Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31231 * 1 3 3 Si 1.86808 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47161 * 270.00295 * 3 2 1 5 5 H 1.48503 * 109.46559 * 30.00375 * 3 2 1 6 6 H 1.48500 * 109.47136 * 150.00097 * 3 2 1 7 7 C 1.39163 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00439 * 173.87001 * 7 2 1 9 9 N 1.36356 * 119.99937 * 353.87421 * 7 2 1 10 10 N 1.38416 * 117.03616 * 9.77360 * 9 7 2 11 11 C 1.30170 * 124.63286 * 159.08812 * 10 9 7 12 12 C 1.46343 * 120.33849 * 180.65907 * 11 10 9 13 13 O 1.21729 * 120.00206 * 58.90243 * 12 11 10 14 14 N 1.34782 * 119.99708 * 238.90468 * 12 11 10 15 15 C 1.47146 * 120.98218 * 5.71276 * 14 12 11 16 16 C 1.53713 * 108.16265 * 129.43366 * 15 14 12 17 17 O 1.42965 * 109.14632 * 52.53707 * 16 15 14 18 18 C 1.42963 * 114.16343 * 297.29074 * 17 16 15 19 19 C 1.47152 * 120.97845 * 185.99855 * 14 12 11 20 20 S 1.76669 * 119.31440 * 0.67813 * 11 10 9 21 21 O 1.42097 * 106.67825 * 261.25630 * 20 11 10 22 22 O 1.42103 * 106.71503 * 127.62752 * 20 11 10 23 23 C 1.76521 * 105.44983 * 14.43357 * 20 11 10 24 24 C 1.37691 * 120.55556 * 165.62953 * 23 20 11 25 25 C 1.38429 * 119.88808 * 180.23104 * 24 23 20 26 26 C 1.38335 * 119.90263 * 0.06640 * 25 24 23 27 27 C 1.37933 * 120.36423 * 359.93811 * 26 25 24 28 28 C 1.38785 * 117.03742 * 189.79760 * 9 7 2 29 29 H 0.97007 * 119.99651 * 5.00643 * 1 2 3 30 30 H 1.09002 * 109.68493 * 249.21657 * 15 14 12 31 31 H 1.09007 * 109.68277 * 9.76411 * 15 14 12 32 32 H 1.09002 * 109.65584 * 292.57407 * 16 15 14 33 33 H 1.09006 * 109.48585 * 172.39659 * 16 15 14 34 34 H 1.09000 * 109.51460 * 302.65426 * 18 17 16 35 35 H 1.09006 * 109.54780 * 182.52963 * 18 17 16 36 36 H 1.08998 * 109.68135 * 350.23242 * 19 14 12 37 37 H 1.08997 * 109.68263 * 110.75258 * 19 14 12 38 38 H 1.08007 * 120.05793 * 359.95308 * 24 23 20 39 39 H 1.07999 * 120.04407 * 180.02562 * 25 24 23 40 40 H 1.08000 * 119.81167 * 179.89607 * 26 25 24 41 41 H 1.07995 * 119.95039 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 2.4939 2.0464 -1.4000 5 1 1.4439 2.6526 0.7002 6 1 3.5440 1.4401 0.7000 7 6 2.0081 -1.2052 -0.0005 8 1 3.0835 -1.2079 -0.1004 9 7 1.3322 -2.3827 0.1249 10 7 -0.0482 -2.3280 0.0398 11 6 -0.8124 -3.3414 -0.2490 12 6 -2.2641 -3.1738 -0.3279 13 8 -2.7431 -2.3793 -1.1161 14 7 -3.0706 -3.8990 0.4721 15 6 -2.5142 -4.7725 1.5174 16 6 -3.2305 -4.4539 2.8395 17 8 -4.6438 -4.5280 2.6368 18 6 -5.1512 -3.5760 1.6988 19 6 -4.5335 -3.8454 0.3219 20 16 -0.0790 -4.9213 -0.5441 21 8 0.0082 -5.0735 -1.9542 22 8 -0.7469 -5.8466 0.3027 23 6 1.5765 -4.7905 0.0546 24 6 2.3411 -5.9187 0.2507 25 6 3.6361 -5.8004 0.7253 26 6 4.1575 -4.5494 1.0023 27 6 3.3943 -3.4171 0.8071 28 6 2.0909 -3.5272 0.3269 29 1 -0.4850 0.8369 -0.0733 30 1 -2.6788 -5.8163 1.2497 31 1 -1.4457 -4.5843 1.6227 32 1 -2.9622 -3.4502 3.1693 33 1 -2.9330 -5.1781 3.5980 34 1 -4.8899 -2.5691 2.0244 35 1 -6.2355 -3.6683 1.6357 36 1 -4.8028 -3.0429 -0.3647 37 1 -4.8980 -4.7971 -0.0647 38 1 1.9297 -6.8946 0.0389 39 1 4.2382 -6.6836 0.8796 40 1 5.1674 -4.4589 1.3741 41 1 3.8079 -2.4438 1.0259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065183293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -41.940413 kcal Electronic energy + Delta-G solvation = -32406.101518 eV Core-core repulsion = 27994.695982 eV Total energy + Delta-G solvation = -4411.405536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.092 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.38665 -41.07777 -39.32109 -38.50511 -38.32128 -37.12168 -35.76894 -35.18770 -33.88992 -32.54384 -32.21461 -30.67397 -29.24101 -27.30903 -26.11868 -24.97625 -24.22910 -23.52407 -22.51563 -21.07921 -20.69561 -19.65506 -19.24317 -18.99291 -17.88133 -17.73888 -17.28760 -17.08789 -16.85754 -16.47753 -16.32139 -16.11216 -15.94438 -15.62546 -15.60439 -15.30279 -15.16212 -15.03597 -14.35429 -14.10287 -13.80339 -13.66781 -13.58196 -13.44015 -13.34207 -13.01391 -12.95259 -12.84171 -12.66148 -12.42381 -12.29982 -12.10036 -11.84922 -11.75932 -11.53269 -11.42723 -11.20100 -10.80777 -10.42201 -10.36535 -9.66173 -9.22251 -8.43134 -6.28349 -1.06035 -0.43476 0.03082 0.79817 1.11997 1.41890 1.50230 1.58097 1.71237 1.81633 2.00133 2.25872 2.31804 2.52415 2.80914 2.92788 3.44293 3.59053 3.65143 3.77071 3.97402 3.99884 4.08925 4.13423 4.22275 4.26447 4.26864 4.39321 4.50154 4.59818 4.64650 4.75219 4.77926 4.82056 5.00960 5.02015 5.16172 5.26018 5.37947 5.42317 5.62307 5.91080 6.01762 6.08205 6.41637 6.82732 6.97157 7.32032 8.42230 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.005384 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.232787 B = 5198.992997 C = 7160.885751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C -0.014 4.014 3 Si 1.011 2.989 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.232 1.232 7 C -0.328 4.328 8 H 0.160 0.840 9 N -0.252 5.252 10 N -0.034 5.034 11 C -0.675 4.675 12 C 0.618 3.382 13 O -0.564 6.564 14 N -0.613 5.613 15 C 0.078 3.922 16 C 0.050 3.950 17 O -0.383 6.383 18 C 0.055 3.945 19 C 0.068 3.932 20 S 2.553 3.447 21 O -0.981 6.981 22 O -0.938 6.938 23 C -0.715 4.715 24 C -0.011 4.011 25 C -0.157 4.157 26 C -0.030 4.030 27 C -0.161 4.161 28 C 0.165 3.835 29 H 0.275 0.725 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.181 0.819 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -8.175 8.051 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.226 4.226 3 Si 0.830 3.170 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.177 0.823 9 N -0.040 5.040 10 N 0.133 4.867 11 C -0.928 4.928 12 C 0.404 3.596 13 O -0.441 6.441 14 N -0.349 5.349 15 C -0.045 4.045 16 C -0.027 4.027 17 O -0.301 6.301 18 C -0.022 4.022 19 C -0.054 4.054 20 S 2.735 3.265 21 O -0.977 6.977 22 O -0.934 6.934 23 C -0.812 4.812 24 C -0.031 4.031 25 C -0.177 4.177 26 C -0.049 4.049 27 C -0.184 4.184 28 C 0.059 3.941 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.065 0.935 35 H 0.162 0.838 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.198 0.802 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.385 -7.676 7.549 11.285 hybrid contribution 0.412 1.142 -0.509 1.317 sum 3.797 -6.534 7.040 10.328 Atomic orbital electron populations 1.70360 1.08230 1.29035 1.35726 1.26812 0.96306 1.04089 0.95359 0.84675 0.78838 0.74391 0.79089 1.19656 1.20717 1.15402 1.20922 0.94528 0.80554 1.50252 0.82347 1.45430 0.99758 1.06941 1.51826 1.75595 0.88725 1.19850 1.02548 1.33581 1.03992 1.17866 1.37402 1.16584 0.83652 0.79450 0.79913 1.90668 1.76495 1.36808 1.40121 1.48186 1.07302 1.45255 1.34139 1.22994 0.98935 0.95194 0.87380 1.23228 0.80783 1.02538 0.96171 1.87902 1.21901 1.58033 1.62244 1.23075 1.00778 0.92059 0.86290 1.22606 0.77940 1.04479 1.00332 1.02638 0.75087 0.74301 0.74472 1.93517 1.87263 1.85350 1.31557 1.93556 1.72789 1.60752 1.66302 1.29373 1.23122 0.99943 1.28799 1.20805 0.94716 0.95296 0.92237 1.21662 0.94649 0.99659 1.01752 1.21776 1.00462 0.90710 0.91931 1.21460 0.91303 1.02224 1.03421 1.18543 0.93981 0.85190 0.96366 0.91434 0.87954 0.90087 0.93567 0.84518 0.93490 0.83809 0.89094 0.88558 0.82982 0.80454 0.80171 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.03 11.12 21.69 0.24 -43.79 16 2 C -0.01 -0.67 5.48 85.00 0.47 -0.21 16 3 Si 1.01 35.85 29.56 68.60 2.03 37.88 16 4 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.23 -7.01 7.11 99.48 0.71 -6.31 16 7 C -0.33 -15.40 9.00 84.21 0.76 -14.64 16 8 H 0.16 6.17 6.11 -2.91 -0.02 6.15 16 9 N -0.25 -12.49 3.68 -184.54 -0.68 -13.17 16 10 N -0.03 -1.88 8.08 -50.52 -0.41 -2.29 16 11 C -0.67 -35.10 5.54 87.05 0.48 -34.61 16 12 C 0.62 31.74 7.38 86.35 0.64 32.38 16 13 O -0.56 -32.59 16.58 -4.44 -0.07 -32.66 16 14 N -0.61 -25.15 3.01 -821.61 -2.48 -27.62 16 15 C 0.08 2.78 4.59 86.50 0.40 3.18 16 16 C 0.05 1.45 7.00 72.22 0.51 1.96 16 17 O -0.38 -10.78 10.74 -148.98 -1.60 -12.38 16 18 C 0.06 1.45 6.98 72.08 0.50 1.95 16 19 C 0.07 2.20 6.65 86.35 0.57 2.77 16 20 S 2.55 115.55 5.21 -56.49 -0.29 115.25 16 21 O -0.98 -50.81 17.92 -128.04 -2.29 -53.11 16 22 O -0.94 -38.23 12.93 -128.04 -1.66 -39.88 16 23 C -0.71 -28.38 5.85 22.35 0.13 -28.25 16 24 C -0.01 -0.33 9.75 22.19 0.22 -0.11 16 25 C -0.16 -3.41 10.06 22.34 0.22 -3.19 16 26 C -0.03 -0.66 10.02 22.22 0.22 -0.43 16 27 C -0.16 -5.04 9.04 22.46 0.20 -4.84 16 28 C 0.16 6.85 6.41 38.51 0.25 7.10 16 29 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.10 3.48 7.16 -2.39 -0.02 3.47 16 31 H 0.08 3.15 4.96 -2.38 -0.01 3.14 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.14 3.04 8.14 -2.38 -0.02 3.02 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.14 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.09 3.14 7.06 -2.39 -0.02 3.12 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.16 4.37 6.35 -2.91 -0.02 4.35 16 Total: -1.00 -80.21 348.76 -0.54 -80.75 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.10 Total: 27.96 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 5.57 Total: -36.95 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.32 Total: -86.87 kcal Atomic # 8 Polarization: -132.40 SS G_CDS: -5.62 Total: -138.02 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 115.55 SS G_CDS: -0.29 Total: 115.25 kcal Total: -80.21 -0.54 -80.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds