Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31231 * 1 3 3 Si 1.86808 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47161 * 270.00295 * 3 2 1 5 5 H 1.48503 * 109.46559 * 30.00375 * 3 2 1 6 6 H 1.48500 * 109.47136 * 150.00097 * 3 2 1 7 7 C 1.39163 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00439 * 173.87001 * 7 2 1 9 9 N 1.36356 * 119.99937 * 353.87421 * 7 2 1 10 10 N 1.38416 * 117.03616 * 9.77360 * 9 7 2 11 11 C 1.30170 * 124.63286 * 159.08812 * 10 9 7 12 12 C 1.46343 * 120.33849 * 180.65907 * 11 10 9 13 13 O 1.21729 * 120.00206 * 58.90243 * 12 11 10 14 14 N 1.34782 * 119.99708 * 238.90468 * 12 11 10 15 15 C 1.47146 * 120.98218 * 5.71276 * 14 12 11 16 16 C 1.53713 * 108.16265 * 129.43366 * 15 14 12 17 17 O 1.42965 * 109.14632 * 52.53707 * 16 15 14 18 18 C 1.42963 * 114.16343 * 297.29074 * 17 16 15 19 19 C 1.47152 * 120.97845 * 185.99855 * 14 12 11 20 20 S 1.76669 * 119.31440 * 0.67813 * 11 10 9 21 21 O 1.42097 * 106.67825 * 261.25630 * 20 11 10 22 22 O 1.42103 * 106.71503 * 127.62752 * 20 11 10 23 23 C 1.76521 * 105.44983 * 14.43357 * 20 11 10 24 24 C 1.37691 * 120.55556 * 165.62953 * 23 20 11 25 25 C 1.38429 * 119.88808 * 180.23104 * 24 23 20 26 26 C 1.38335 * 119.90263 * 0.06640 * 25 24 23 27 27 C 1.37933 * 120.36423 * 359.93811 * 26 25 24 28 28 C 1.38785 * 117.03742 * 189.79760 * 9 7 2 29 29 H 0.97007 * 119.99651 * 5.00643 * 1 2 3 30 30 H 1.09002 * 109.68493 * 249.21657 * 15 14 12 31 31 H 1.09007 * 109.68277 * 9.76411 * 15 14 12 32 32 H 1.09002 * 109.65584 * 292.57407 * 16 15 14 33 33 H 1.09006 * 109.48585 * 172.39659 * 16 15 14 34 34 H 1.09000 * 109.51460 * 302.65426 * 18 17 16 35 35 H 1.09006 * 109.54780 * 182.52963 * 18 17 16 36 36 H 1.08998 * 109.68135 * 350.23242 * 19 14 12 37 37 H 1.08997 * 109.68263 * 110.75258 * 19 14 12 38 38 H 1.08007 * 120.05793 * 359.95308 * 24 23 20 39 39 H 1.07999 * 120.04407 * 180.02562 * 25 24 23 40 40 H 1.08000 * 119.81167 * 179.89607 * 26 25 24 41 41 H 1.07995 * 119.95039 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 2.4939 2.0464 -1.4000 5 1 1.4439 2.6526 0.7002 6 1 3.5440 1.4401 0.7000 7 6 2.0081 -1.2052 -0.0005 8 1 3.0835 -1.2079 -0.1004 9 7 1.3322 -2.3827 0.1249 10 7 -0.0482 -2.3280 0.0398 11 6 -0.8124 -3.3414 -0.2490 12 6 -2.2641 -3.1738 -0.3279 13 8 -2.7431 -2.3793 -1.1161 14 7 -3.0706 -3.8990 0.4721 15 6 -2.5142 -4.7725 1.5174 16 6 -3.2305 -4.4539 2.8395 17 8 -4.6438 -4.5280 2.6368 18 6 -5.1512 -3.5760 1.6988 19 6 -4.5335 -3.8454 0.3219 20 16 -0.0790 -4.9213 -0.5441 21 8 0.0082 -5.0735 -1.9542 22 8 -0.7469 -5.8466 0.3027 23 6 1.5765 -4.7905 0.0546 24 6 2.3411 -5.9187 0.2507 25 6 3.6361 -5.8004 0.7253 26 6 4.1575 -4.5494 1.0023 27 6 3.3943 -3.4171 0.8071 28 6 2.0909 -3.5272 0.3269 29 1 -0.4850 0.8369 -0.0733 30 1 -2.6788 -5.8163 1.2497 31 1 -1.4457 -4.5843 1.6227 32 1 -2.9622 -3.4502 3.1693 33 1 -2.9330 -5.1781 3.5980 34 1 -4.8899 -2.5691 2.0244 35 1 -6.2355 -3.6683 1.6357 36 1 -4.8028 -3.0429 -0.3647 37 1 -4.8980 -4.7971 -0.0647 38 1 1.9297 -6.8946 0.0389 39 1 4.2382 -6.6836 0.8796 40 1 5.1674 -4.4589 1.3741 41 1 3.8079 -2.4438 1.0259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065183293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -16.410180 kcal Electronic energy + Delta-G solvation = -32404.994444 eV Core-core repulsion = 27994.695982 eV Total energy + Delta-G solvation = -4410.298462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.092 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.88623 -39.60414 -37.87507 -36.98369 -36.65014 -35.39577 -34.25347 -33.52681 -32.30663 -31.25636 -30.87926 -29.18418 -27.80677 -25.71944 -24.62951 -23.64665 -22.83662 -22.11701 -21.02490 -19.56557 -19.08131 -18.11880 -17.71307 -17.38482 -16.35799 -16.26993 -15.85235 -15.48178 -15.37559 -15.01771 -14.93649 -14.86762 -14.57575 -14.21473 -14.04649 -13.79295 -13.77553 -13.51765 -12.86086 -12.55732 -12.31769 -12.15616 -12.06471 -11.89830 -11.76031 -11.60847 -11.46548 -11.33413 -11.24726 -11.02595 -10.97659 -10.68905 -10.46439 -10.28089 -9.99440 -9.93357 -9.68073 -9.25437 -9.05528 -8.70382 -8.19769 -7.69238 -6.73739 -4.52421 0.55284 1.03948 1.41069 2.36483 2.67869 2.93313 2.95646 2.98536 3.34257 3.39837 3.57046 3.81583 3.86377 3.90928 3.97173 4.60489 4.86229 4.92992 5.07818 5.15483 5.17517 5.22984 5.38176 5.43611 5.48031 5.49784 5.60292 5.65791 5.71799 5.76778 5.96802 5.97728 6.06924 6.09504 6.34543 6.39622 6.47933 6.68441 6.78639 6.82785 7.14629 7.19218 7.32865 7.67954 8.07229 8.51797 8.65541 8.95845 10.11152 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.005384 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.232787 B = 5198.992997 C = 7160.885751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.037 3.963 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.317 4.317 8 H 0.132 0.868 9 N -0.236 5.236 10 N 0.005 4.995 11 C -0.631 4.631 12 C 0.628 3.372 13 O -0.513 6.513 14 N -0.618 5.618 15 C 0.084 3.916 16 C 0.044 3.956 17 O -0.383 6.383 18 C 0.050 3.950 19 C 0.079 3.921 20 S 2.542 3.458 21 O -0.938 6.938 22 O -0.949 6.949 23 C -0.709 4.709 24 C 0.010 3.990 25 C -0.187 4.187 26 C -0.048 4.048 27 C -0.156 4.156 28 C 0.201 3.799 29 H 0.281 0.719 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -6.190 5.839 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.150 0.850 9 N -0.020 5.020 10 N 0.175 4.825 11 C -0.888 4.888 12 C 0.413 3.587 13 O -0.386 6.386 14 N -0.355 5.355 15 C -0.039 4.039 16 C -0.034 4.034 17 O -0.302 6.302 18 C -0.028 4.028 19 C -0.044 4.044 20 S 2.722 3.278 21 O -0.934 6.934 22 O -0.944 6.944 23 C -0.804 4.804 24 C -0.010 4.010 25 C -0.208 4.208 26 C -0.068 4.068 27 C -0.178 4.178 28 C 0.092 3.908 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.084 -5.581 5.303 7.699 hybrid contribution 1.174 0.788 0.106 1.418 sum 1.090 -4.793 5.409 7.309 Atomic orbital electron populations 1.70121 1.06043 1.28762 1.33283 1.25690 0.95797 1.00401 0.96126 0.85726 0.79301 0.79463 0.79339 1.19337 1.19868 1.18516 1.20214 0.93256 0.80360 1.51239 0.85034 1.45239 0.99948 1.05711 1.51120 1.75726 0.87523 1.18444 1.00786 1.33645 1.03900 1.16707 1.34588 1.16275 0.83060 0.79413 0.79923 1.90738 1.75598 1.34369 1.37872 1.48030 1.06080 1.46346 1.35051 1.22835 0.99144 0.95444 0.86494 1.23201 0.80904 1.01995 0.97256 1.87900 1.22223 1.57797 1.62240 1.22955 0.98846 0.92745 0.88258 1.22258 0.79838 1.03659 0.98603 1.03278 0.74213 0.75075 0.75281 1.93578 1.86273 1.84765 1.28750 1.93568 1.72383 1.61395 1.67077 1.29470 1.24010 0.98604 1.28329 1.20237 0.93475 0.95414 0.91850 1.20952 0.96033 0.97618 1.06239 1.21106 0.98803 0.92122 0.94741 1.21073 0.92741 0.99948 1.04077 1.17990 0.92388 0.85672 0.94782 0.90713 0.88501 0.88642 0.92756 0.87706 0.92560 0.87848 0.88023 0.90688 0.85451 0.85679 0.85563 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.28 11.12 55.51 0.62 -18.66 16 2 C 0.04 0.86 5.48 -17.46 -0.10 0.76 16 3 Si 0.94 17.30 29.56 -169.99 -5.03 12.27 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 7 C -0.32 -7.29 9.00 -15.20 -0.14 -7.43 16 8 H 0.13 2.63 6.11 -52.49 -0.32 2.31 16 9 N -0.24 -5.63 3.68 -9.68 -0.04 -5.67 16 10 N 0.01 0.13 8.08 32.68 0.26 0.40 16 11 C -0.63 -15.20 5.54 -15.00 -0.08 -15.28 16 12 C 0.63 14.82 7.38 -13.00 -0.10 14.72 16 13 O -0.51 -13.48 16.58 5.16 0.09 -13.39 16 14 N -0.62 -11.94 3.01 -173.68 -0.52 -12.46 16 15 C 0.08 1.46 4.59 -3.32 -0.02 1.45 16 16 C 0.04 0.64 7.00 37.53 0.26 0.91 16 17 O -0.38 -5.64 10.74 -35.23 -0.38 -6.02 16 18 C 0.05 0.66 6.98 37.31 0.26 0.92 16 19 C 0.08 1.23 6.65 -3.53 -0.02 1.21 16 20 S 2.54 54.98 5.21 -107.50 -0.56 54.42 16 21 O -0.94 -22.93 17.92 -57.13 -1.02 -23.96 16 22 O -0.95 -18.82 12.93 -57.13 -0.74 -19.56 16 23 C -0.71 -14.21 5.85 -39.46 -0.23 -14.44 16 24 C 0.01 0.16 9.75 -39.71 -0.39 -0.22 16 25 C -0.19 -2.63 10.06 -39.48 -0.40 -3.02 16 26 C -0.05 -0.68 10.02 -39.66 -0.40 -1.07 16 27 C -0.16 -2.68 9.04 -39.28 -0.35 -3.04 16 28 C 0.20 4.21 6.41 -83.98 -0.54 3.67 16 29 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.10 1.63 7.16 -51.93 -0.37 1.26 16 31 H 0.10 1.76 4.96 -51.92 -0.26 1.50 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.62 7.06 -51.93 -0.37 1.25 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.14 2.24 6.35 -52.49 -0.33 1.90 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -32.58 348.76 -8.46 -41.04 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.17 Total: 7.20 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.23 Total: -20.87 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.32 Total: -36.40 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -2.06 Total: -62.92 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.56 Total: 54.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -8.46 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.633 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds