Wall clock time and date at job start Tue Mar 31 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00296 * 2 1 4 4 H 1.48499 * 109.46984 * 269.99851 * 3 2 1 5 5 H 1.48501 * 109.46920 * 30.00138 * 3 2 1 6 6 H 1.48497 * 109.46866 * 150.00002 * 3 2 1 7 7 C 1.37873 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00652 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99981 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99546 * 278.05365 * 10 9 7 12 12 C 1.50700 * 109.47265 * 269.99682 * 11 10 9 13 13 C 1.38673 * 120.42029 * 269.72248 * 12 11 10 14 14 C 1.38627 * 118.41878 * 179.77947 * 13 12 11 15 15 C 1.38221 * 119.16117 * 0.51878 * 14 13 12 16 16 N 1.31858 * 120.76516 * 359.71984 * 15 14 13 17 17 C 1.31884 * 121.72591 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00604 * 98.05414 * 10 9 7 19 19 O 1.21548 * 120.00680 * 186.09821 * 18 10 9 20 20 C 1.47858 * 119.99724 * 6.09554 * 18 10 9 21 21 C 1.39627 * 120.11437 * 330.33032 * 20 18 10 22 22 C 1.37969 * 119.98315 * 179.97438 * 21 20 18 23 23 C 1.38263 * 120.21733 * 359.97438 * 22 21 20 24 24 C 1.38902 * 120.22998 * 359.76642 * 23 22 21 25 25 N 1.40287 * 119.99730 * 180.27810 * 24 23 22 26 26 C 1.35065 * 127.38580 * 0.23625 * 25 24 23 27 27 N 1.30740 * 107.27168 * 179.97438 * 26 25 24 28 28 N 1.28416 * 110.64906 * 0.02562 * 27 26 25 29 29 N 1.28951 * 110.20167 * 359.72493 * 28 27 26 30 30 C 1.38579 * 120.01034 * 0.51480 * 24 23 22 31 31 H 0.97008 * 119.99573 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47286 * 60.00030 * 9 7 2 33 33 H 1.09003 * 109.46779 * 299.99972 * 9 7 2 34 34 H 1.08995 * 109.47433 * 30.00427 * 11 10 9 35 35 H 1.09003 * 109.46732 * 149.99810 * 11 10 9 36 36 H 1.08001 * 120.79042 * 0.02562 * 13 12 11 37 37 H 1.08004 * 120.41588 * 180.21938 * 14 13 12 38 38 H 1.08005 * 119.62172 * 179.74240 * 15 14 13 39 39 H 1.07998 * 119.62225 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.00714 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.89055 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.88341 * 180.02562 * 23 22 21 43 43 H 1.07999 * 126.36113 * 359.93718 * 26 25 24 44 44 H 1.07998 * 120.10767 * 179.74551 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0013 11 6 4.0758 -3.3266 1.2542 12 6 5.4282 -3.1156 1.8848 13 6 6.4811 -3.9686 1.5901 14 6 7.7085 -3.7333 2.1901 15 6 7.8382 -2.6704 3.0641 16 7 6.8135 -1.8825 3.3247 17 6 5.6330 -2.0733 2.7686 18 6 4.3790 -3.1550 -1.1574 19 8 4.6785 -4.3329 -1.1772 20 6 4.4308 -2.3581 -2.4017 21 6 3.5666 -1.2755 -2.5768 22 6 3.6176 -0.5334 -3.7388 23 6 4.5230 -0.8575 -4.7322 24 6 5.3906 -1.9293 -4.5652 25 7 6.3113 -2.2502 -5.5739 26 6 6.4850 -1.6206 -6.7561 27 7 7.4438 -2.2434 -7.3903 28 7 7.8876 -3.2240 -6.6900 29 7 7.2546 -3.2927 -5.5686 30 6 5.3436 -2.6847 -3.4044 31 1 -0.4850 0.8401 0.0004 32 1 3.8745 -0.6810 0.8905 33 1 3.8752 -0.6798 -0.8895 34 1 3.2992 -2.9770 1.9344 35 1 3.9308 -4.3878 1.0519 36 1 6.3491 -4.7941 0.9065 37 1 8.5514 -4.3753 1.9809 38 1 8.7900 -2.4828 3.5389 39 1 4.8168 -1.4072 3.0067 40 1 2.8589 -1.0187 -1.8025 41 1 2.9487 0.3038 -3.8725 42 1 4.5586 -0.2727 -5.6395 43 1 5.9339 -0.7626 -7.1117 44 1 6.0146 -3.5209 -3.2746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063485156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:41 Heat of formation + Delta-G solvation = 187.381877 kcal Electronic energy + Delta-G solvation = -31962.673338 eV Core-core repulsion = 27691.612519 eV Total energy + Delta-G solvation = -4271.060819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33328 -40.57322 -39.89132 -38.47348 -35.89037 -35.13592 -33.35409 -32.53365 -32.41840 -31.71100 -31.09058 -30.17221 -28.50651 -26.55862 -25.16019 -24.28352 -23.52561 -23.01103 -22.48749 -22.03341 -21.51588 -19.76472 -18.15291 -17.43529 -16.98619 -16.93804 -16.74488 -16.24772 -16.18806 -15.98986 -15.60351 -15.42146 -14.84852 -14.58593 -14.31246 -13.96394 -13.71407 -13.53111 -13.39154 -13.29569 -13.09587 -12.98447 -12.87300 -12.71541 -12.47391 -11.99859 -11.66521 -11.57210 -11.41524 -11.32952 -11.19276 -11.10699 -10.67127 -10.55539 -10.40960 -9.95710 -9.79383 -9.54694 -9.39701 -9.15744 -9.08934 -8.92823 -8.56583 -8.12070 -6.54665 -4.60266 0.22564 0.88009 1.14022 1.37225 1.55329 1.60061 2.09326 2.92576 2.98209 3.05363 3.08115 3.38082 3.77137 3.85588 3.96843 3.98854 4.10759 4.51989 4.54373 4.69332 4.72351 4.81027 4.86257 4.95342 4.99072 5.11299 5.15779 5.16840 5.26210 5.36336 5.40424 5.50631 5.72445 5.77175 5.88356 6.00579 6.02983 6.06854 6.17955 6.20862 6.34848 6.39425 6.42204 6.45777 6.78096 6.80993 6.91777 7.08972 7.72829 8.03694 8.06420 8.22456 8.46878 8.56569 9.00538 10.55825 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.007103 B = 0.004002 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.959902 B = 6994.729291 C = 9782.735573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.085 3.915 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.179 3.821 10 N -0.575 5.575 11 C 0.161 3.839 12 C -0.149 4.149 13 C -0.056 4.056 14 C -0.179 4.179 15 C 0.092 3.908 16 N -0.489 5.489 17 C 0.113 3.887 18 C 0.562 3.438 19 O -0.553 6.553 20 C -0.110 4.110 21 C -0.088 4.088 22 C -0.112 4.112 23 C -0.099 4.099 24 C 0.095 3.905 25 N -0.314 5.314 26 C 0.220 3.780 27 N -0.334 5.334 28 N -0.043 5.043 29 N -0.075 5.075 30 C -0.047 4.047 31 H 0.272 0.728 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.208 0.792 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.238 0.762 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 0.697 -3.377 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.122 4.122 3 Si 0.682 3.318 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.590 4.590 8 H 0.105 0.895 9 C 0.059 3.941 10 N -0.303 5.303 11 C 0.037 3.963 12 C -0.152 4.152 13 C -0.083 4.083 14 C -0.199 4.199 15 C -0.065 4.065 16 N -0.198 5.198 17 C -0.044 4.044 18 C 0.351 3.649 19 O -0.433 6.433 20 C -0.114 4.114 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.120 4.120 24 C 0.003 3.997 25 N -0.104 5.104 26 C -0.077 4.077 27 N -0.184 5.184 28 N -0.037 5.037 29 N -0.061 5.061 30 C -0.068 4.068 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.223 0.777 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.254 0.746 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.719 -0.106 -2.978 10.166 hybrid contribution -0.529 1.002 -0.422 1.209 sum 9.190 0.896 -3.400 9.840 Atomic orbital electron populations 1.69872 1.06232 1.27870 1.46624 1.24906 0.94761 0.98857 0.93669 0.87132 0.81022 0.84031 0.79651 1.19137 1.20229 1.18293 1.21312 0.88622 0.95571 1.53485 0.89533 1.20727 0.95883 0.78440 0.99074 1.47734 1.61664 1.15718 1.05233 1.20214 0.92390 0.98206 0.85455 1.21412 0.98005 0.96969 0.98810 1.21684 0.92002 0.98266 0.96347 1.22132 0.98442 0.99966 0.99346 1.22725 0.97455 0.91208 0.95151 1.67711 1.00066 1.27953 1.24031 1.22812 0.94620 0.94824 0.92159 1.18047 0.77127 0.86469 0.83287 1.90709 1.51046 1.15460 1.86100 1.19855 0.98404 0.97899 0.95216 1.23790 0.97279 0.90638 0.98871 1.21162 0.98271 1.00985 0.92653 1.21026 0.95112 0.95258 1.00653 1.17309 0.93708 0.99880 0.88803 1.49046 1.25632 1.21713 1.13964 1.27374 0.96777 0.99932 0.83616 1.74448 1.11667 1.05655 1.26629 1.78061 1.16988 1.11146 0.97553 1.82724 1.00617 1.06063 1.16653 1.20897 0.97850 0.98023 0.90044 0.91739 0.94636 0.92914 0.88181 0.89072 0.84399 0.85081 0.83168 0.82494 0.77653 0.83856 0.84846 0.74583 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.03 13.96 55.43 0.77 -21.26 16 2 C 0.09 1.96 5.34 -17.82 -0.10 1.86 16 3 Si 0.86 16.83 27.35 -169.99 -4.65 12.18 16 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 7 C -0.55 -12.25 8.03 -34.44 -0.28 -12.53 16 8 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.18 3.38 3.72 -5.19 -0.02 3.37 16 10 N -0.58 -10.30 2.45 -177.54 -0.43 -10.74 16 11 C 0.16 2.55 5.61 -5.19 -0.03 2.52 16 12 C -0.15 -2.21 5.48 -104.48 -0.57 -2.78 16 13 C -0.06 -0.79 9.86 -39.28 -0.39 -1.17 16 14 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 15 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.32 10.36 -13.25 -0.14 -7.45 16 17 C 0.11 1.69 10.86 -17.55 -0.19 1.50 16 18 C 0.56 10.42 7.46 -12.32 -0.09 10.33 16 19 O -0.55 -11.06 16.21 5.32 0.09 -10.97 16 20 C -0.11 -1.84 5.58 -104.99 -0.59 -2.43 16 21 C -0.09 -1.42 7.48 -39.16 -0.29 -1.71 16 22 C -0.11 -1.42 10.02 -39.67 -0.40 -1.82 16 23 C -0.10 -1.06 9.48 -39.33 -0.37 -1.44 16 24 C 0.09 1.24 6.70 -83.61 -0.56 0.68 16 25 N -0.31 -4.05 3.85 -11.77 -0.05 -4.10 16 26 C 0.22 2.25 12.15 -90.16 -1.10 1.15 16 27 N -0.33 -4.44 12.15 29.64 0.36 -4.08 16 28 N -0.04 -0.65 13.39 60.35 0.81 0.15 16 29 N -0.08 -1.16 13.33 60.35 0.80 -0.35 16 30 C -0.05 -0.73 9.24 -39.00 -0.36 -1.09 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.04 0.67 7.19 -51.93 -0.37 0.30 16 33 H 0.05 0.97 3.51 -51.95 -0.18 0.79 16 34 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 35 H 0.09 1.44 7.30 -51.93 -0.38 1.06 16 36 H 0.14 1.92 8.02 -52.49 -0.42 1.50 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.21 3.80 2.87 -52.49 -0.15 3.65 16 41 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.13 0.86 6.87 -52.49 -0.36 0.50 16 43 H 0.24 1.06 7.18 -52.49 -0.38 0.68 16 44 H 0.15 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -29.21 379.31 -6.98 -36.19 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.34 Total: 9.90 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -5.92 Total: -5.17 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 2.13 Total: -47.83 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -4.65 Total: 12.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.21 -6.98 -36.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063485156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.572 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds