Wall clock time and date at job start Tue Mar 31 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46919 * 2 1 4 4 C 1.34853 * 117.00004 * 175.35572 * 3 2 1 5 5 O 1.21583 * 119.99949 * 4.98161 * 4 3 2 6 6 C 1.46810 * 120.00190 * 184.98748 * 4 3 2 7 7 O 1.34966 * 125.13880 * 359.23408 * 6 4 3 8 8 C 1.34712 * 110.86107 * 180.02562 * 7 6 4 9 9 C 1.39027 * 133.22835 * 179.97438 * 8 7 6 10 10 C 1.37793 * 119.85491 * 180.02562 * 9 8 7 11 11 C 1.38850 * 120.74757 * 359.97438 * 10 9 8 12 12 C 1.36610 * 120.44183 * 0.02562 * 11 10 9 13 13 C 1.39721 * 119.71465 * 359.97438 * 12 11 10 14 14 C 1.35892 * 125.14461 * 179.26313 * 6 4 3 15 15 C 1.50699 * 126.96175 * 359.97270 * 14 6 4 16 16 N 1.46501 * 109.47418 * 268.01530 * 15 14 6 17 17 C 1.36848 * 120.00044 * 83.00163 * 16 15 14 18 18 H 1.08001 * 119.99839 * 311.04455 * 17 16 15 19 19 C 1.38790 * 120.00100 * 131.04627 * 17 16 15 20 20 N 1.31594 * 119.99784 * 160.70055 * 19 17 16 21 21 Si 1.86795 * 120.00002 * 340.69982 * 19 17 16 22 22 H 1.48500 * 109.46972 * 95.38914 * 21 19 17 23 23 H 1.48507 * 109.47197 * 215.38454 * 21 19 17 24 24 H 1.48494 * 109.47260 * 335.38508 * 21 19 17 25 25 C 1.39290 * 120.00017 * 262.99915 * 16 15 14 26 26 C 1.39082 * 120.09266 * 353.02228 * 25 16 15 27 27 C 1.38046 * 119.91193 * 179.78784 * 26 25 16 28 28 C 1.38330 * 120.09222 * 0.46662 * 27 26 25 29 29 C 1.38334 * 120.17686 * 359.78675 * 28 27 26 30 30 C 1.38052 * 120.08871 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47175 * 299.99410 * 1 2 3 33 33 H 1.08995 * 109.47427 * 60.00435 * 1 2 3 34 34 H 1.09006 * 109.47290 * 240.00464 * 2 1 3 35 35 H 1.09000 * 109.47051 * 119.99862 * 2 1 3 36 36 H 1.07997 * 120.07676 * 0.03125 * 9 8 7 37 37 H 1.07999 * 119.63153 * 180.27827 * 10 9 8 38 38 H 1.08000 * 119.77715 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.14282 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47373 * 28.01511 * 15 14 6 41 41 H 1.08999 * 109.47187 * 148.01411 * 15 14 6 42 42 H 0.96997 * 120.00104 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.03873 * 0.02562 * 26 25 16 44 44 H 1.07999 * 119.95512 * 180.24988 * 27 26 25 45 45 H 1.07998 * 119.91225 * 179.76706 * 28 27 26 46 46 H 1.07995 * 119.95503 * 179.97438 * 29 28 27 47 47 H 1.08004 * 120.04113 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3471 1.5471 0.0973 5 8 4.0911 0.5855 0.0886 6 6 3.9002 2.9020 0.2139 7 8 3.1740 4.0396 0.2195 8 6 3.9726 5.1179 0.3395 9 6 3.7250 6.4848 0.3940 10 6 4.7752 7.3676 0.5224 11 6 6.0833 6.9083 0.5989 12 6 6.3510 5.5697 0.5475 13 6 5.3004 4.6578 0.4175 14 6 5.2207 3.2004 0.3318 15 6 6.3701 2.2264 0.3677 16 7 6.6674 1.8728 1.7580 17 6 5.9417 0.8973 2.3860 18 1 4.8626 0.9165 2.3457 19 6 6.5924 -0.1168 3.0749 20 7 5.9431 -0.8211 3.9771 21 14 8.3899 -0.4819 2.7213 22 1 9.2431 0.2369 3.7015 23 1 8.6298 -1.9431 2.8341 24 1 8.7259 -0.0297 1.3473 25 6 7.6887 2.5295 2.4405 26 6 8.5213 3.4156 1.7653 27 6 9.5295 4.0677 2.4464 28 6 9.7185 3.8336 3.7966 29 6 8.8959 2.9490 4.4708 30 6 7.8822 2.2966 3.7980 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 2.7118 6.8541 0.3359 37 1 4.5784 8.4285 0.5689 38 1 6.8945 7.6141 0.6998 39 1 7.3704 5.2178 0.6070 40 1 6.1017 1.3270 -0.1865 41 1 7.2487 2.6844 -0.0865 42 1 6.3977 -1.5301 4.4583 43 1 8.3767 3.5962 0.7104 44 1 10.1738 4.7591 1.9237 45 1 10.5106 4.3425 4.3257 46 1 9.0470 2.7686 5.5248 47 1 7.2407 1.6058 4.3250 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062580291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:32 Heat of formation + Delta-G solvation = 3.129273 kcal Electronic energy + Delta-G solvation = -33719.961615 eV Core-core repulsion = 29414.439934 eV Total energy + Delta-G solvation = -4305.521681 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.37637 -39.93308 -38.82267 -37.75067 -36.55565 -35.62330 -33.26646 -31.91148 -31.69586 -30.43672 -29.98556 -29.81599 -28.50966 -26.80481 -24.81101 -23.60429 -22.87161 -22.52656 -21.36601 -21.02526 -20.61296 -19.67875 -18.38110 -17.87328 -16.91955 -16.67438 -16.53544 -16.02304 -15.93324 -15.71418 -15.21414 -14.69864 -14.52477 -14.04016 -13.86695 -13.77966 -13.65669 -13.43158 -13.31863 -13.01921 -12.79564 -12.57631 -12.41136 -12.27537 -12.21294 -12.02299 -11.88672 -11.80583 -11.53823 -11.32518 -11.08052 -10.84921 -10.64446 -10.47526 -10.36068 -10.18678 -9.98147 -9.87135 -9.77395 -9.15841 -8.57833 -8.52562 -8.10306 -7.93664 -6.51014 -6.27955 -3.94308 0.63180 1.42561 1.87625 2.34027 2.36085 2.54719 3.03940 3.18754 3.32918 3.40833 3.46751 3.76523 4.31956 4.57074 4.61417 4.66892 4.78454 4.92581 5.00200 5.01423 5.03844 5.07277 5.19810 5.29715 5.36243 5.44356 5.49794 5.68193 5.72073 5.76036 5.82676 5.84930 5.95980 5.98827 6.10966 6.18272 6.23515 6.32503 6.37954 6.44741 6.51407 6.58955 6.63461 6.67811 6.71904 6.97293 7.16492 7.34795 7.42436 7.54780 7.74063 7.94681 7.96768 8.23152 8.73621 9.28187 9.55117 10.74133 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.005506 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.804362 B = 5083.696717 C = 8249.496209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.541 3.459 5 O -0.441 6.441 6 C -0.008 4.008 7 O -0.177 6.177 8 C 0.073 3.927 9 C -0.118 4.118 10 C -0.083 4.083 11 C -0.145 4.145 12 C -0.048 4.048 13 C -0.132 4.132 14 C -0.061 4.061 15 C 0.162 3.838 16 N -0.468 5.468 17 C -0.309 4.309 18 H 0.092 0.908 19 C 0.075 3.925 20 N -0.868 5.868 21 Si 0.867 3.133 22 H -0.257 1.257 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.220 3.780 26 C -0.242 4.242 27 C -0.075 4.075 28 C -0.222 4.222 29 C -0.077 4.077 30 C -0.189 4.189 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.273 0.727 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 10.675 -8.292 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.272 6.272 4 C 0.383 3.617 5 O -0.326 6.326 6 C -0.057 4.057 7 O -0.079 6.079 8 C 0.025 3.975 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.163 4.163 12 C -0.066 4.066 13 C -0.133 4.133 14 C -0.065 4.065 15 C 0.039 3.961 16 N -0.161 5.161 17 C -0.437 4.437 18 H 0.110 0.890 19 C -0.132 4.132 20 N -0.503 5.503 21 Si 0.693 3.307 22 H -0.181 1.181 23 H -0.221 1.221 24 H -0.191 1.191 25 C 0.111 3.889 26 C -0.265 4.265 27 C -0.094 4.094 28 C -0.243 4.243 29 C -0.097 4.097 30 C -0.212 4.212 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.532 10.009 -8.314 13.778 hybrid contribution 0.877 -0.505 0.025 1.012 sum -3.655 9.504 -8.289 13.129 Atomic orbital electron populations 1.21792 0.92779 1.02817 1.03362 1.23081 0.95117 0.79697 1.03236 1.86596 1.23647 1.32693 1.84270 1.19167 0.81197 0.86389 0.74931 1.91064 1.59371 1.38863 1.43287 1.20366 0.89364 0.83762 1.12181 1.84058 1.35488 1.12298 1.76036 1.19753 0.88376 0.88537 1.00874 1.19898 1.00519 0.87171 1.06029 1.20957 0.91924 0.99179 0.98055 1.20759 0.96880 0.95318 1.03392 1.20649 0.98832 0.92011 0.95063 1.19768 0.94014 0.92502 1.07058 1.22196 0.94381 0.92928 0.97019 1.20189 0.92470 0.96161 0.87329 1.42357 1.32090 1.34237 1.07439 1.18708 0.91728 1.02493 1.30731 0.89037 1.25502 0.98386 0.94631 0.94640 1.69836 1.37950 1.21518 1.20996 0.87049 0.85791 0.77131 0.80761 1.18135 1.22073 1.19059 1.18161 0.89547 0.89923 0.91277 1.20466 1.01389 1.05735 0.98959 1.20550 0.96412 0.98119 0.94286 1.20511 1.03641 1.05050 0.95084 1.20761 0.94783 0.95636 0.98495 1.20986 1.01436 1.05412 0.93352 0.90226 0.91454 0.91706 0.91104 0.90377 0.85033 0.84856 0.85273 0.84537 0.88069 0.90547 0.91738 0.87383 0.87848 0.88176 0.87766 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.17 16 2 C 0.06 0.87 6.22 37.16 0.23 1.10 16 3 O -0.35 -6.06 10.23 -42.75 -0.44 -6.50 16 4 C 0.54 10.53 7.68 34.20 0.26 10.80 16 5 O -0.44 -9.51 12.56 -19.33 -0.24 -9.75 16 6 C -0.01 -0.16 7.10 -36.96 -0.26 -0.42 16 7 O -0.18 -3.21 10.60 1.94 0.02 -3.19 16 8 C 0.07 1.21 7.41 -38.34 -0.28 0.92 16 9 C -0.12 -1.51 10.07 -39.45 -0.40 -1.91 16 10 C -0.08 -0.91 10.01 -39.52 -0.40 -1.31 16 11 C -0.15 -1.74 9.98 -39.94 -0.40 -2.14 16 12 C -0.05 -0.71 10.05 -39.62 -0.40 -1.11 16 13 C -0.13 -2.29 6.37 -105.20 -0.67 -2.96 16 14 C -0.06 -1.19 5.92 -102.27 -0.61 -1.79 16 15 C 0.16 3.32 5.44 -5.19 -0.03 3.30 16 16 N -0.47 -11.12 2.10 -114.42 -0.24 -11.36 16 17 C -0.31 -8.34 8.34 -15.11 -0.13 -8.47 16 18 H 0.09 2.70 6.84 -52.49 -0.36 2.34 16 19 C 0.08 2.07 3.74 -17.45 -0.07 2.00 16 20 N -0.87 -24.90 13.97 55.49 0.77 -24.13 16 21 Si 0.87 21.89 24.97 -169.99 -4.25 17.65 16 22 H -0.26 -6.41 6.31 56.52 0.36 -6.05 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.22 5.04 4.80 -83.84 -0.40 4.63 16 26 C -0.24 -4.73 7.98 -39.34 -0.31 -5.05 16 27 C -0.07 -1.34 10.04 -39.62 -0.40 -1.73 16 28 C -0.22 -4.11 10.04 -39.51 -0.40 -4.51 16 29 C -0.08 -1.60 10.00 -39.61 -0.40 -2.00 16 30 C -0.19 -4.46 6.16 -39.34 -0.24 -4.71 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.14 1.97 5.29 -52.48 -0.28 1.70 16 40 H 0.10 2.15 6.21 -51.93 -0.32 1.83 16 41 H 0.08 1.38 5.65 -51.93 -0.29 1.09 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.11 1.89 4.71 -52.48 -0.25 1.64 16 44 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.14 3.57 5.56 -52.48 -0.29 3.28 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -31.46 384.18 -9.10 -40.57 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.62 Total: 7.46 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -4.90 Total: -16.53 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.53 Total: -35.49 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.66 Total: -19.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.25 Total: 17.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.46 -9.10 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062580291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds