Wall clock time and date at job start Tue Mar 31 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35709 * 117.00440 * 2 1 4 4 C 1.39020 * 119.90950 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08887 * 179.97438 * 4 3 2 6 6 C 1.39751 * 119.90788 * 0.02562 * 5 4 3 7 7 C 1.47610 * 120.08471 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00241 * 131.64128 * 7 6 5 9 9 N 1.34776 * 119.99497 * 311.64025 * 7 6 5 10 10 C 1.46496 * 120.00446 * 5.00177 * 9 7 6 11 11 C 1.50709 * 109.47017 * 95.73937 * 10 9 7 12 12 H 1.07998 * 119.99525 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99941 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00086 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46907 * 90.00234 * 15 13 11 17 17 H 1.48497 * 109.47063 * 209.99824 * 15 13 11 18 18 H 1.48495 * 109.47405 * 330.00057 * 15 13 11 19 19 C 1.46506 * 119.99668 * 185.00490 * 9 7 6 20 20 C 1.53001 * 109.47200 * 89.99805 * 19 9 7 21 21 C 1.53001 * 109.46917 * 179.97438 * 20 19 9 22 22 N 1.46904 * 109.46922 * 180.02562 * 21 20 19 23 23 C 1.46897 * 111.00082 * 170.00007 * 22 21 20 24 24 C 1.46902 * 110.99733 * 293.95767 * 22 21 20 25 25 C 1.39714 * 119.82826 * 0.02562 * 6 5 4 26 26 C 1.37720 * 119.90930 * 359.71948 * 25 6 5 27 27 N 1.48017 * 119.95577 * 180.27400 * 26 25 6 28 28 O 1.21802 * 120.00299 * 0.25607 * 27 26 25 29 29 O 1.21802 * 119.99844 * 180.26063 * 27 26 25 30 30 H 1.09000 * 109.47151 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47324 * 299.99786 * 1 2 3 33 33 H 1.08003 * 119.95239 * 359.96990 * 4 3 2 34 34 H 1.07997 * 120.04415 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47377 * 215.73616 * 10 9 7 36 36 H 1.08996 * 109.47128 * 335.74050 * 10 9 7 37 37 H 0.96996 * 119.99524 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46898 * 210.00204 * 19 9 7 39 39 H 1.08999 * 109.47143 * 330.00168 * 19 9 7 40 40 H 1.08999 * 109.46996 * 300.00048 * 20 19 9 41 41 H 1.08999 * 109.46776 * 60.00139 * 20 19 9 42 42 H 1.08999 * 109.47335 * 299.99851 * 21 20 19 43 43 H 1.08991 * 109.47187 * 60.00212 * 21 20 19 44 44 H 1.09000 * 109.46879 * 59.99733 * 23 22 21 45 45 H 1.09000 * 109.47051 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.46831 * 299.99873 * 23 22 21 47 47 H 1.08995 * 109.47506 * 59.99728 * 24 22 21 48 48 H 1.09007 * 109.46548 * 180.02562 * 24 22 21 49 49 H 1.08996 * 109.46726 * 299.99277 * 24 22 21 50 50 H 1.08000 * 120.04353 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9076 3.6026 0.0011 6 6 3.3031 3.6777 0.0005 7 6 3.9732 4.9929 0.0005 8 8 4.8729 5.2168 0.7871 9 7 3.5878 5.9456 -0.8714 10 6 2.4334 5.7163 -1.7439 11 6 1.2029 6.3208 -1.1180 12 1 1.2738 6.8255 -0.1659 13 6 -0.0133 6.2293 -1.7610 14 7 -0.0995 5.6151 -2.9207 15 14 -1.5387 6.9779 -0.9848 16 1 -1.6853 8.3844 -1.4382 17 1 -2.7351 6.1989 -1.3934 18 1 -1.4083 6.9456 0.4940 19 6 4.3232 7.2104 -0.9469 20 6 5.4490 7.0852 -1.9754 21 6 6.2167 8.4063 -2.0546 22 7 7.2972 8.2863 -3.0425 23 6 7.9042 9.5948 -3.3204 24 6 8.3104 7.3192 -2.5996 25 6 4.0622 2.5048 -0.0011 26 6 3.4331 1.2797 0.0037 27 7 4.2363 0.0364 0.0081 28 8 5.4528 0.0973 0.0122 29 8 3.6808 -1.0475 0.0075 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2078 2.3149 0.0005 34 1 1.3173 4.5070 0.0019 35 1 2.6131 6.1804 -2.7137 36 1 2.2849 4.6447 -1.8758 37 1 -0.9553 5.5505 -3.3728 38 1 3.6440 8.0083 -1.2469 39 1 4.7477 7.4427 0.0298 40 1 6.1282 6.2873 -1.6753 41 1 5.0246 6.8529 -2.9521 42 1 5.5372 9.2039 -2.3549 43 1 6.6410 8.6390 -1.0780 44 1 8.3168 10.0068 -2.3995 45 1 8.7007 9.4772 -4.0552 46 1 7.1452 10.2713 -3.7131 47 1 7.8468 6.3416 -2.4683 48 1 9.0989 7.2502 -3.3492 49 1 8.7378 7.6489 -1.6527 50 1 5.1408 2.5588 -0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064361791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:31 Heat of formation + Delta-G solvation = -54.313407 kcal Electronic energy + Delta-G solvation = -33935.846251 eV Core-core repulsion = 29352.817500 eV Total energy + Delta-G solvation = -4583.028751 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.183 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.30615 -41.74289 -40.76976 -38.83045 -38.37807 -37.55806 -37.03497 -34.85299 -33.60170 -32.82834 -31.71728 -29.36860 -28.69891 -28.50462 -27.71038 -27.06993 -25.13452 -24.58191 -23.68095 -23.28460 -21.82516 -21.21190 -19.85801 -19.75471 -19.14526 -18.68403 -18.48296 -18.00257 -17.61258 -17.12420 -16.91250 -16.57525 -16.37656 -16.16895 -16.11920 -15.79029 -15.43325 -15.13616 -14.91981 -14.71752 -14.27156 -14.19092 -13.95222 -13.50527 -13.40504 -13.27083 -13.08807 -12.95303 -12.87298 -12.70687 -12.66634 -12.65219 -12.59435 -12.44117 -12.35810 -12.27584 -12.21616 -12.06471 -11.94381 -11.69930 -11.53920 -11.04803 -10.76266 -10.56524 -9.81347 -9.54862 -9.33281 -8.21581 -6.37325 -1.17845 -0.38725 0.25733 0.30702 1.44085 1.48570 1.52811 1.57450 1.79083 2.03376 2.28539 2.43910 3.01013 3.06844 3.19799 3.40103 3.50282 3.76268 3.79552 3.92413 4.09542 4.18811 4.20954 4.30478 4.34127 4.35505 4.40550 4.45012 4.50474 4.61143 4.65372 4.69697 4.72909 4.79609 4.82066 4.86746 4.98113 4.99487 5.00786 5.09227 5.12533 5.18932 5.26452 5.27655 5.63443 5.74720 5.86798 6.00249 6.03711 6.10444 6.43942 6.57120 6.75466 7.10503 7.34803 8.83171 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.006656 B = 0.003749 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4205.943715 B = 7467.672002 C =10977.433759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.294 6.294 3 C 0.219 3.781 4 C -0.207 4.207 5 C 0.019 3.981 6 C -0.170 4.170 7 C 0.562 3.438 8 O -0.582 6.582 9 N -0.584 5.584 10 C 0.243 3.757 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.038 3.962 14 N -0.907 5.907 15 Si 0.947 3.053 16 H -0.282 1.282 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.121 3.879 20 C -0.116 4.116 21 C 0.066 3.934 22 N -0.565 5.565 23 C 0.025 3.975 24 C 0.023 3.977 25 C 0.021 3.979 26 C -0.110 4.110 27 N 0.044 4.956 28 O -0.205 6.205 29 O -0.147 6.147 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.270 0.730 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.029 0.971 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.027 0.973 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -0.727 2.108 3.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.204 6.204 3 C 0.168 3.832 4 C -0.226 4.226 5 C 0.001 3.999 6 C -0.174 4.174 7 C 0.350 3.650 8 O -0.464 6.464 9 N -0.312 5.312 10 C 0.123 3.877 11 C -0.587 4.587 12 H 0.080 0.920 13 C -0.165 4.165 14 N -0.544 5.544 15 Si 0.773 3.227 16 H -0.208 1.208 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.002 4.002 20 C -0.155 4.155 21 C -0.063 4.063 22 N -0.289 5.289 23 C -0.123 4.123 24 C -0.125 4.125 25 C 0.002 3.998 26 C -0.195 4.195 27 N 0.558 4.442 28 O -0.410 6.410 29 O -0.368 6.368 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.046 0.954 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.249 -0.416 1.886 2.965 hybrid contribution -0.395 0.455 0.730 0.946 sum 1.854 0.039 2.615 3.206 Atomic orbital electron populations 1.23746 0.74459 1.07125 1.03549 1.86329 1.25105 1.23937 1.85070 1.18938 0.88775 0.87286 0.88227 1.21550 1.02482 0.89274 1.09313 1.22630 0.93292 1.00960 0.83067 1.19674 0.94496 0.92739 1.10540 1.18091 0.82138 0.84293 0.80488 1.90708 1.33123 1.81749 1.40849 1.48109 1.30561 1.15499 1.37063 1.19377 0.81858 0.97389 0.89102 1.21546 0.92821 1.37657 1.06698 0.91967 1.25520 1.01236 0.94858 0.94858 1.70014 1.26919 1.41970 1.15528 0.85711 0.79225 0.78503 0.79263 1.20798 1.20526 1.18898 1.21380 0.93683 0.85453 0.99695 1.21779 0.96646 0.97995 0.99102 1.21966 0.93466 0.97219 0.93629 1.61959 1.11876 1.10535 1.44567 1.22424 0.99992 0.89362 1.00490 1.22426 0.94784 0.96122 0.99210 1.20678 1.01800 0.87939 0.89426 1.20271 0.88705 0.84713 1.25855 1.43392 1.01054 1.02641 0.97091 1.94512 0.96140 1.94140 1.56191 1.94517 1.74001 1.15650 1.52607 0.90805 0.84753 0.90034 0.79855 0.80670 0.96116 0.94627 0.92062 0.89526 0.90864 0.93085 0.92145 0.89710 0.94401 0.95223 0.90345 0.90823 0.92379 0.90134 0.95424 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.81 113.37 1.11 1.18 16 2 O -0.29 -7.70 8.48 -69.10 -0.59 -8.28 16 3 C 0.22 6.49 6.68 22.63 0.15 6.64 16 4 C -0.21 -5.81 9.01 22.33 0.20 -5.60 16 5 C 0.02 0.63 7.51 22.50 0.17 0.80 16 6 C -0.17 -6.17 4.95 -20.08 -0.10 -6.27 16 7 C 0.56 22.31 7.23 86.72 0.63 22.94 16 8 O -0.58 -25.25 16.57 -3.98 -0.07 -25.31 16 9 N -0.58 -22.60 2.46 -829.81 -2.04 -24.64 16 10 C 0.24 10.33 4.66 85.64 0.40 10.73 16 11 C -0.55 -24.23 6.84 25.60 0.18 -24.05 16 12 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 13 C 0.04 1.71 5.46 84.65 0.46 2.17 16 14 N -0.91 -43.55 13.29 21.45 0.28 -43.26 16 15 Si 0.95 35.85 29.54 68.60 2.03 37.88 16 16 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 19 C 0.12 4.08 5.46 86.38 0.47 4.55 16 20 C -0.12 -3.55 5.46 30.59 0.17 -3.39 16 21 C 0.07 1.66 4.96 86.30 0.43 2.09 16 22 N -0.57 -13.66 5.02 -948.85 -4.76 -18.43 16 23 C 0.03 0.46 9.57 127.69 1.22 1.68 16 24 C 0.02 0.51 9.32 127.69 1.19 1.70 16 25 C 0.02 0.74 9.21 22.50 0.21 0.95 16 26 C -0.11 -3.72 6.86 36.43 0.25 -3.47 16 27 N 0.04 1.60 4.45 -46.33 -0.21 1.39 16 28 O -0.21 -7.62 18.44 18.88 0.35 -7.28 16 29 O -0.15 -5.26 17.23 25.62 0.44 -4.82 16 30 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.01 7.65 -2.39 -0.02 0.99 16 33 H 0.18 3.94 6.28 -2.91 -0.02 3.92 16 34 H 0.18 6.48 4.74 -2.91 -0.01 6.46 16 35 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 36 H 0.04 1.58 5.40 -2.39 -0.01 1.56 16 37 H 0.27 12.39 8.31 -92.71 -0.77 11.62 16 38 H 0.09 2.84 8.07 -2.39 -0.02 2.82 16 39 H 0.07 2.49 7.36 -2.39 -0.02 2.47 16 40 H 0.05 1.68 6.55 -2.39 -0.02 1.66 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 43 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 44 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 46 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 47 H 0.06 1.47 6.47 -2.39 -0.02 1.45 16 48 H 0.08 1.53 8.12 -2.38 -0.02 1.51 16 49 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.16 5.37 7.60 -2.91 -0.02 5.35 16 Total: -1.00 -58.15 414.92 3.54 -54.62 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.96 Total: 25.50 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 7.13 Total: 12.64 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -6.72 Total: -84.93 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: 0.14 Total: -45.69 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -58.15 3.54 -54.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.303 kcal (2) G-P(sol) polarization free energy of solvation -58.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds