Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47505 * 2 1 4 4 C 1.32996 * 119.99901 * 126.43275 * 3 2 1 5 5 C 1.50699 * 120.00407 * 177.36980 * 4 3 2 6 6 C 1.47101 * 119.99793 * 357.37189 * 4 3 2 7 7 O 1.21615 * 120.00277 * 262.29108 * 6 4 3 8 8 N 1.34775 * 120.00084 * 82.29458 * 6 4 3 9 9 C 1.47602 * 122.43185 * 3.53421 * 8 6 4 10 10 S 1.84333 * 102.52099 * 155.11501 * 9 8 6 11 11 C 1.84215 * 93.82722 * 33.71270 * 10 9 8 12 12 C 1.45508 * 122.43036 * 183.82469 * 8 6 4 13 13 H 1.09003 * 108.75054 * 302.04308 * 12 8 6 14 14 C 1.50696 * 108.75719 * 60.10794 * 12 8 6 15 15 O 1.21280 * 119.99772 * 22.19267 * 14 12 8 16 16 N 1.34774 * 119.99950 * 202.20069 * 14 12 8 17 17 C 1.46500 * 120.00233 * 3.39196 * 16 14 12 18 18 C 1.50698 * 109.47082 * 90.55694 * 17 16 14 19 19 H 1.07998 * 120.00209 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99890 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00222 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47262 * 59.99902 * 22 20 18 24 24 H 1.48500 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46712 * 299.99878 * 22 20 18 26 26 C 1.46500 * 119.99917 * 183.39308 * 16 14 12 27 27 C 1.53003 * 109.47293 * 93.36170 * 26 16 14 28 28 C 1.47195 * 109.47277 * 179.97438 * 27 26 16 29 29 N 7.96394 * 84.32054 * 144.94455 * 2 1 3 30 30 H 1.09004 * 109.47069 * 300.00117 * 1 2 3 31 31 H 1.09006 * 109.46658 * 59.99255 * 1 2 3 32 32 H 1.08993 * 109.47758 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46798 * 240.00301 * 2 1 3 34 34 H 1.08995 * 109.46977 * 120.00377 * 2 1 3 35 35 H 1.07998 * 120.00502 * 306.71611 * 3 2 1 36 36 H 1.08992 * 109.46937 * 94.77551 * 5 4 3 37 37 H 1.08999 * 109.47479 * 214.78346 * 5 4 3 38 38 H 1.09008 * 109.46577 * 334.77817 * 5 4 3 39 39 H 1.09007 * 110.77764 * 273.47834 * 9 8 6 40 40 H 1.09003 * 110.77716 * 36.90301 * 9 8 6 41 41 H 1.08992 * 111.05028 * 209.57649 * 11 10 9 42 42 H 1.09000 * 111.04974 * 85.59788 * 11 10 9 43 43 H 1.08996 * 109.47120 * 210.56590 * 17 16 14 44 44 H 1.09003 * 109.46818 * 330.55774 * 17 16 14 45 45 H 0.96994 * 120.00517 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.47135 * 213.36533 * 26 16 14 47 47 H 1.09001 * 109.47270 * 333.36578 * 26 16 14 48 48 H 1.08999 * 109.47326 * 300.00245 * 27 26 16 49 49 H 1.09001 * 109.46629 * 60.00016 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8990 1.8196 0.9267 5 6 3.4469 3.2230 0.8918 6 6 3.3227 0.8908 1.9857 7 8 2.7903 0.9307 3.0784 8 7 4.3010 -0.0044 1.7452 9 6 5.0356 -0.0496 0.4658 10 16 6.6339 -0.8299 0.9499 11 6 5.8636 -1.8998 2.2366 12 6 4.7056 -1.0005 2.7257 13 1 5.0194 -0.4892 3.6358 14 6 3.5192 -1.8716 3.0494 15 8 2.5979 -1.9572 2.2653 16 7 3.4820 -2.5554 4.2102 17 6 4.5591 -2.3945 5.1900 18 6 4.2102 -1.2790 6.1414 19 1 3.2791 -0.7438 6.0278 20 6 5.0793 -0.9425 7.1575 21 7 6.2130 -1.5946 7.2961 22 14 4.6466 0.4396 8.3372 23 1 3.3812 0.1113 9.0416 24 1 5.7385 0.6028 9.3304 25 1 4.4764 1.7041 7.5771 26 6 2.3644 -3.4596 4.4921 27 6 2.7314 -4.8776 4.0498 28 6 1.6088 -5.7862 4.3336 29 7 0.7419 -6.4872 4.5518 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6853 2.1163 -0.7497 36 1 2.8499 3.8624 1.5419 37 1 4.4808 3.2182 1.2368 38 1 3.4063 3.6036 -0.1289 39 1 4.5071 -0.6653 -0.2621 40 1 5.1984 0.9559 0.0776 41 1 6.5654 -2.1082 3.0440 42 1 5.4844 -2.8244 1.8013 43 1 4.6843 -3.3223 5.7481 44 1 5.4879 -2.1536 4.6727 45 1 6.8242 -1.3581 8.0111 46 1 2.1546 -3.4555 5.5617 47 1 1.4810 -3.1264 3.9474 48 1 2.9412 -4.8817 2.9802 49 1 3.6148 -5.2108 4.5945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058432301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -35.542291 kcal Electronic energy + Delta-G solvation = -32579.435993 eV Core-core repulsion = 28439.974090 eV Total energy + Delta-G solvation = -4139.461903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.88801 -40.32760 -38.02275 -37.17115 -36.78569 -36.75875 -34.72194 -33.40500 -32.90339 -31.60904 -29.05468 -28.43164 -27.87166 -26.16486 -25.35731 -24.81295 -23.26214 -22.46416 -20.40892 -19.30097 -19.00864 -18.55506 -18.39442 -18.15135 -17.24531 -16.92648 -16.80634 -16.29434 -16.19525 -15.96646 -15.70719 -15.31191 -15.14835 -15.00340 -14.59285 -14.43187 -14.37260 -14.13465 -14.02289 -13.94238 -13.71688 -13.63622 -13.58883 -13.41677 -13.31334 -13.09201 -12.99022 -12.95063 -12.87742 -12.73092 -12.57278 -12.18556 -11.97666 -11.93506 -11.83809 -11.77917 -11.67833 -10.99445 -10.73183 -10.54922 -9.91600 -9.85160 -9.53681 -8.90754 -8.20667 -6.29903 0.56200 0.80107 0.87039 1.37279 1.39795 1.42668 1.48819 1.57173 1.62864 1.76602 1.82503 2.29736 2.42814 3.10351 3.13470 3.20989 3.51169 3.60060 3.86710 3.97737 4.06350 4.10660 4.13006 4.21682 4.28356 4.39905 4.42487 4.51464 4.52000 4.58211 4.60900 4.76929 4.79061 4.82216 4.92834 4.98418 4.99378 5.02908 5.11313 5.25561 5.27743 5.31032 5.48974 5.65476 5.70473 5.83962 6.08506 6.09244 6.50334 6.53201 6.80900 7.01301 7.25729 7.41785 8.83778 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.006687 B = 0.004593 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4186.148014 B = 6094.538833 C = 7587.561009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C -0.083 4.083 4 C -0.189 4.189 5 C -0.099 4.099 6 C 0.572 3.428 7 O -0.571 6.571 8 N -0.595 5.595 9 C 0.161 3.839 10 S -0.260 6.260 11 C -0.050 4.050 12 C 0.115 3.885 13 H 0.090 0.910 14 C 0.520 3.480 15 O -0.563 6.563 16 N -0.589 5.589 17 C 0.247 3.753 18 C -0.545 4.545 19 H 0.035 0.965 20 C 0.036 3.964 21 N -0.907 5.907 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.287 1.287 26 C 0.124 3.876 27 C -0.027 4.027 28 C 0.244 3.756 29 N -0.490 5.490 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.162 0.838 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.268 0.732 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.127 0.873 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 3.334 -18.817 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C -0.101 4.101 4 C -0.192 4.192 5 C -0.156 4.156 6 C 0.361 3.639 7 O -0.449 6.449 8 N -0.329 5.329 9 C -0.071 4.071 10 S -0.033 6.033 11 C -0.198 4.198 12 C 0.005 3.995 13 H 0.108 0.892 14 C 0.306 3.694 15 O -0.444 6.444 16 N -0.319 5.319 17 C 0.127 3.873 18 C -0.584 4.584 19 H 0.054 0.946 20 C -0.166 4.166 21 N -0.546 5.546 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.068 4.068 28 C -0.074 4.074 29 N -0.168 5.168 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.145 0.855 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.002 2.407 -18.571 18.726 hybrid contribution -1.073 0.851 1.924 2.361 sum -1.071 3.257 -16.647 16.996 Atomic orbital electron populations 1.21569 0.94516 1.01596 1.01655 1.21076 0.97184 0.94487 1.03960 1.23691 0.92956 0.97508 0.95991 1.21502 1.04156 0.97451 0.96069 1.20712 1.00486 0.89720 1.04648 1.19023 0.77246 0.79593 0.88009 1.90880 1.55387 1.71709 1.26933 1.48322 1.37391 1.32055 1.15172 1.24485 0.89336 1.06244 0.87031 1.88270 1.14735 1.51918 1.48419 1.24439 0.96421 0.98945 1.00024 1.21158 0.93647 0.90366 0.94291 0.89171 1.20652 0.87856 0.79469 0.81446 1.90523 1.38382 1.65494 1.49965 1.48002 1.24476 1.42103 1.17348 1.19305 0.84958 0.96657 0.86387 1.21600 1.04575 1.18390 1.13801 0.94618 1.25306 0.94931 0.97895 0.98420 1.69905 1.09935 1.41494 1.33234 0.85996 0.78058 0.80503 0.79398 1.20266 1.19920 1.21282 1.21135 0.89702 0.87536 1.01762 1.19695 0.91817 0.89406 1.05863 1.29253 0.93713 0.92922 0.91471 1.81209 1.12277 1.12269 1.11013 0.94893 0.90228 0.93036 0.88907 0.91495 0.82038 0.91720 0.91997 0.87346 0.86891 0.84420 0.84651 0.86041 0.93730 0.93742 0.92268 0.90230 0.91081 0.85492 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.89 71.98 0.71 -2.30 16 2 C -0.13 -3.05 6.20 29.85 0.19 -2.87 16 3 C -0.08 -1.64 9.19 24.52 0.23 -1.41 16 4 C -0.19 -4.62 4.34 -18.70 -0.08 -4.70 16 5 C -0.10 -1.80 10.04 71.24 0.71 -1.08 16 6 C 0.57 19.86 4.55 86.57 0.39 20.25 16 7 O -0.57 -26.74 16.54 -4.08 -0.07 -26.81 16 8 N -0.59 -18.09 2.58 -811.26 -2.09 -20.18 16 9 C 0.16 3.40 7.18 127.56 0.92 4.32 16 10 S -0.26 -6.00 23.44 -56.49 -1.32 -7.32 16 11 C -0.05 -1.27 6.45 72.51 0.47 -0.80 16 12 C 0.11 3.86 2.06 44.96 0.09 3.96 16 13 H 0.09 3.81 6.67 -2.39 -0.02 3.80 16 14 C 0.52 19.02 5.69 87.66 0.50 19.52 16 15 O -0.56 -21.65 13.21 -3.03 -0.04 -21.69 16 16 N -0.59 -21.40 2.46 -826.16 -2.03 -23.43 16 17 C 0.25 10.27 4.79 85.63 0.41 10.68 16 18 C -0.54 -27.78 9.03 25.60 0.23 -27.55 16 19 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16 20 C 0.04 1.85 5.46 84.65 0.46 2.31 16 21 N -0.91 -47.05 13.29 21.45 0.28 -46.77 16 22 Si 0.93 43.08 29.54 68.60 2.03 45.11 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 C 0.12 3.89 5.43 86.38 0.47 4.36 16 27 C -0.03 -0.61 6.03 28.79 0.17 -0.44 16 28 C 0.24 6.56 15.43 89.44 1.38 7.94 16 29 N -0.49 -15.86 18.54 20.00 0.37 -15.48 16 30 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 2.15 3.70 -2.39 -0.01 2.14 16 35 H 0.16 1.93 8.04 -2.91 -0.02 1.91 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.14 8.02 -2.38 -0.02 1.12 16 39 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.14 2.24 7.54 -2.39 -0.02 2.23 16 41 H 0.14 3.48 7.03 -2.39 -0.02 3.46 16 42 H 0.12 2.63 7.85 -2.39 -0.02 2.61 16 43 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 44 H 0.04 1.82 4.94 -2.39 -0.01 1.81 16 45 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 46 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 47 H 0.07 2.42 7.28 -2.39 -0.02 2.40 16 48 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -71.24 419.28 5.34 -65.90 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.96 Total: 18.48 kcal Atomic # 6 Polarization: 24.94 SS G_CDS: 7.25 Total: 32.19 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -3.47 Total: -105.86 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.11 Total: -48.50 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.32 Total: -7.32 kcal Total: -71.24 5.34 -65.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058432301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.353 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds