Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35709 * 117.00440 * 2 1 4 4 C 1.39020 * 119.90950 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08887 * 179.97438 * 4 3 2 6 6 C 1.39751 * 119.90788 * 0.02562 * 5 4 3 7 7 C 1.47610 * 120.08471 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00241 * 131.64128 * 7 6 5 9 9 N 1.34776 * 119.99497 * 311.64025 * 7 6 5 10 10 C 1.46496 * 120.00446 * 5.00177 * 9 7 6 11 11 C 1.50709 * 109.47017 * 95.73937 * 10 9 7 12 12 H 1.07998 * 119.99525 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99941 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00086 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46907 * 90.00234 * 15 13 11 17 17 H 1.48497 * 109.47063 * 209.99824 * 15 13 11 18 18 H 1.48495 * 109.47405 * 330.00057 * 15 13 11 19 19 C 1.46506 * 119.99668 * 185.00490 * 9 7 6 20 20 C 1.53001 * 109.47200 * 89.99805 * 19 9 7 21 21 C 1.53001 * 109.46917 * 179.97438 * 20 19 9 22 22 N 1.46904 * 109.46922 * 180.02562 * 21 20 19 23 23 C 1.46897 * 111.00082 * 170.00007 * 22 21 20 24 24 C 1.46902 * 110.99733 * 293.95767 * 22 21 20 25 25 C 1.39714 * 119.82826 * 0.02562 * 6 5 4 26 26 C 1.37720 * 119.90930 * 359.71948 * 25 6 5 27 27 N 1.48017 * 119.95577 * 180.27400 * 26 25 6 28 28 O 1.21802 * 120.00299 * 0.25607 * 27 26 25 29 29 O 1.21802 * 119.99844 * 180.26063 * 27 26 25 30 30 H 1.09000 * 109.47151 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47324 * 299.99786 * 1 2 3 33 33 H 1.08003 * 119.95239 * 359.96990 * 4 3 2 34 34 H 1.07997 * 120.04415 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47377 * 215.73616 * 10 9 7 36 36 H 1.08996 * 109.47128 * 335.74050 * 10 9 7 37 37 H 0.96996 * 119.99524 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46898 * 210.00204 * 19 9 7 39 39 H 1.08999 * 109.47143 * 330.00168 * 19 9 7 40 40 H 1.08999 * 109.46996 * 300.00048 * 20 19 9 41 41 H 1.08999 * 109.46776 * 60.00139 * 20 19 9 42 42 H 1.08999 * 109.47335 * 299.99851 * 21 20 19 43 43 H 1.08991 * 109.47187 * 60.00212 * 21 20 19 44 44 H 1.09000 * 109.46879 * 59.99733 * 23 22 21 45 45 H 1.09000 * 109.47051 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.46831 * 299.99873 * 23 22 21 47 47 H 1.08995 * 109.47506 * 59.99728 * 24 22 21 48 48 H 1.09007 * 109.46548 * 180.02562 * 24 22 21 49 49 H 1.08996 * 109.46726 * 299.99277 * 24 22 21 50 50 H 1.08000 * 120.04353 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9076 3.6026 0.0011 6 6 3.3031 3.6777 0.0005 7 6 3.9732 4.9929 0.0005 8 8 4.8729 5.2168 0.7871 9 7 3.5878 5.9456 -0.8714 10 6 2.4334 5.7163 -1.7439 11 6 1.2029 6.3208 -1.1180 12 1 1.2738 6.8255 -0.1659 13 6 -0.0133 6.2293 -1.7610 14 7 -0.0995 5.6151 -2.9207 15 14 -1.5387 6.9779 -0.9848 16 1 -1.6853 8.3844 -1.4382 17 1 -2.7351 6.1989 -1.3934 18 1 -1.4083 6.9456 0.4940 19 6 4.3232 7.2104 -0.9469 20 6 5.4490 7.0852 -1.9754 21 6 6.2167 8.4063 -2.0546 22 7 7.2972 8.2863 -3.0425 23 6 7.9042 9.5948 -3.3204 24 6 8.3104 7.3192 -2.5996 25 6 4.0622 2.5048 -0.0011 26 6 3.4331 1.2797 0.0037 27 7 4.2363 0.0364 0.0081 28 8 5.4528 0.0973 0.0122 29 8 3.6808 -1.0475 0.0075 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2078 2.3149 0.0005 34 1 1.3173 4.5070 0.0019 35 1 2.6131 6.1804 -2.7137 36 1 2.2849 4.6447 -1.8758 37 1 -0.9553 5.5505 -3.3728 38 1 3.6440 8.0083 -1.2469 39 1 4.7477 7.4427 0.0298 40 1 6.1282 6.2873 -1.6753 41 1 5.0246 6.8529 -2.9521 42 1 5.5372 9.2039 -2.3549 43 1 6.6410 8.6390 -1.0780 44 1 8.3168 10.0068 -2.3995 45 1 8.7007 9.4772 -4.0552 46 1 7.1452 10.2713 -3.7131 47 1 7.8468 6.3416 -2.4683 48 1 9.0989 7.2502 -3.3492 49 1 8.7378 7.6489 -1.6527 50 1 5.1408 2.5588 -0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064361791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -40.612691 kcal Electronic energy + Delta-G solvation = -33935.252143 eV Core-core repulsion = 29352.817500 eV Total energy + Delta-G solvation = -4582.434644 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.183 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.91432 -40.39025 -39.42121 -37.75706 -37.13609 -36.13978 -35.47934 -33.25045 -32.19511 -31.51664 -30.44207 -27.81524 -27.70964 -27.61756 -26.33868 -25.83588 -23.62853 -23.19402 -22.35868 -22.05580 -20.72520 -19.81142 -18.48265 -18.38509 -17.78292 -17.27848 -16.81641 -16.61930 -16.16350 -15.91366 -15.76673 -15.50812 -15.08601 -14.89956 -14.70507 -14.58147 -14.29811 -13.90830 -13.69500 -13.39785 -12.88284 -12.70722 -12.56642 -12.44891 -12.23136 -12.11285 -11.89049 -11.82288 -11.61095 -11.45714 -11.39591 -11.33085 -11.22974 -11.20840 -11.06138 -10.91384 -10.80045 -10.71199 -10.41867 -10.26316 -10.00755 -9.49307 -9.38250 -8.85065 -8.50381 -8.39082 -7.97707 -6.46257 -4.56929 0.19999 0.92904 1.63751 1.67745 2.86239 2.97559 3.02843 3.12260 3.14380 3.44717 3.72243 3.98920 4.08352 4.46157 4.61464 4.82441 4.84817 5.00378 5.03475 5.04796 5.10639 5.12106 5.17525 5.22307 5.33522 5.36772 5.48225 5.54028 5.58573 5.60731 5.62219 5.72801 5.75757 5.84894 5.93808 6.06089 6.12375 6.29955 6.36919 6.45187 6.50080 6.58625 6.59388 6.94534 6.99084 6.99319 7.02367 7.27269 7.47706 7.74752 8.00485 8.04302 8.48886 8.68549 9.11533 10.58608 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.006656 B = 0.003749 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4205.943715 B = 7467.672002 C =10977.433759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.284 6.284 3 C 0.207 3.793 4 C -0.220 4.220 5 C 0.023 3.977 6 C -0.156 4.156 7 C 0.563 3.437 8 O -0.559 6.559 9 N -0.583 5.583 10 C 0.228 3.772 11 C -0.552 4.552 12 H 0.067 0.933 13 C 0.071 3.929 14 N -0.878 5.878 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.122 3.878 20 C -0.130 4.130 21 C 0.059 3.941 22 N -0.548 5.548 23 C 0.025 3.975 24 C 0.022 3.978 25 C 0.019 3.981 26 C -0.098 4.098 27 N 0.044 4.956 28 O -0.187 6.187 29 O -0.148 6.148 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.154 0.846 34 H 0.189 0.811 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -0.787 1.804 4.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.194 6.194 3 C 0.157 3.843 4 C -0.239 4.239 5 C 0.005 3.995 6 C -0.160 4.160 7 C 0.350 3.650 8 O -0.440 6.440 9 N -0.312 5.312 10 C 0.108 3.892 11 C -0.590 4.590 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.514 5.514 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.002 4.002 20 C -0.169 4.169 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.123 4.123 24 C -0.127 4.127 25 C 0.000 4.000 26 C -0.183 4.183 27 N 0.560 4.440 28 O -0.396 6.396 29 O -0.367 6.367 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.171 0.829 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.450 -0.484 1.580 3.825 hybrid contribution -0.720 0.540 0.837 1.229 sum 2.730 0.057 2.417 3.647 Atomic orbital electron populations 1.23313 0.77189 1.04852 1.02313 1.86317 1.22348 1.24807 1.85943 1.18905 0.89291 0.86425 0.89664 1.21335 1.01161 0.90569 1.10837 1.22790 0.93869 1.00509 0.82351 1.19789 0.93994 0.93355 1.08845 1.17864 0.82433 0.83744 0.80925 1.90733 1.32068 1.81209 1.40000 1.48089 1.30844 1.14729 1.37552 1.19685 0.81508 0.98159 0.89842 1.21479 0.92383 1.38079 1.07032 0.91513 1.24979 0.99132 0.94659 0.94663 1.69929 1.26337 1.40718 1.14404 0.86566 0.81963 0.79730 0.79797 1.20160 1.20865 1.19499 1.21263 0.93349 0.86308 0.99235 1.21951 0.97377 0.96906 1.00674 1.22065 0.93182 0.98588 0.93079 1.61967 1.11446 1.09037 1.44742 1.22368 0.99549 0.90583 0.99826 1.22433 0.94717 0.97014 0.98489 1.20747 1.01805 0.87987 0.89502 1.20167 0.87970 0.85329 1.24828 1.43272 1.01045 1.02366 0.97294 1.94515 0.95760 1.94005 1.55294 1.94541 1.74070 1.15286 1.52847 0.91542 0.87347 0.91884 0.82862 0.79397 0.94126 0.93932 0.92103 0.89840 0.90784 0.91876 0.90726 0.90549 0.94755 0.95870 0.91585 0.91351 0.90856 0.91701 0.95727 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -4.05 8.48 -41.00 -0.35 -4.40 16 3 C 0.21 3.24 6.68 -39.02 -0.26 2.98 16 4 C -0.22 -3.28 9.01 -39.49 -0.36 -3.64 16 5 C 0.02 0.39 7.51 -39.22 -0.29 0.09 16 6 C -0.16 -2.79 4.95 -104.96 -0.52 -3.31 16 7 C 0.56 10.96 7.23 -12.44 -0.09 10.87 16 8 O -0.56 -11.89 16.57 5.29 0.09 -11.80 16 9 N -0.58 -11.05 2.46 -176.26 -0.43 -11.48 16 10 C 0.23 4.76 4.66 -5.19 -0.02 4.73 16 11 C -0.55 -12.21 6.84 -34.44 -0.24 -12.45 16 12 H 0.07 1.50 7.81 -52.49 -0.41 1.09 16 13 C 0.07 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.88 -21.25 13.29 55.43 0.74 -20.51 16 15 Si 0.89 17.91 29.54 -169.99 -5.02 12.89 16 16 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 C 0.12 2.03 5.46 -4.04 -0.02 2.00 16 20 C -0.13 -1.95 5.46 -26.73 -0.15 -2.09 16 21 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 22 N -0.55 -6.85 5.02 -251.26 -1.26 -8.11 16 23 C 0.03 0.25 9.57 60.06 0.57 0.83 16 24 C 0.02 0.25 9.32 60.07 0.56 0.81 16 25 C 0.02 0.33 9.21 -39.22 -0.36 -0.03 16 26 C -0.10 -1.68 6.86 -79.86 -0.55 -2.22 16 27 N 0.04 0.80 4.45 34.00 0.15 0.95 16 28 O -0.19 -3.46 18.44 -29.46 -0.54 -4.00 16 29 O -0.15 -2.72 17.23 -36.51 -0.63 -3.35 16 30 H 0.07 0.60 7.65 -51.93 -0.40 0.20 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 33 H 0.15 1.89 6.28 -52.48 -0.33 1.56 16 34 H 0.19 3.51 4.74 -52.49 -0.25 3.26 16 35 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.04 0.93 5.40 -51.93 -0.28 0.65 16 37 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 40 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 47 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 48 H 0.06 0.65 8.12 -51.92 -0.42 0.23 16 49 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.16 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 414.92 15.07 6.25 6.25 Total: -1.00 -27.45 414.92 -9.15 -36.59 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.29 Total: 4.96 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.85 Total: 1.99 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.81 Total: -39.14 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.43 Total: -23.54 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.02 Total: 12.89 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -27.45 -9.15 -36.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.018 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds