Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47543 * 2 1 4 4 O 1.42901 * 109.46854 * 239.99984 * 2 1 3 5 5 C 1.35714 * 117.00019 * 92.30324 * 4 2 1 6 6 C 1.38640 * 120.14561 * 354.49887 * 5 4 2 7 7 C 1.38112 * 120.09242 * 180.02562 * 6 5 4 8 8 C 1.38512 * 120.38903 * 359.96187 * 7 6 5 9 9 C 1.37832 * 120.29679 * 0.02562 * 8 7 6 10 10 C 1.39714 * 119.90085 * 0.02578 * 9 8 7 11 11 C 1.43196 * 120.19213 * 179.97438 * 10 9 8 12 12 N 4.92744 * 112.56817 * 229.04699 * 2 1 3 13 13 C 1.50699 * 109.47284 * 120.00400 * 2 1 3 14 14 O 1.21280 * 120.00073 * 108.27244 * 13 2 1 15 15 N 1.34779 * 119.99688 * 288.27097 * 13 2 1 16 16 C 1.46494 * 119.99993 * 5.46762 * 15 13 2 17 17 C 1.50703 * 109.46804 * 95.43144 * 16 15 13 18 18 H 1.07995 * 120.00191 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99960 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99795 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00079 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47206 * 90.00156 * 21 19 17 23 23 H 1.48500 * 109.47443 * 210.00408 * 21 19 17 24 24 H 1.48507 * 109.47005 * 330.00120 * 21 19 17 25 25 C 1.46499 * 119.99874 * 185.47600 * 15 13 2 26 26 C 1.50697 * 109.47435 * 89.99813 * 25 15 13 27 27 C 1.38677 * 120.41742 * 269.71688 * 26 25 15 28 28 C 1.38628 * 118.42091 * 179.78179 * 27 26 25 29 29 C 1.38228 * 119.15696 * 0.51632 * 28 27 26 30 30 N 1.31849 * 120.76651 * 359.72897 * 29 28 27 31 31 C 1.31887 * 121.72658 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.46514 * 299.12913 * 1 2 3 33 33 H 1.08999 * 109.46959 * 59.12147 * 1 2 3 34 34 H 1.08994 * 109.47306 * 179.12427 * 1 2 3 35 35 H 1.08001 * 119.95833 * 0.02764 * 6 5 4 36 36 H 1.07998 * 119.80157 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.85152 * 179.74428 * 8 7 6 38 38 H 1.08000 * 120.04911 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47300 * 215.42539 * 16 15 13 40 40 H 1.08996 * 109.47907 * 335.43390 * 16 15 13 41 41 H 0.97001 * 119.99903 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47004 * 209.99982 * 25 15 13 43 43 H 1.09000 * 109.47262 * 329.99684 * 25 15 13 44 44 H 1.08008 * 120.78743 * 0.02831 * 27 26 25 45 45 H 1.07998 * 120.41794 * 180.22858 * 28 27 26 46 46 H 1.08007 * 119.61504 * 179.74420 * 29 28 27 47 47 H 1.07995 * 119.61622 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2574 0.0904 -2.2600 6 6 1.9441 1.4409 -2.2525 7 6 2.1997 2.2173 -3.3657 8 6 2.7703 1.6553 -4.4959 9 6 3.0884 0.3144 -4.5208 10 6 2.8342 -0.4826 -3.4018 11 6 3.1617 -1.8764 -3.4210 12 7 3.4210 -2.9823 -3.4365 13 6 2.0324 -0.7105 1.2304 14 8 2.5450 -1.8052 1.1317 15 7 1.9120 -0.1293 2.4405 16 6 1.1871 1.1365 2.5762 17 6 -0.2387 0.8582 2.9775 18 1 -0.5714 -0.1596 3.1177 19 6 -1.1181 1.9032 3.1665 20 7 -2.3621 1.6604 3.5172 21 14 -0.5421 3.6638 2.9261 22 1 -0.7562 4.0660 1.5127 23 1 -1.3149 4.5639 3.8193 24 1 0.9028 3.7613 3.2550 25 6 2.5062 -0.7633 3.6199 26 6 3.9170 -0.2654 3.8009 27 6 4.9782 -0.9310 3.2060 28 6 6.2584 -0.4343 3.3960 29 6 6.4344 0.6936 4.1754 30 7 5.4021 1.2980 4.7299 31 6 4.1700 0.8570 4.5660 32 1 -0.3632 0.5003 0.8977 33 1 -0.3633 0.5274 -0.8820 34 1 -0.3633 -1.0275 -0.0157 35 1 1.4996 1.8865 -1.3748 36 1 1.9534 3.2687 -3.3549 37 1 2.9626 2.2696 -5.3631 38 1 3.5328 -0.1196 -5.4042 39 1 1.6662 1.7495 3.3396 40 1 1.1996 1.6664 1.6239 41 1 -2.9809 2.3955 3.6498 42 1 1.9168 -0.5138 4.5023 43 1 2.5172 -1.8448 3.4843 44 1 4.8108 -1.8132 2.6057 45 1 7.1079 -0.9252 2.9446 46 1 7.4290 1.0845 4.3317 47 1 3.3494 1.3789 5.0357 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063484999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = 32.420532 kcal Electronic energy + Delta-G solvation = -32757.334049 eV Core-core repulsion = 28485.375284 eV Total energy + Delta-G solvation = -4271.958766 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -40.79518 -40.14964 -39.19340 -37.51480 -36.26435 -35.56463 -33.43498 -32.46543 -32.03201 -31.51505 -30.91023 -29.89407 -28.34763 -26.46389 -24.26595 -24.04823 -23.50822 -22.80755 -22.51792 -21.50603 -19.54399 -18.91194 -17.68395 -17.28899 -16.93411 -16.75765 -16.21512 -15.90987 -15.62560 -15.52471 -15.23802 -15.07063 -14.62152 -14.43240 -14.13633 -13.92771 -13.54661 -13.44530 -13.15563 -13.12434 -13.00242 -12.87034 -12.72139 -12.66364 -12.45769 -12.24005 -11.96830 -11.85699 -11.69132 -11.56958 -11.38053 -11.15852 -11.01776 -10.83678 -10.78579 -10.47269 -9.85554 -9.73337 -9.39224 -9.37336 -9.22270 -8.93221 -8.87199 -8.38271 -8.07112 -6.41830 -4.44828 0.64700 1.13849 1.16890 1.38191 2.72740 2.78633 2.93908 2.96435 3.01722 3.11717 3.15084 3.68226 3.77133 3.89562 4.04901 4.08097 4.52789 4.62345 4.64234 4.78008 4.83452 4.88676 4.95090 4.99802 5.06379 5.09041 5.13044 5.17930 5.25812 5.32613 5.50150 5.55798 5.74386 5.89722 5.95168 5.99161 6.05099 6.06164 6.12953 6.17235 6.22364 6.22907 6.38651 6.43672 6.46093 6.79090 6.90456 6.96351 7.20629 7.22120 7.61602 7.78921 8.04402 8.16489 8.54404 8.66308 9.14735 10.69304 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.006612 B = 0.004186 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4233.608075 B = 6687.438844 C = 9031.610765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.070 3.930 3 H 0.098 0.902 4 O -0.282 6.282 5 C 0.187 3.813 6 C -0.215 4.215 7 C -0.046 4.046 8 C -0.166 4.166 9 C -0.033 4.033 10 C -0.068 4.068 11 C 0.264 3.736 12 N -0.419 5.419 13 C 0.524 3.476 14 O -0.541 6.541 15 N -0.581 5.581 16 C 0.203 3.797 17 C -0.547 4.547 18 H 0.085 0.915 19 C 0.083 3.917 20 N -0.879 5.879 21 Si 0.863 3.137 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.261 1.261 25 C 0.162 3.838 26 C -0.148 4.148 27 C -0.056 4.056 28 C -0.179 4.179 29 C 0.092 3.908 30 N -0.489 5.489 31 C 0.113 3.887 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.270 0.730 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.151 0.849 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.032 4.289 -9.019 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.011 3.989 3 H 0.115 0.885 4 O -0.193 6.193 5 C 0.137 3.863 6 C -0.234 4.234 7 C -0.065 4.065 8 C -0.184 4.184 9 C -0.054 4.054 10 C -0.073 4.073 11 C -0.051 4.051 12 N -0.095 5.095 13 C 0.311 3.689 14 O -0.418 6.418 15 N -0.312 5.312 16 C 0.082 3.918 17 C -0.585 4.585 18 H 0.103 0.897 19 C -0.123 4.123 20 N -0.515 5.515 21 Si 0.688 3.312 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.186 1.186 25 C 0.039 3.961 26 C -0.152 4.152 27 C -0.083 4.083 28 C -0.199 4.199 29 C -0.065 4.065 30 N -0.198 5.198 31 C -0.044 4.044 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.155 0.845 45 H 0.149 0.851 46 H 0.168 0.832 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.647 2.612 -8.469 14.635 hybrid contribution -0.259 0.972 -0.516 1.131 sum 11.387 3.584 -8.985 14.941 Atomic orbital electron populations 1.22812 0.90465 1.04812 1.07171 1.22474 0.97534 0.96255 0.82618 0.88475 1.86197 1.78992 1.35347 1.18793 1.19071 0.90915 0.89880 0.86420 1.21381 1.07683 0.92708 1.01632 1.21203 0.93549 0.99959 0.91755 1.20958 1.03423 0.94701 0.99321 1.20994 0.95524 0.93281 0.95580 1.15313 1.10263 0.86571 0.95121 1.25298 0.93643 0.92397 0.93758 1.81187 1.09276 1.11596 1.07446 1.19905 0.78859 0.85824 0.84326 1.90657 1.45135 1.19848 1.86183 1.47770 1.52890 1.25177 1.05365 1.19998 0.93118 0.81105 0.97616 1.21269 0.92279 0.96150 1.48753 0.89719 1.24866 0.94651 0.98812 0.93980 1.69873 1.04082 1.32721 1.44785 0.87049 0.79836 0.85161 0.79113 1.19570 1.20555 1.18586 1.20180 0.88118 0.98429 0.89395 1.21427 0.97405 0.97420 0.98911 1.21696 0.91992 0.99034 0.95572 1.22130 0.97992 0.98609 1.01156 1.22717 0.97902 0.92486 0.93435 1.67709 0.99679 1.31234 1.21146 1.22805 0.94114 0.92719 0.94780 0.84294 0.91998 0.91497 0.83919 0.84897 0.84892 0.84489 0.94458 0.95314 0.91998 0.88225 0.89231 0.84477 0.85128 0.83163 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.34 9.11 37.16 0.34 -3.00 16 2 C 0.07 1.18 1.77 -27.88 -0.05 1.13 16 3 H 0.10 1.44 4.69 -51.93 -0.24 1.20 16 4 O -0.28 -4.87 8.77 -38.48 -0.34 -5.21 16 5 C 0.19 2.62 6.68 -38.71 -0.26 2.36 16 6 C -0.22 -2.46 8.67 -39.48 -0.34 -2.81 16 7 C -0.05 -0.40 10.03 -39.53 -0.40 -0.79 16 8 C -0.17 -1.28 10.02 -39.63 -0.40 -1.68 16 9 C -0.03 -0.30 9.76 -39.18 -0.38 -0.69 16 10 C -0.07 -0.88 5.75 -106.70 -0.61 -1.49 16 11 C 0.26 4.07 14.87 -22.47 -0.33 3.74 16 12 N -0.42 -7.35 18.54 41.84 0.78 -6.58 16 13 C 0.52 10.05 7.03 -10.98 -0.08 9.97 16 14 O -0.54 -11.67 16.02 -14.08 -0.23 -11.90 16 15 N -0.58 -10.58 2.44 -176.44 -0.43 -11.01 16 16 C 0.20 3.86 3.73 -5.20 -0.02 3.84 16 17 C -0.55 -12.43 7.36 -34.44 -0.25 -12.68 16 18 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 19 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.88 -23.07 13.96 55.43 0.77 -22.29 16 21 Si 0.86 17.55 27.47 -169.99 -4.67 12.88 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.05 6.54 56.52 0.37 -4.68 16 25 C 0.16 2.65 5.62 -5.20 -0.03 2.62 16 26 C -0.15 -2.25 5.48 -104.48 -0.57 -2.82 16 27 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 28 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 29 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 30 N -0.49 -7.32 10.36 -13.25 -0.14 -7.46 16 31 C 0.11 1.69 10.86 -17.55 -0.19 1.50 16 32 H 0.14 2.69 3.93 -51.93 -0.20 2.49 16 33 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.14 1.59 5.73 -52.49 -0.30 1.29 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.04 0.71 7.17 -51.93 -0.37 0.33 16 40 H 0.03 0.52 4.96 -51.93 -0.26 0.26 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.10 1.56 8.02 -51.93 -0.42 1.15 16 43 H 0.09 1.49 7.31 -51.93 -0.38 1.11 16 44 H 0.14 2.05 7.99 -52.48 -0.42 1.63 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 47 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -30.32 402.10 -8.40 -38.72 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.55 Total: 8.57 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -4.66 Total: -1.78 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.98 Total: -47.34 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.56 Total: -17.11 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -4.67 Total: 12.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.32 -8.40 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063484999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.141 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds