08003 * 126.07231 * 0.02562 * 3 2 1 35 35 H 0.96997 * 119.99688 * 179.69100 * 5 4 3 36 36 H 1.07993 * 119.58438 * 359.94505 * 9 8 6 37 37 H 1.07994 * 119.95683 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.46995 * 89.99928 * 14 13 12 39 39 H 1.08999 * 109.46787 * 209.99486 * 14 13 12 40 40 H 1.08992 * 109.47042 * 330.00058 * 14 13 12 41 41 H 1.08993 * 109.47313 * 89.99935 * 16 15 13 42 42 H 1.09000 * 109.47037 * 210.00340 * 16 15 13 43 43 H 1.09003 * 109.46935 * 330.00175 * 16 15 13 44 44 H 1.07997 * 120.25015 * 0.02562 * 19 8 6 45 45 H 1.08988 * 109.47510 * 209.99859 * 21 20 4 46 46 H 1.09003 * 109.47134 * 330.00321 * 21 20 4 47 47 H 0.96996 * 120.00452 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6195 0.7147 -0.0038 5 7 4.7495 1.5303 -0.0081 6 6 4.6129 2.8711 -0.0150 7 8 3.5040 3.3691 -0.0179 8 6 5.8116 3.7361 -0.0191 9 6 7.0921 3.1546 -0.0163 10 6 8.2074 3.9281 -0.0204 11 6 8.0932 5.3305 -0.0282 12 7 9.1822 6.1077 -0.0318 13 6 9.0506 7.4144 -0.0386 14 6 10.2791 8.2873 -0.0363 15 6 7.7837 8.0042 -0.0425 16 6 7.6602 9.5061 -0.0508 17 7 6.7001 7.2632 -0.0390 18 6 6.8080 5.9293 -0.0322 19 6 5.6655 5.1127 -0.0267 20 7 3.6088 -0.6433 0.0032 21 6 4.7858 -1.5156 0.0069 22 6 5.1904 -1.8073 1.4290 23 1 4.6269 -1.3855 2.2481 24 6 6.2800 -2.6127 1.6843 25 7 6.6328 -2.8677 2.9254 26 14 7.2551 -3.3416 0.2677 27 1 8.3465 -2.4095 -0.1134 28 1 7.8380 -4.6420 0.6853 29 1 6.3560 -3.5528 -0.8952 30 7 2.2720 -1.0614 0.0054 31 1 -0.3632 0.0048 1.0277 32 1 -0.3633 0.8876 -0.5180 33 1 -0.3633 -0.8924 -0.5096 34 1 1.9875 2.1599 0.0004 35 1 5.6344 1.1330 -0.0061 36 1 7.1892 2.0790 -0.0103 37 1 9.1838 3.4665 -0.0178 38 1 10.5806 8.4929 -1.0634 39 1 10.0572 9.2256 0.4720 40 1 11.0881 7.7746 0.4840 41 1 7.6309 9.8626 -1.0804 42 1 6.7431 9.7981 0.4610 43 1 8.5171 9.9440 0.4611 44 1 4.6803 5.5553 -0.0293 45 1 4.5476 -2.4495 -0.5019 46 1 5.6074 -1.0195 -0.5100 47 1 7.3991 -3.4346 3.1051 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058356494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:07 Heat of formation + Delta-G solvation = 114.136247 kcal Electronic energy + Delta-G solvation = -31324.654634 eV Core-core repulsion = 27088.532079 eV Total energy + Delta-G solvation = -4236.122555 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89251 -40.99074 -39.57497 -37.63127 -35.42553 -34.96172 -33.85295 -33.48702 -32.19028 -31.41251 -29.71694 -29.13542 -28.66863 -27.86422 -26.33960 -24.44321 -23.65330 -22.91312 -22.44262 -21.64797 -19.99021 -19.82366 -18.70503 -18.12673 -17.23985 -17.07700 -16.85053 -15.96723 -15.80170 -15.34142 -15.33264 -14.61672 -14.55368 -14.28256 -14.11518 -13.97943 -13.92287 -13.72093 -13.56377 -13.36528 -13.18112 -12.83269 -12.75799 -12.63938 -12.38539 -12.25521 -12.02579 -11.92545 -11.87008 -11.84709 -11.73542 -11.66821 -11.18424 -10.87413 -10.57329 -10.27748 -10.12360 -9.79924 -9.66785 -9.46411 -9.13421 -8.89486 -8.88546 -7.99699 -7.55461 -6.36303 -4.41186 -0.27662 0.07459 1.47400 1.93522 2.50169 2.60295 3.03579 3.13180 3.14516 3.15709 3.46290 3.50093 3.56031 3.68207 3.71997 3.83705 4.11214 4.26407 4.31893 4.39639 4.64086 4.66648 4.82614 4.89299 4.98685 5.04352 5.10793 5.19697 5.25522 5.32416 5.42691 5.49646 5.56118 5.59158 5.71907 5.82740 5.92396 5.98952 6.00301 6.05518 6.16855 6.23612 6.25805 6.32422 6.58586 6.70259 6.92325 7.16558 7.36456 7.37488 7.45050 7.67736 8.06406 8.22921 8.51244 8.70186 9.17960 10.75850 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.002577 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.601429 B =10864.022832 C =13326.463558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.287 4.287 4 C 0.301 3.699 5 N -0.632 5.632 6 C 0.566 3.434 7 O -0.503 6.503 8 C -0.108 4.108 9 C -0.074 4.074 10 C -0.083 4.083 11 C 0.096 3.904 12 N -0.428 5.428 13 C 0.116 3.884 14 C -0.108 4.108 15 C 0.104 3.896 16 C -0.106 4.106 17 N -0.416 5.416 18 C 0.069 3.931 19 C -0.009 4.009 20 N -0.344 5.344 21 C 0.230 3.770 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.882 5.882 26 Si 0.870 3.130 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.263 1.263 30 N -0.278 5.278 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.158 0.842 45 H 0.056 0.944 46 H 0.034 0.966 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 22.832 -8.217 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.318 4.318 4 C 0.080 3.920 5 N -0.279 5.279 6 C 0.353 3.647 7 O -0.378 6.378 8 C -0.113 4.113 9 C -0.094 4.094 10 C -0.102 4.102 11 C -0.027 4.027 12 N -0.142 5.142 13 C -0.041 4.041 14 C -0.165 4.165 15 C -0.053 4.053 16 C -0.164 4.164 17 N -0.130 5.130 18 C -0.054 4.054 19 C -0.029 4.029 20 N -0.130 5.130 21 C 0.111 3.889 22 C -0.585 4.585 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.518 5.518 26 Si 0.696 3.304 27 H -0.196 1.196 28 H -0.203 1.203 29 H -0.187 1.187 30 N -0.103 5.103 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.175 0.825 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.108 21.502 -8.086 23.533 hybrid contribution 1.345 -0.133 -0.431 1.419 sum 6.453 21.369 -8.517 23.892 Atomic orbital electron populations 1.20044 0.87335 1.02431 1.02378 1.22050 0.96642 0.90882 1.01483 1.21298 0.88929 1.00612 1.20994 1.17952 0.87868 0.83060 1.03113 1.42555 1.08435 1.05376 1.71515 1.17914 0.88857 0.80938 0.76991 1.90732 1.25711 1.73767 1.47591 1.19758 0.93029 0.93545 1.04992 1.21136 0.90916 1.01110 0.96264 1.20669 1.00039 0.90116 0.99365 1.19655 0.89161 0.95210 0.98722 1.68582 1.31070 1.04790 1.09780 1.22515 0.96121 0.91304 0.94139 1.20876 0.93667 0.98056 1.03930 1.22442 0.88919 0.98362 0.95557 1.20851 1.04398 0.87252 1.03885 1.68507 1.31564 1.04321 1.08642 1.19359 0.93505 0.90604 1.01972 1.21168 0.98524 0.90933 0.92283 1.49056 1.06188 1.01797 1.55954 1.19946 0.79234 0.90042 0.99716 1.21196 1.14300 1.32719 0.90286 0.90002 1.24822 0.96624 0.95200 0.95773 1.69868 1.26789 1.36598 1.18559 0.86945 0.80791 0.79856 0.82842 1.19590 1.20312 1.18717 1.77352 0.85751 1.21741 1.25465 0.91099 0.91013 0.91464 0.81833 0.74744 0.83915 0.83383 0.89440 0.89493 0.89762 0.89525 0.89772 0.89573 0.82489 0.92626 0.94832 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.08 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -5.75 9.58 -39.77 -0.38 -6.13 16 4 C 0.30 6.21 7.68 -152.75 -1.17 5.04 16 5 N -0.63 -10.83 5.36 -12.21 -0.07 -10.90 16 6 C 0.57 9.06 7.73 -12.34 -0.10 8.97 16 7 O -0.50 -9.09 13.43 5.31 0.07 -9.02 16 8 C -0.11 -1.43 5.87 -105.00 -0.62 -2.05 16 9 C -0.07 -0.85 9.44 -39.58 -0.37 -1.23 16 10 C -0.08 -0.93 9.95 -39.55 -0.39 -1.33 16 11 C 0.10 1.21 6.59 -84.72 -0.56 0.65 16 12 N -0.43 -5.02 10.37 -7.00 -0.07 -5.09 16 13 C 0.12 1.07 6.80 -82.24 -0.56 0.51 16 14 C -0.11 -0.52 9.77 36.01 0.35 -0.17 16 15 C 0.10 0.97 6.79 -82.26 -0.56 0.41 16 16 C -0.11 -0.53 9.77 36.01 0.35 -0.18 16 17 N -0.42 -5.04 10.37 -7.07 -0.07 -5.11 16 18 C 0.07 0.89 6.58 -84.82 -0.56 0.34 16 19 C -0.01 -0.11 9.56 -38.68 -0.37 -0.48 16 20 N -0.34 -7.82 3.62 -61.45 -0.22 -8.04 16 21 C 0.23 5.30 5.09 -5.19 -0.03 5.28 16 22 C -0.55 -14.75 9.94 -34.44 -0.34 -15.09 16 23 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 24 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 25 N -0.88 -25.41 13.96 55.43 0.77 -24.64 16 26 Si 0.87 19.21 27.47 -169.99 -4.67 14.54 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 30 N -0.28 -6.32 12.56 33.64 0.42 -5.90 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.16 3.17 5.83 -52.48 -0.31 2.86 16 35 H 0.41 6.34 5.98 -40.82 -0.24 6.10 16 36 H 0.14 1.44 6.35 -52.49 -0.33 1.10 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.21 5.91 -51.93 -0.31 -0.09 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.22 5.91 -51.93 -0.31 -0.09 16 44 H 0.16 2.00 7.61 -52.49 -0.40 1.60 16 45 H 0.06 1.31 7.20 -51.94 -0.37 0.93 16 46 H 0.03 0.69 6.95 -51.93 -0.36 0.33 16 47 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -34.79 395.28 -9.10 -43.89 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.60 Total: 7.78 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -5.62 Total: -3.46 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.76 Total: -59.68 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.79 -9.10 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058356494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.023 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds