Wall clock time and date at job start Tue Mar 31 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39726 * 125.77880 * 2 1 4 4 C 1.36156 * 107.86155 * 180.16741 * 3 2 1 5 5 N 1.39366 * 126.26322 * 179.84310 * 4 3 2 6 6 C 1.34772 * 120.00250 * 359.69937 * 5 4 3 7 7 O 1.21565 * 120.00184 * 359.97438 * 6 5 4 8 8 C 1.47823 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.40634 * 119.75704 * 0.02562 * 8 6 5 10 10 C 1.35731 * 120.83307 * 179.97438 * 9 8 6 11 11 C 1.40708 * 120.08275 * 359.97438 * 10 9 8 12 12 N 1.33795 * 120.85586 * 179.97438 * 11 10 9 13 13 C 1.31334 * 119.76281 * 180.02562 * 12 11 10 14 14 C 1.50706 * 119.64221 * 179.72188 * 13 12 11 15 15 C 1.39750 * 120.71653 * 359.97438 * 13 12 11 16 16 C 1.50699 * 119.66775 * 180.02562 * 15 13 12 17 17 N 1.31280 * 120.66749 * 0.02562 * 15 13 12 18 18 C 1.33826 * 119.74070 * 359.97438 * 17 15 13 19 19 C 1.38437 * 119.75705 * 179.97438 * 8 6 5 20 20 N 1.35809 * 107.46510 * 359.58999 * 4 3 2 21 21 C 1.46505 * 126.09076 * 180.22408 * 20 4 3 22 22 C 1.50704 * 109.46769 * 89.99568 * 21 20 4 23 23 H 1.07994 * 120.00156 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99475 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99972 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47308 * 89.99631 * 26 24 22 28 28 H 1.48500 * 109.47450 * 209.99857 * 26 24 22 29 29 H 1.48500 * 109.47118 * 329.99903 * 26 24 22 30 30 N 1.30833 * 125.78030 * 179.70593 * 2 1 3 31 31 H 1.08997 * 109.46503 * 270.27010 * 1 2 3 32 32 H 1.09000 * 109.47107 * 30.26696 * 1 2 3 33 33 H 1.08997 * 109.46870 * 150.26897 * 1 2 3 34 34 H 1.08003 * 126.07231 * 0.02562 * 3 2 1 35 35 H 0.96997 * 119.99688 * 179.69100 * 5 4 3 36 36 H 1.07993 * 119.58438 * 359.94505 * 9 8 6 37 37 H 1.07994 * 119.95683 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.46995 * 89.99928 * 14 13 12 39 39 H 1.08999 * 109.46787 * 209.99486 * 14 13 12 40 40 H 1.08992 * 109.47042 * 330.00058 * 14 13 12 41 41 H 1.08993 * 109.47313 * 89.99935 * 16 15 13 42 42 H 1.09000 * 109.47037 * 210.00340 * 16 15 13 43 43 H 1.09003 * 109.46935 * 330.00175 * 16 15 13 44 44 H 1.07997 * 120.25015 * 0.02562 * 19 8 6 45 45 H 1.08988 * 109.47510 * 209.99859 * 21 20 4 46 46 H 1.09003 * 109.47134 * 330.00321 * 21 20 4 47 47 H 0.96996 * 120.00452 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6195 0.7147 -0.0038 5 7 4.7495 1.5303 -0.0081 6 6 4.6129 2.8711 -0.0150 7 8 3.5040 3.3691 -0.0179 8 6 5.8116 3.7361 -0.0191 9 6 7.0921 3.1546 -0.0163 10 6 8.2074 3.9281 -0.0204 11 6 8.0932 5.3305 -0.0282 12 7 9.1822 6.1077 -0.0318 13 6 9.0506 7.4144 -0.0386 14 6 10.2791 8.2873 -0.0363 15 6 7.7837 8.0042 -0.0425 16 6 7.6602 9.5061 -0.0508 17 7 6.7001 7.2632 -0.0390 18 6 6.8080 5.9293 -0.0322 19 6 5.6655 5.1127 -0.0267 20 7 3.6088 -0.6433 0.0032 21 6 4.7858 -1.5156 0.0069 22 6 5.1904 -1.8073 1.4290 23 1 4.6269 -1.3855 2.2481 24 6 6.2800 -2.6127 1.6843 25 7 6.6328 -2.8677 2.9254 26 14 7.2551 -3.3416 0.2677 27 1 8.3465 -2.4095 -0.1134 28 1 7.8380 -4.6420 0.6853 29 1 6.3560 -3.5528 -0.8952 30 7 2.2720 -1.0614 0.0054 31 1 -0.3632 0.0048 1.0277 32 1 -0.3633 0.8876 -0.5180 33 1 -0.3633 -0.8924 -0.5096 34 1 1.9875 2.1599 0.0004 35 1 5.6344 1.1330 -0.0061 36 1 7.1892 2.0790 -0.0103 37 1 9.1838 3.4665 -0.0178 38 1 10.5806 8.4929 -1.0634 39 1 10.0572 9.2256 0.4720 40 1 11.0881 7.7746 0.4840 41 1 7.6309 9.8626 -1.0804 42 1 6.7431 9.7981 0.4610 43 1 8.5171 9.9440 0.4611 44 1 4.6803 5.5553 -0.0293 45 1 4.5476 -2.4495 -0.5019 46 1 5.6074 -1.0195 -0.5100 47 1 7.3991 -3.4346 3.1051 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058356494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:06 Heat of formation + Delta-G solvation = 90.851800 kcal Electronic energy + Delta-G solvation = -31325.664323 eV Core-core repulsion = 27088.532079 eV Total energy + Delta-G solvation = -4237.132245 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.79421 -42.42950 -40.90035 -38.59254 -36.47598 -36.19053 -35.64648 -34.28404 -33.96877 -32.26782 -31.22192 -30.39793 -29.29272 -29.01273 -28.02145 -25.45152 -24.39837 -24.35315 -23.69137 -22.85292 -21.42246 -21.23111 -19.61634 -19.27945 -19.21851 -18.44117 -18.02163 -16.91585 -16.81947 -16.78976 -16.61574 -16.19312 -15.68791 -15.51195 -15.46016 -14.93490 -14.82758 -14.77255 -14.43856 -14.32970 -14.18070 -14.01313 -13.88810 -13.80180 -13.57389 -13.53210 -13.17092 -12.97904 -12.91109 -12.84184 -12.56047 -12.54237 -12.49080 -12.32469 -12.17606 -11.89908 -11.82418 -11.59615 -11.16635 -10.91997 -10.26699 -9.96806 -9.80752 -9.64774 -9.14050 -8.43009 -6.56056 -1.18093 -0.76874 0.47989 0.81303 1.11644 1.28932 1.32446 1.38100 1.47034 1.80678 2.04559 2.10735 2.24271 2.74970 2.78530 2.87871 2.88332 3.03345 3.21414 3.51710 3.65272 3.74033 3.76277 3.86660 4.10894 4.13014 4.39017 4.43574 4.47842 4.55551 4.63766 4.66034 4.72011 4.75037 4.78433 4.81294 4.84712 4.88206 4.89511 4.97284 4.98327 5.09711 5.10687 5.17392 5.20352 5.30196 5.49357 5.84045 5.92145 6.06982 6.13447 6.26358 6.48207 6.57011 6.74094 6.91786 7.08897 8.73412 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.002577 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.601429 B =10864.022832 C =13326.463558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.061 3.939 3 C -0.300 4.300 4 C 0.298 3.702 5 N -0.629 5.629 6 C 0.570 3.430 7 O -0.527 6.527 8 C -0.116 4.116 9 C -0.076 4.076 10 C -0.079 4.079 11 C 0.082 3.918 12 N -0.450 5.450 13 C 0.121 3.879 14 C -0.107 4.107 15 C 0.107 3.893 16 C -0.106 4.106 17 N -0.444 5.444 18 C 0.049 3.951 19 C -0.010 4.010 20 N -0.366 5.366 21 C 0.237 3.763 22 C -0.554 4.554 23 H 0.022 0.978 24 C 0.026 3.974 25 N -0.934 5.934 26 Si 0.947 3.053 27 H -0.241 1.241 28 H -0.280 1.280 29 H -0.247 1.247 30 N -0.322 5.322 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.422 0.578 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.151 0.849 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.774 25.063 -10.178 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.332 4.332 4 C 0.076 3.924 5 N -0.277 5.277 6 C 0.359 3.641 7 O -0.403 6.403 8 C -0.121 4.121 9 C -0.096 4.096 10 C -0.098 4.098 11 C -0.041 4.041 12 N -0.165 5.165 13 C -0.036 4.036 14 C -0.164 4.164 15 C -0.050 4.050 16 C -0.163 4.163 17 N -0.159 5.159 18 C -0.073 4.073 19 C -0.031 4.031 20 N -0.152 5.152 21 C 0.118 3.882 22 C -0.592 4.592 23 H 0.041 0.959 24 C -0.175 4.175 25 N -0.572 5.572 26 Si 0.767 3.233 27 H -0.165 1.165 28 H -0.206 1.206 29 H -0.170 1.170 30 N -0.146 5.146 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.187 0.813 35 H 0.262 0.738 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.169 0.831 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.197 23.740 -10.053 26.766 hybrid contribution 0.699 -0.527 0.276 0.918 sum 7.896 23.212 -9.777 26.396 Atomic orbital electron populations 1.20248 0.83778 1.04295 1.03697 1.22879 0.98823 0.89912 0.98826 1.21524 0.89067 1.01028 1.21588 1.18303 0.89230 0.82776 1.02045 1.42636 1.07965 1.05513 1.71627 1.18342 0.89478 0.80544 0.75741 1.90699 1.26947 1.74014 1.48641 1.19506 0.92476 0.93111 1.06975 1.21209 0.90221 1.01782 0.96394 1.20869 1.00610 0.89842 0.98494 1.19868 0.89365 0.95923 0.98945 1.68672 1.30628 1.06013 1.11207 1.23349 0.97815 0.91026 0.91432 1.21092 0.91481 0.98301 1.05496 1.23268 0.88392 1.00279 0.93108 1.21064 1.05734 0.84053 1.05411 1.68549 1.33100 1.04101 1.10190 1.19408 0.93542 0.91276 1.03061 1.21139 0.98614 0.90964 0.92342 1.48986 1.06165 1.02408 1.57630 1.19785 0.80520 0.90746 0.97197 1.21210 1.14130 1.32997 0.90905 0.95937 1.25821 0.97562 0.95125 0.98963 1.70032 1.27833 1.37749 1.21553 0.85741 0.79632 0.79004 0.78890 1.16504 1.20583 1.17031 1.77292 0.86168 1.23419 1.27751 0.89894 0.88406 0.90335 0.81271 0.73842 0.82604 0.81562 0.87502 0.86425 0.89831 0.87684 0.90107 0.86341 0.83124 0.92817 0.91491 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.44 71.24 0.74 -0.97 16 2 C 0.06 2.43 7.20 43.07 0.31 2.74 16 3 C -0.30 -12.26 9.58 22.14 0.21 -12.05 16 4 C 0.30 12.56 7.68 131.19 1.01 13.57 16 5 N -0.63 -22.02 5.36 -310.81 -1.67 -23.69 16 6 C 0.57 18.79 7.73 86.78 0.67 19.46 16 7 O -0.53 -19.66 13.43 -3.92 -0.05 -19.71 16 8 C -0.12 -3.15 5.87 -20.11 -0.12 -3.26 16 9 C -0.08 -1.74 9.44 22.27 0.21 -1.53 16 10 C -0.08 -1.74 9.95 22.29 0.22 -1.52 16 11 C 0.08 2.02 6.59 40.32 0.27 2.29 16 12 N -0.45 -9.96 10.37 -176.04 -1.83 -11.79 16 13 C 0.12 1.94 6.80 43.00 0.29 2.24 16 14 C -0.11 -0.63 9.77 71.24 0.70 0.07 16 15 C 0.11 1.79 6.79 43.01 0.29 2.08 16 16 C -0.11 -0.70 9.77 71.24 0.70 -0.01 16 17 N -0.44 -10.58 10.37 -176.28 -1.83 -12.41 16 18 C 0.05 1.29 6.58 40.25 0.27 1.55 16 19 C -0.01 -0.28 9.56 22.85 0.22 -0.06 16 20 N -0.37 -17.00 3.62 -348.32 -1.26 -18.26 16 21 C 0.24 11.01 5.09 85.63 0.44 11.44 16 22 C -0.55 -30.99 9.94 25.60 0.25 -30.73 16 23 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 24 C 0.03 1.40 5.47 84.66 0.46 1.86 16 25 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 26 Si 0.95 38.96 27.47 68.60 1.88 40.84 16 27 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.25 -9.48 6.54 99.48 0.65 -8.83 16 30 N -0.32 -14.93 12.56 -47.47 -0.60 -15.53 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.17 6.66 5.83 -2.91 -0.02 6.64 16 35 H 0.42 13.01 5.98 -92.71 -0.55 12.45 16 36 H 0.16 3.05 6.35 -2.91 -0.02 3.03 16 37 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.12 -0.03 5.91 -2.39 -0.01 -0.04 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.12 0.02 5.91 -2.39 -0.01 0.00 16 44 H 0.15 4.11 7.61 -2.91 -0.02 4.09 16 45 H 0.05 2.50 7.20 -2.39 -0.02 2.48 16 46 H 0.07 2.64 6.95 -2.39 -0.02 2.62 16 47 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -80.92 395.28 2.53 -78.39 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.44 Total: 30.18 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 7.14 Total: 7.16 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -6.88 Total: -136.87 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.88 Total: 40.84 kcal Total: -80.92 2.53 -78.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058356494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.239 kcal (2) G-P(sol) polarization free energy of solvation -80.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds