Wall clock time and date at job start Tue Mar 31 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46828 * 2 1 4 4 C 1.32998 * 120.00276 * 121.39273 * 3 2 1 5 5 C 1.50699 * 119.99877 * 185.55460 * 4 3 2 6 6 C 1.47101 * 119.99849 * 5.55736 * 4 3 2 7 7 O 1.21606 * 119.99963 * 260.91007 * 6 4 3 8 8 N 1.34776 * 119.99748 * 80.91299 * 6 4 3 9 9 C 1.47057 * 122.50263 * 354.96006 * 8 6 4 10 10 S 1.83558 * 105.07495 * 175.88681 * 9 8 6 11 11 C 1.84483 * 94.78481 * 341.58998 * 10 9 8 12 12 C 1.46139 * 122.49736 * 174.94390 * 8 6 4 13 13 H 1.08997 * 109.46912 * 90.77849 * 12 8 6 14 14 C 1.50703 * 109.46714 * 330.78754 * 12 8 6 15 15 O 1.21278 * 120.00197 * 323.88005 * 14 12 8 16 16 N 1.34773 * 119.99692 * 143.87447 * 14 12 8 17 17 C 1.46497 * 120.00210 * 5.13475 * 16 14 12 18 18 C 1.50697 * 109.47480 * 84.55729 * 17 16 14 19 19 H 1.08003 * 120.00076 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00354 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46855 * 60.00157 * 22 20 18 24 24 H 1.48498 * 109.46904 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47481 * 300.00175 * 22 20 18 26 26 C 1.46502 * 119.99788 * 185.12941 * 16 14 12 27 27 C 1.53004 * 109.47081 * 94.76928 * 26 16 14 28 28 C 1.47202 * 109.46962 * 184.71479 * 27 26 16 29 29 N 8.96534 * 93.85396 * 84.08078 * 2 1 3 30 30 H 1.08998 * 109.47400 * 299.99969 * 1 2 3 31 31 H 1.09002 * 109.47009 * 60.00671 * 1 2 3 32 32 H 1.09005 * 109.46654 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47566 * 239.99502 * 2 1 3 34 34 H 1.09002 * 109.47009 * 119.99329 * 2 1 3 35 35 H 1.08008 * 119.99881 * 301.39438 * 3 2 1 36 36 H 1.09000 * 109.47463 * 275.04659 * 5 4 3 37 37 H 1.08995 * 109.47150 * 35.05022 * 5 4 3 38 38 H 1.08998 * 109.46543 * 155.05106 * 5 4 3 39 39 H 1.09002 * 110.34221 * 294.82022 * 9 8 6 40 40 H 1.09004 * 110.33972 * 56.95803 * 9 8 6 41 41 H 1.09002 * 111.26668 * 275.42093 * 11 10 9 42 42 H 1.09000 * 111.42399 * 150.73782 * 11 10 9 43 43 H 1.08998 * 109.47350 * 204.55748 * 17 16 14 44 44 H 1.09004 * 109.46857 * 324.55622 * 17 16 14 45 45 H 0.96996 * 120.00361 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46967 * 214.76121 * 26 16 14 47 47 H 1.08993 * 109.47236 * 334.76323 * 26 16 14 48 48 H 1.09000 * 109.46355 * 304.71270 * 27 26 16 49 49 H 1.08994 * 109.47189 * 64.70911 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8196 1.8479 0.9832 5 6 3.2199 3.2992 1.0515 6 6 3.2997 0.9036 2.0038 7 8 2.7432 0.8402 3.0832 8 7 4.3564 0.1089 1.7426 9 6 5.0024 0.0617 0.4224 10 16 6.4397 -1.0603 0.6340 11 6 6.4666 -0.9305 2.4741 12 6 4.9459 -0.7701 2.7504 13 1 4.4643 -1.7469 2.7069 14 6 4.7444 -0.1713 4.1187 15 8 4.7988 1.0309 4.2685 16 7 4.5038 -0.9720 5.1758 17 6 4.5493 -2.4277 5.0175 18 6 5.9727 -2.9035 5.1527 19 1 6.7645 -2.1926 5.3376 20 6 6.2646 -4.2462 5.0394 21 7 5.3005 -5.1119 4.8137 22 14 8.0292 -4.8359 5.2062 23 1 8.5493 -4.4677 6.5476 24 1 8.0752 -6.3115 5.0459 25 1 8.8657 -4.1973 4.1586 26 6 4.1968 -0.3865 6.4832 27 6 2.6794 -0.3010 6.6600 28 6 2.3708 0.3896 7.9229 29 7 2.1326 0.9225 8.8974 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.7529 2.0924 -0.7984 36 1 4.0927 3.4655 0.4202 37 1 2.3952 3.9203 0.7023 38 1 3.4613 3.5612 2.0816 39 1 4.3147 -0.3399 -0.3219 40 1 5.3383 1.0563 0.1291 41 1 7.0240 -0.0524 2.8003 42 1 6.8594 -1.8385 2.9316 43 1 3.9350 -2.8961 5.7865 44 1 4.1677 -2.6982 4.0329 