Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00296 * 2 1 4 4 H 1.48499 * 109.46984 * 269.99851 * 3 2 1 5 5 H 1.48501 * 109.46920 * 30.00138 * 3 2 1 6 6 H 1.48497 * 109.46866 * 150.00002 * 3 2 1 7 7 C 1.37873 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00652 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99981 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99546 * 278.05365 * 10 9 7 12 12 C 1.50700 * 109.47265 * 269.99682 * 11 10 9 13 13 C 1.38673 * 120.42029 * 269.72248 * 12 11 10 14 14 C 1.38627 * 118.41878 * 179.77947 * 13 12 11 15 15 C 1.38221 * 119.16117 * 0.51878 * 14 13 12 16 16 N 1.31858 * 120.76516 * 359.71984 * 15 14 13 17 17 C 1.31884 * 121.72591 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00604 * 98.05414 * 10 9 7 19 19 O 1.21548 * 120.00680 * 186.09821 * 18 10 9 20 20 C 1.47858 * 119.99724 * 6.09554 * 18 10 9 21 21 C 1.39627 * 120.11437 * 330.33032 * 20 18 10 22 22 C 1.37969 * 119.98315 * 179.97438 * 21 20 18 23 23 C 1.38263 * 120.21733 * 359.97438 * 22 21 20 24 24 C 1.38902 * 120.22998 * 359.76642 * 23 22 21 25 25 N 1.40287 * 119.99730 * 180.27810 * 24 23 22 26 26 C 1.35065 * 127.38580 * 0.23625 * 25 24 23 27 27 N 1.30740 * 107.27168 * 179.97438 * 26 25 24 28 28 N 1.28416 * 110.64906 * 0.02562 * 27 26 25 29 29 N 1.28951 * 110.20167 * 359.72493 * 28 27 26 30 30 C 1.38579 * 120.01034 * 0.51480 * 24 23 22 31 31 H 0.97008 * 119.99573 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47286 * 60.00030 * 9 7 2 33 33 H 1.09003 * 109.46779 * 299.99972 * 9 7 2 34 34 H 1.08995 * 109.47433 * 30.00427 * 11 10 9 35 35 H 1.09003 * 109.46732 * 149.99810 * 11 10 9 36 36 H 1.08001 * 120.79042 * 0.02562 * 13 12 11 37 37 H 1.08004 * 120.41588 * 180.21938 * 14 13 12 38 38 H 1.08005 * 119.62172 * 179.74240 * 15 14 13 39 39 H 1.07998 * 119.62225 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.00714 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.89055 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.88341 * 180.02562 * 23 22 21 43 43 H 1.07999 * 126.36113 * 359.93718 * 26 25 24 44 44 H 1.07998 * 120.10767 * 179.74551 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0013 11 6 4.0758 -3.3266 1.2542 12 6 5.4282 -3.1156 1.8848 13 6 6.4811 -3.9686 1.5901 14 6 7.7085 -3.7333 2.1901 15 6 7.8382 -2.6704 3.0641 16 7 6.8135 -1.8825 3.3247 17 6 5.6330 -2.0733 2.7686 18 6 4.3790 -3.1550 -1.1574 19 8 4.6785 -4.3329 -1.1772 20 6 4.4308 -2.3581 -2.4017 21 6 3.5666 -1.2755 -2.5768 22 6 3.6176 -0.5334 -3.7388 23 6 4.5230 -0.8575 -4.7322 24 6 5.3906 -1.9293 -4.5652 25 7 6.3113 -2.2502 -5.5739 26 6 6.4850 -1.6206 -6.7561 27 7 7.4438 -2.2434 -7.3903 28 7 7.8876 -3.2240 -6.6900 29 7 7.2546 -3.2927 -5.5686 30 6 5.3436 -2.6847 -3.4044 31 1 -0.4850 0.8401 0.0004 32 1 3.8745 -0.6810 0.8905 33 1 3.8752 -0.6798 -0.8895 34 1 3.2992 -2.9770 1.9344 35 1 3.9308 -4.3878 1.0519 36 1 6.3491 -4.7941 0.9065 37 1 8.5514 -4.3753 1.9809 38 1 8.7900 -2.4828 3.5389 39 1 4.8168 -1.4072 3.0067 40 1 2.8589 -1.0187 -1.8025 41 1 2.9487 0.3038 -3.8725 42 1 4.5586 -0.2727 -5.6395 43 1 5.9339 -0.7626 -7.1117 44 1 6.0146 -3.5209 -3.2746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063485156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = 170.683760 kcal Electronic energy + Delta-G solvation = -31963.397423 eV Core-core repulsion = 27691.612519 eV Total energy + Delta-G solvation = -4271.784903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.31890 -41.83929 -40.99188 -39.68878 -37.35110 -36.22183 -34.88054 -33.79210 -33.49890 -32.81098 -32.19768 -31.27724 -30.06065 -27.80366 -26.18459 -25.43270 -24.75916 -24.32085 -23.65455 -23.13848 -22.61363 -20.95260 -19.38974 -19.13907 -18.10992 -18.02113 -17.74137 -17.49216 -17.30908 -17.10644 -16.78407 -16.69582 -16.08443 -15.97697 -15.55883 -15.10098 -14.88492 -14.69990 -14.61396 -14.40956 -14.31679 -14.25433 -14.10096 -13.95423 -13.55181 -13.34770 -12.93701 -12.68226 -12.66490 -12.60758 -12.56535 -12.18908 -12.07119 -11.82917 -11.67135 -11.61430 -11.08870 -10.82685 -10.74055 -10.51824 -10.24360 -10.03400 -9.70372 -9.58606 -8.32418 -6.42372 -0.76056 -0.23576 0.05891 0.27294 0.49040 0.65595 1.15638 1.39641 1.47627 1.54147 1.69265 2.08056 2.32908 2.58615 2.86022 2.99382 3.01230 3.29709 3.44835 3.49340 3.68770 3.77396 3.81755 3.85658 3.96618 4.03323 4.05128 4.12979 4.19501 4.33003 4.40175 4.45711 4.54941 4.63268 4.69790 4.72160 4.80020 4.86185 4.98218 5.14589 5.19968 5.27483 5.29924 5.31960 5.33643 5.53083 5.72213 5.72905 6.10175 6.46375 6.66975 6.95783 7.04921 7.23441 7.23740 8.82057 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.007103 B = 0.004002 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.959902 B = 6994.729291 C = 9782.735573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.041 3.959 3 Si 0.913 3.087 4 H -0.235 1.235 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.543 4.543 8 H 0.039 0.961 9 C 0.189 3.811 10 N -0.578 5.578 11 C 0.161 3.839 12 C -0.157 4.157 13 C -0.067 4.067 14 C -0.169 4.169 15 C 0.092 3.908 16 N -0.507 5.507 17 C 0.103 3.897 18 C 0.553 3.447 19 O -0.579 6.579 20 C -0.129 4.129 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.069 4.069 24 C 0.101 3.899 25 N -0.322 5.322 26 C 0.246 3.754 27 N -0.356 5.356 28 N -0.060 5.060 29 N -0.110 5.110 30 C -0.060 4.060 31 H 0.273 0.727 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.195 0.805 43 H 0.300 0.700 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.638 3.526 -5.560 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.161 4.161 3 Si 0.734 3.266 4 H -0.158 1.158 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.581 4.581 8 H 0.058 0.942 9 C 0.069 3.931 10 N -0.306 5.306 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.094 4.094 14 C -0.189 4.189 15 C -0.065 4.065 16 N -0.216 5.216 17 C -0.054 4.054 18 C 0.343 3.657 19 O -0.462 6.462 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.089 4.089 24 C 0.009 3.991 25 N -0.112 5.112 26 C -0.049 4.049 27 N -0.206 5.206 28 N -0.055 5.055 29 N -0.095 5.095 30 C -0.081 4.081 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.181 0.819 38 H 0.203 0.797 39 H 0.175 0.825 40 H 0.198 0.802 41 H 0.189 0.811 42 H 0.212 0.788 43 H 0.315 0.685 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.767 2.710 -5.164 13.133 hybrid contribution -1.127 0.022 0.172 1.141 sum 10.640 2.732 -4.992 12.066 Atomic orbital electron populations 1.70018 1.08233 1.28781 1.49127 1.25602 0.95191 1.02265 0.93049 0.86232 0.79745 0.79205 0.81378 1.15787 1.21290 1.17230 1.21265 0.90247 0.93774 1.52807 0.94221 1.20572 0.93533 0.79207 0.99830 1.47796 1.61408 1.15541 1.05859 1.20204 0.93514 0.97538 0.84950 1.21224 0.97467 0.97823 0.99462 1.21761 0.92812 0.98094 0.96714 1.22457 0.98387 0.99952 0.98079 1.23337 0.98056 0.90436 0.94627 1.67744 1.00424 1.28934 1.24506 1.22810 0.95098 0.94981 0.92525 1.18519 0.76551 0.86490 0.84112 1.90672 1.52354 1.16553 1.86597 1.19688 1.00051 0.98716 0.94850 1.23495 0.97307 0.91631 1.00291 1.21462 0.98627 1.00767 0.91399 1.21542 0.92035 0.93594 1.01759 1.17417 0.93836 0.99921 0.87883 1.49046 1.25500 1.21810 1.14824 1.28567 0.95069 0.99666 0.81568 1.74400 1.13052 1.05860 1.27260 1.78064 1.17552 1.12098 0.97827 1.82724 1.01910 1.07779 1.17109 1.20756 0.97766 0.98418 0.91204 0.91770 0.94389 0.91117 0.88556 0.89851 0.85061 0.81885 0.79674 0.82542 0.80174 0.81076 0.78824 0.68494 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.45 13.96 21.45 0.30 -48.15 16 2 C 0.04 1.93 5.34 84.65 0.45 2.38 16 3 Si 0.91 33.78 27.35 68.60 1.88 35.65 16 4 H -0.23 -7.48 7.11 99.48 0.71 -6.77 16 5 H -0.29 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.25 -8.73 6.54 99.48 0.65 -8.08 16 7 C -0.54 -25.23 8.03 25.60 0.21 -25.02 16 8 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.19 7.32 3.72 85.64 0.32 7.64 16 10 N -0.58 -21.87 2.45 -833.90 -2.04 -23.91 16 11 C 0.16 5.51 5.61 85.63 0.48 5.99 16 12 C -0.16 -4.83 5.48 -19.77 -0.11 -4.94 16 13 C -0.07 -1.90 9.86 22.47 0.22 -1.68 16 14 C -0.17 -3.83 10.11 22.36 0.23 -3.61 16 15 C 0.09 2.14 11.18 84.68 0.95 3.08 16 16 N -0.51 -14.72 10.36 -195.84 -2.03 -16.75 16 17 C 0.10 3.10 10.86 84.67 0.92 4.02 16 18 C 0.55 21.62 7.46 86.79 0.65 22.26 16 19 O -0.58 -24.74 16.21 -3.87 -0.06 -24.80 16 20 C -0.13 -4.39 5.58 -20.10 -0.11 -4.50 16 21 C -0.11 -3.39 7.48 22.54 0.17 -3.22 16 22 C -0.10 -2.20 10.02 22.21 0.22 -1.98 16 23 C -0.07 -1.08 9.48 22.43 0.21 -0.87 16 24 C 0.10 2.33 6.70 38.03 0.25 2.58 16 25 N -0.32 -7.31 3.85 -191.16 -0.74 -8.04 16 26 C 0.25 3.82 12.15 180.19 2.19 6.01 16 27 N -0.36 -8.42 12.15 -60.13 -0.73 -9.15 16 28 N -0.06 -1.78 13.39 37.02 0.50 -1.29 16 29 N -0.11 -3.28 13.33 37.02 0.49 -2.78 16 30 C -0.06 -1.84 9.24 22.65 0.21 -1.63 16 31 H 0.27 13.37 8.31 -92.70 -0.77 12.60 16 32 H 0.04 1.45 7.19 -2.39 -0.02 1.43 16 33 H 0.07 2.57 3.51 -2.41 -0.01 2.56 16 34 H 0.10 3.26 8.02 -2.39 -0.02 3.24 16 35 H 0.08 2.92 7.30 -2.39 -0.02 2.90 16 36 H 0.13 3.84 8.02 -2.91 -0.02 3.82 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.18 6.65 2.87 -2.91 -0.01 6.64 16 41 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.19 0.72 6.87 -2.91 -0.02 0.70 16 43 H 0.30 0.21 7.18 -2.91 -0.02 0.19 16 44 H 0.13 4.28 7.63 -2.91 -0.02 4.26 16 Total: -1.00 -70.76 379.31 6.04 -64.72 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 1.02 Total: 27.97 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 7.46 Total: 6.54 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.25 Total: -110.08 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 1.88 Total: 35.65 kcal Total: -70.76 6.04 -64.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063485156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.402 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds