Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46919 * 2 1 4 4 C 1.34853 * 117.00004 * 175.35572 * 3 2 1 5 5 O 1.21583 * 119.99949 * 4.98161 * 4 3 2 6 6 C 1.46810 * 120.00190 * 184.98748 * 4 3 2 7 7 O 1.34966 * 125.13880 * 359.23408 * 6 4 3 8 8 C 1.34712 * 110.86107 * 180.02562 * 7 6 4 9 9 C 1.39027 * 133.22835 * 179.97438 * 8 7 6 10 10 C 1.37793 * 119.85491 * 180.02562 * 9 8 7 11 11 C 1.38850 * 120.74757 * 359.97438 * 10 9 8 12 12 C 1.36610 * 120.44183 * 0.02562 * 11 10 9 13 13 C 1.39721 * 119.71465 * 359.97438 * 12 11 10 14 14 C 1.35892 * 125.14461 * 179.26313 * 6 4 3 15 15 C 1.50699 * 126.96175 * 359.97270 * 14 6 4 16 16 N 1.46501 * 109.47418 * 268.01530 * 15 14 6 17 17 C 1.36848 * 120.00044 * 83.00163 * 16 15 14 18 18 H 1.08001 * 119.99839 * 311.04455 * 17 16 15 19 19 C 1.38790 * 120.00100 * 131.04627 * 17 16 15 20 20 N 1.31594 * 119.99784 * 160.70055 * 19 17 16 21 21 Si 1.86795 * 120.00002 * 340.69982 * 19 17 16 22 22 H 1.48500 * 109.46972 * 95.38914 * 21 19 17 23 23 H 1.48507 * 109.47197 * 215.38454 * 21 19 17 24 24 H 1.48494 * 109.47260 * 335.38508 * 21 19 17 25 25 C 1.39290 * 120.00017 * 262.99915 * 16 15 14 26 26 C 1.39082 * 120.09266 * 353.02228 * 25 16 15 27 27 C 1.38046 * 119.91193 * 179.78784 * 26 25 16 28 28 C 1.38330 * 120.09222 * 0.46662 * 27 26 25 29 29 C 1.38334 * 120.17686 * 359.78675 * 28 27 26 30 30 C 1.38052 * 120.08871 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47175 * 299.99410 * 1 2 3 33 33 H 1.08995 * 109.47427 * 60.00435 * 1 2 3 34 34 H 1.09006 * 109.47290 * 240.00464 * 2 1 3 35 35 H 1.09000 * 109.47051 * 119.99862 * 2 1 3 36 36 H 1.07997 * 120.07676 * 0.03125 * 9 8 7 37 37 H 1.07999 * 119.63153 * 180.27827 * 10 9 8 38 38 H 1.08000 * 119.77715 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.14282 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47373 * 28.01511 * 15 14 6 41 41 H 1.08999 * 109.47187 * 148.01411 * 15 14 6 42 42 H 0.96997 * 120.00104 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.03873 * 0.02562 * 26 25 16 44 44 H 1.07999 * 119.95512 * 180.24988 * 27 26 25 45 45 H 1.07998 * 119.91225 * 179.76706 * 28 27 26 46 46 H 1.07995 * 119.95503 * 179.97438 * 29 28 27 47 47 H 1.08004 * 120.04113 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3471 1.5471 0.0973 5 8 4.0911 0.5855 0.0886 6 6 3.9002 2.9020 0.2139 7 8 3.1740 4.0396 0.2195 8 6 3.9726 5.1179 0.3395 9 6 3.7250 6.4848 0.3940 10 6 4.7752 7.3676 0.5224 11 6 6.0833 6.9083 0.5989 12 6 6.3510 5.5697 0.5475 13 6 5.3004 4.6578 0.4175 14 6 5.2207 3.2004 0.3318 15 6 6.3701 2.2264 0.3677 16 7 6.6674 1.8728 1.7580 17 6 5.9417 0.8973 2.3860 18 1 4.8626 0.9165 2.3457 19 6 6.5924 -0.1168 3.0749 20 7 5.9431 -0.8211 3.9771 21 14 8.3899 -0.4819 2.7213 22 1 9.2431 0.2369 3.7015 23 1 8.6298 -1.9431 2.8341 24 1 8.7259 -0.0297 1.3473 25 6 7.6887 2.5295 2.4405 26 6 8.5213 3.4156 1.7653 27 6 9.5295 4.0677 2.4464 28 6 9.7185 3.8336 3.7966 29 6 8.8959 2.9490 4.4708 30 6 7.8822 2.2966 3.7980 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 2.7118 6.8541 0.3359 37 1 4.5784 8.4285 0.5689 38 1 6.8945 7.6141 0.6998 39 1 7.3704 5.2178 0.6070 40 1 6.1017 1.3270 -0.1865 41 1 7.2487 2.6844 -0.0865 42 1 6.3977 -1.5301 4.4583 43 1 8.3767 3.5962 0.7104 44 1 10.1738 4.7591 1.9237 45 1 10.5106 4.3425 4.3257 46 1 9.0470 2.7686 5.5248 47 1 7.2407 1.6058 4.3250 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062580291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -13.176241 kcal Electronic energy + Delta-G solvation = -33720.668675 eV Core-core repulsion = 29414.439934 eV Total energy + Delta-G solvation = -4306.228741 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 4.63 seconds Orbital eigenvalues (eV) -43.66035 -41.37945 -40.47680 -38.82588 -38.02424 -37.25052 -34.90176 -33.66697 -32.79487 -31.64239 -31.48563 -31.02611 -30.07487 -28.49900 -26.15962 -25.30422 -23.96227 -23.67394 -22.91837 -22.36265 -22.23079 -21.10249 -19.84621 -19.55011 -18.18997 -18.09662 -17.95435 -17.60732 -17.20708 -17.02004 -17.00898 -16.25458 -15.71512 -15.55560 -15.36194 -15.21106 -15.06055 -14.73376 -14.70464 -14.46621 -14.34393 -14.02962 -13.97547 -13.73587 -13.58430 -13.27341 -13.06994 -13.02185 -12.93088 -12.73617 -12.59865 -12.50639 -12.16935 -11.98893 -11.89244 -11.73383 -11.62215 -11.42753 -11.23136 -10.89687 -10.46342 -9.68949 -9.54751 -9.31617 -8.50300 -8.16156 -6.02001 -0.65825 0.34674 0.63562 0.73960 0.93971 1.04712 1.29933 1.33821 1.40444 1.67270 1.81804 2.26245 2.69598 2.83874 3.03090 3.23033 3.32775 3.51375 3.62888 3.84213 3.93623 4.01171 4.09727 4.16926 4.26420 4.28426 4.34629 4.37757 4.43738 4.49306 4.60156 4.67390 4.76014 4.77870 4.83518 4.86011 4.98820 5.00560 5.07214 5.14067 5.24473 5.28801 5.36858 5.38561 5.49586 5.55835 5.70481 5.72828 5.84489 5.96616 6.01397 6.15515 6.34190 6.51423 6.85756 7.29804 7.60612 8.69061 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.005506 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.804362 B = 5083.696717 C = 8249.496209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.539 3.461 5 O -0.475 6.475 6 C -0.034 4.034 7 O -0.187 6.187 8 C 0.049 3.951 9 C -0.123 4.123 10 C -0.063 4.063 11 C -0.132 4.132 12 C -0.065 4.065 13 C -0.157 4.157 14 C -0.071 4.071 15 C 0.168 3.832 16 N -0.487 5.487 17 C -0.295 4.295 18 H 0.049 0.951 19 C 0.037 3.963 20 N -0.915 5.915 21 Si 0.921 3.079 22 H -0.251 1.251 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.199 3.801 26 C -0.234 4.234 27 C -0.065 4.065 28 C -0.207 4.207 29 C -0.087 4.087 30 C -0.224 4.224 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.157 0.843 37 H 0.182 0.818 38 H 0.168 0.832 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.272 0.728 43 H 0.130 0.870 44 H 0.153 0.847 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 15.523 -9.274 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.383 3.617 5 O -0.363 6.363 6 C -0.083 4.083 7 O -0.090 6.090 8 C 0.002 3.998 9 C -0.141 4.141 10 C -0.081 4.081 11 C -0.150 4.150 12 C -0.083 4.083 13 C -0.158 4.158 14 C -0.075 4.075 15 C 0.045 3.955 16 N -0.183 5.183 17 C -0.423 4.423 18 H 0.067 0.933 19 C -0.165 4.165 20 N -0.554 5.554 21 Si 0.747 3.253 22 H -0.175 1.175 23 H -0.225 1.225 24 H -0.192 1.192 25 C 0.092 3.908 26 C -0.257 4.257 27 C -0.083 4.083 28 C -0.228 4.228 29 C -0.106 4.106 30 C -0.247 4.247 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.199 0.801 38 H 0.186 0.814 39 H 0.158 0.842 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.171 0.829 45 H 0.157 0.843 46 H 0.136 0.864 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.161 14.902 -9.301 17.699 hybrid contribution 0.178 -1.670 0.354 1.717 sum -1.984 13.232 -8.947 16.095 Atomic orbital electron populations 1.21819 0.89397 1.04709 1.03818 1.23413 0.97690 0.78286 1.02618 1.86601 1.22436 1.34541 1.83739 1.19390 0.81681 0.86510 0.74142 1.91026 1.60165 1.39953 1.45125 1.20374 0.89885 0.84114 1.13904 1.84004 1.35880 1.12492 1.76589 1.20401 0.88066 0.89441 1.01929 1.20429 1.02766 0.85534 1.05374 1.21573 0.90815 1.01104 0.94566 1.21273 0.98580 0.94521 1.00608 1.20848 0.98234 0.93008 0.96207 1.19920 0.95486 0.91446 1.08924 1.22243 0.93880 0.94360 0.96972 1.20099 0.93845 0.95945 0.85610 1.42263 1.32845 1.34628 1.08612 1.18331 0.90235 1.03193 1.30554 0.93330 1.25953 1.01312 0.94637 0.94638 1.69924 1.39451 1.23035 1.22944 0.86194 0.82496 0.76389 0.80256 1.17539 1.22518 1.19186 1.18450 0.89719 0.91215 0.91379 1.20805 1.00627 1.04175 1.00073 1.21102 0.95587 0.97492 0.94130 1.21003 1.03026 1.03178 0.95586 1.21046 0.94319 0.95789 0.99464 1.20861 1.02922 1.06758 0.94144 0.87549 0.91783 0.90368 0.90178 0.92652 0.82534 0.80110 0.81438 0.84240 0.90116 0.88127 0.91827 0.85258 0.82907 0.84310 0.86405 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.29 71.98 0.74 -2.20 16 2 C 0.05 1.61 6.22 71.98 0.45 2.06 16 3 O -0.36 -13.28 10.23 -55.91 -0.57 -13.85 16 4 C 0.54 23.18 7.68 70.06 0.54 23.72 16 5 O -0.47 -22.80 12.56 19.56 0.25 -22.56 16 6 C -0.03 -1.43 7.10 23.97 0.17 -1.26 16 7 O -0.19 -7.14 10.60 -12.40 -0.13 -7.27 16 8 C 0.05 1.61 7.41 23.07 0.17 1.78 16 9 C -0.12 -2.79 10.07 22.35 0.23 -2.56 16 10 C -0.06 -1.05 10.01 22.31 0.22 -0.83 16 11 C -0.13 -2.48 9.98 22.04 0.22 -2.26 16 12 C -0.07 -1.75 10.05 22.25 0.22 -1.52 16 13 C -0.16 -5.38 6.37 -20.24 -0.13 -5.51 16 14 C -0.07 -2.87 5.92 -18.34 -0.11 -2.98 16 15 C 0.17 7.22 5.44 85.63 0.47 7.68 16 16 N -0.49 -24.19 2.10 -515.90 -1.09 -25.27 16 17 C -0.29 -17.16 8.34 84.04 0.70 -16.46 16 18 H 0.05 3.19 6.84 -2.91 -0.02 3.17 16 19 C 0.04 2.15 3.74 84.86 0.32 2.47 16 20 N -0.92 -56.59 13.97 21.65 0.30 -56.29 16 21 Si 0.92 47.45 24.97 68.60 1.71 49.16 16 22 H -0.25 -12.49 6.31 99.48 0.63 -11.87 16 23 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 24 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 25 C 0.20 9.09 4.80 38.36 0.18 9.28 16 26 C -0.23 -8.46 7.98 22.43 0.18 -8.28 16 27 C -0.06 -1.96 10.04 22.25 0.22 -1.73 16 28 C -0.21 -6.68 10.04 22.31 0.22 -6.45 16 29 C -0.09 -3.45 10.00 22.25 0.22 -3.23 16 30 C -0.22 -10.72 6.16 22.43 0.14 -10.58 16 31 H 0.11 1.66 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 3.54 5.29 -2.91 -0.02 3.52 16 40 H 0.08 3.72 6.21 -2.39 -0.01 3.71 16 41 H 0.10 3.64 5.65 -2.39 -0.01 3.63 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.13 4.08 4.71 -2.91 -0.01 4.06 16 44 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 45 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 46 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 47 H 0.10 5.37 5.56 -2.91 -0.02 5.35 16 Total: -1.00 -77.31 384.18 6.79 -70.51 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.94 Total: 24.44 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 5.38 Total: -18.87 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -0.78 Total: -81.56 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.46 Total: -43.68 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.71 Total: 49.16 kcal Total: -77.31 6.79 -70.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062580291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.338 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.63 seconds