45 1 5.5057 -6.0566 4.7343 46 1 4.6194 -1.0119 7.2696 47 1 4.6266 0.6133 6.5435 48 1 2.2474 0.2542 5.8274 49 1 2.2591 -1.3063 6.6834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058432303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:04 Heat of formation + Delta-G solvation = -17.156972 kcal Electronic energy + Delta-G solvation = -32500.711115 eV Core-core repulsion = 28362.046458 eV Total energy + Delta-G solvation = -4138.664656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.63472 -38.84128 -36.69149 -35.94884 -35.79313 -35.14108 -32.98522 -32.40723 -31.55310 -30.29328 -27.37855 -27.24279 -27.10614 -25.01686 -23.85259 -23.19209 -22.42421 -21.37215 -19.29194 -17.95165 -17.40817 -17.14623 -16.92205 -16.55010 -16.25548 -15.66851 -15.32695 -15.01298 -14.92215 -14.64519 -14.38733 -14.21141 -13.94924 -13.82067 -13.37885 -13.29642 -13.16294 -13.04387 -12.91815 -12.61157 -12.39024 -12.38867 -12.25234 -12.20299 -12.07398 -12.03311 -11.89637 -11.64149 -11.33425 -11.20396 -11.11389 -11.07772 -10.83722 -10.62279 -10.53754 -10.23375 -9.90882 -9.70711 -9.28586 -9.03299 -8.78238 -8.54548 -7.90242 -7.75903 -6.30487 -4.39428 1.61460 1.66253 2.07600 2.56281 2.83852 2.97398 3.02520 3.16464 3.23400 3.24558 3.36712 3.68659 4.22364 4.31238 4.46431 4.62277 4.77568 4.88846 5.00447 5.02660 5.10175 5.11693 5.16201 5.26136 5.30169 5.32068 5.41117 5.44622 5.47717 5.56570 5.68675 5.78963 5.82097 5.84713 5.88706 5.97227 6.02745 6.12640 6.18986 6.29708 6.32371 6.46711 6.58448 7.03771 7.23582 7.35831 7.63615 7.78063 7.90750 8.13344 8.19109 8.65004 8.86353 9.29374 10.75806 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.007330 B = 0.004529 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.997162 B = 6181.221142 C = 8432.557711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.154 4.154 5 C -0.103 4.103 6 C 0.576 3.424 7 O -0.503 6.503 8 N -0.605 5.605 9 C 0.157 3.843 10 S -0.268 6.268 11 C -0.052 4.052 12 C 0.118 3.882 13 H 0.119 0.881 14 C 0.540 3.460 15 O -0.549 6.549 16 N -0.590 5.590 17 C 0.234 3.766 18 C -0.547 4.547 19 H 0.063 0.937 20 C 0.071 3.929 21 N -0.884 5.884 22 Si 0.891 3.109 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.131 3.869 27 C -0.047 4.047 28 C 0.224 3.776 29 N -0.454 5.454 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.150 0.850 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.268 0.732 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 8.455 -12.857 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.138 4.138 4 C -0.157 4.157 5 C -0.160 4.160 6 C 0.364 3.636 7 O -0.376 6.376 8 N -0.342 5.342 9 C -0.077 4.077 10 S -0.041 6.041 11 C -0.201 4.201 12 C 0.011 3.989 13 H 0.136 0.864 14 C 0.325 3.675 15 O -0.428 6.428 16 N -0.321 5.321 17 C 0.114 3.886 18 C -0.585 4.585 19 H 0.081 0.919 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.719 3.281 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.005 3.995 27 C -0.088 4.088 28 C -0.094 4.094 29 N -0.132 5.132 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.168 0.832 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.133 0.867 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.197 9.014 -11.560 15.248 hybrid contribution 0.472 -0.252 0.358 0.644 sum -3.725 8.762 -11.202 14.702 Atomic orbital electron populations 1.21649 0.94345 1.02057 1.01983 1.20779 0.96903 0.93799 1.02910 1.23342 0.96441 0.97759 0.96274 1.21503 1.01845 0.96570 0.95832 1.20650 1.01570 0.90323 1.03498 1.18134 0.78939 0.79252 0.87309 1.90818 1.55486 1.67163 1.24159 1.48230 1.32146 1.43707 1.10126 1.23811 0.94713 1.01723 0.87437 1.88199 1.41293 1.63131 1.11474 1.24841 0.95893 1.08725 0.90592 1.21861 0.93937 0.95459 0.87676 0.86376 1.19635 0.76094 0.86375 0.85415 1.90614 1.52110 1.14848 1.85180 1.47962 1.67513 1.09248 1.07346 1.19546 0.97837 0.72713 0.98470 1.21428 0.92993 0.92639 1.51466 0.91890 1.24905 0.97428 0.96517 0.94461 1.69889 1.32013 1.02883 1.47331 0.86652 0.84567 0.77904 0.79014 1.20045 1.21051 1.19922 1.21064 0.91467 1.00640 0.86298 1.19804 0.99909 1.00753 0.88370 1.29158 0.92840 0.93030 0.94376 1.81153 1.09306 1.10506 1.12230 0.92387 0.92629 0.92211 0.90577 0.91223 0.85724 0.91147 0.91097 0.90941 0.88196 0.88877 0.88316 0.83215 0.93969 0.94438 0.92239 0.89579 0.89898 0.86707 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.11 -1.06 5.87 -27.88 -0.16 -1.22 16 3 C -0.12 -1.14 9.09 -36.13 -0.33 -1.47 16 4 C -0.15 -1.84 4.70 -102.85 -0.48 -2.32 16 5 C -0.10 -1.05 10.02 36.01 0.36 -0.69 16 6 C 0.58 9.04 4.32 -12.67 -0.05 8.98 16 7 O -0.50 -9.67 14.22 -18.11 -0.26 -9.93 16 8 N -0.60 -9.03 3.13 -170.29 -0.53 -9.56 16 9 C 0.16 1.88 6.76 60.15 0.41 2.29 16 10 S -0.27 -3.75 23.34 -107.50 -2.51 -6.26 16 11 C -0.05 -0.83 7.02 38.43 0.27 -0.56 16 12 C 0.12 2.01 2.75 -68.00 -0.19 1.83 16 13 H 0.12 2.16 5.77 -51.93 -0.30 1.86 16 14 C 0.54 10.30 4.91 -10.99 -0.05 10.25 16 15 O -0.55 -11.60 14.16 -17.83 -0.25 -11.85 16 16 N -0.59 -11.02 2.47 -175.06 -0.43 -11.46 16 17 C 0.23 4.84 4.99 -5.20 -0.03 4.81 16 18 C -0.55 -12.38 8.10 -34.44 -0.28 -12.66 16 19 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 20 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.88 -22.23 13.29 55.43 0.74 -21.49 16 22 Si 0.89 18.90 29.54 -169.99 -5.02 13.88 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C 0.13 2.17 5.43 -4.04 -0.02 2.15 16 27 C -0.05 -0.68 6.03 -29.51 -0.18 -0.86 16 28 C 0.22 3.50 15.43 -20.76 -0.32 3.18 16 29 N -0.45 -8.02 18.54 42.15 0.78 -7.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.10 1.01 7.80 -51.93 -0.41 0.61 16 40 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 41 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 42 H 0.15 2.61 6.88 -51.93 -0.36 2.26 16 43 H 0.04 0.91 8.03 -51.93 -0.42 0.49 16 44 H 0.04 0.82 5.87 -51.93 -0.30 0.51 16 45 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 46 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 47 H 0.08 1.44 7.23 -51.93 -0.38 1.06 16 48 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 49 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 420.27 15.07 6.33 6.33 Total: -1.00 -28.95 420.27 -9.46 -38.40 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.51 Total: 4.77 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -0.79 Total: 14.40 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.55 Total: -49.75 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.51 Total: -21.78 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.51 Total: -6.26 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -28.95 -9.46 -38.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058432303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.245 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds