Wall clock time and date at job start Tue Mar 31 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47323 * 300.00545 * 3 2 1 6 6 H 1.48500 * 109.47011 * 60.00541 * 3 2 1 7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47197 * 180.02562 * 9 7 2 11 11 N 1.40057 * 125.87544 * 270.00911 * 10 9 7 12 12 C 1.30253 * 109.69398 * 179.97438 * 11 10 9 13 13 C 1.41164 * 108.46984 * 0.02562 * 12 11 10 14 14 C 1.36314 * 125.86985 * 90.00262 * 10 9 7 15 15 N 1.33199 * 134.61269 * 0.02562 * 14 10 9 16 16 C 1.31509 * 120.67943 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64548 * 359.66713 * 16 15 14 18 18 C 1.32865 * 121.19299 * 0.63439 * 17 16 15 19 19 N 1.38109 * 120.81166 * 179.69930 * 18 17 16 20 20 C 1.46504 * 119.99713 * 359.71766 * 19 18 17 21 21 C 1.53006 * 109.46883 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47184 * 179.97438 * 21 20 19 23 23 N 1.30811 * 126.24235 * 90.02488 * 22 21 20 24 24 N 1.28679 * 110.28647 * 179.97438 * 23 22 21 25 25 C 1.32300 * 109.48624 * 359.97438 * 24 23 22 26 26 C 1.40815 * 133.46824 * 180.02562 * 25 24 23 27 27 C 1.36023 * 119.23185 * 179.24513 * 26 25 24 28 28 C 1.40551 * 119.74023 * 0.62200 * 27 26 25 29 29 C 1.34960 * 120.36773 * 359.58244 * 28 27 26 30 30 N 1.36055 * 126.25143 * 269.71794 * 22 21 20 31 31 H 0.96998 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.46761 * 60.01124 * 9 7 2 33 33 H 1.08997 * 109.47665 * 300.00998 * 9 7 2 34 34 H 1.07996 * 125.76447 * 179.97438 * 12 11 10 35 35 H 1.08004 * 118.67444 * 180.02562 * 16 15 14 36 36 H 0.96992 * 120.00320 * 179.72068 * 19 18 17 37 37 H 1.09001 * 109.46891 * 60.00316 * 20 19 18 38 38 H 1.08993 * 109.47378 * 299.99688 * 20 19 18 39 39 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 40 40 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 41 41 H 1.08007 * 120.38330 * 359.95849 * 26 25 24 42 42 H 1.07995 * 120.13237 * 180.20589 * 27 26 25 43 43 H 1.07997 * 119.81584 * 179.60748 * 28 27 26 44 44 H 1.07995 * 119.74480 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7366 -4.2365 -1.1354 12 6 3.5498 -5.1870 -0.7724 13 6 3.5861 -5.2301 0.6381 14 6 2.7220 -4.2199 1.1041 15 7 2.5786 -4.0528 2.4177 16 6 3.2310 -4.8166 3.2665 17 7 4.0465 -5.7803 2.8768 18 6 4.2606 -6.0213 1.5878 19 7 5.1194 -7.0267 1.1892 20 6 5.8122 -7.8388 2.1926 21 6 6.6949 -8.8729 1.4908 22 6 7.4080 -9.7079 2.5229 23 7 6.9718 -10.8217 3.0524 24 7 7.8265 -11.2778 3.8994 25 6 8.8695 -10.4657 3.9547 26 6 10.0683 -10.4775 4.6933 27 6 10.9722 -9.4779 4.5085 28 6 10.6930 -8.4450 3.5972 29 6 9.5378 -8.4446 2.8994 30 7 8.6256 -9.4441 3.0698 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8904 33 1 0.6246 -2.5571 0.8895 34 1 4.1023 -5.8334 -1.4381 35 1 3.0902 -4.6531 4.3248 36 1 5.2640 -7.1951 0.2450 37 1 5.0785 -8.3507 2.8154 38 1 6.4321 -7.1949 2.8163 39 1 6.0745 -9.5168 0.8674 40 1 7.4285 -8.3614 0.8678 41 1 10.2729 -11.2771 5.3899 42 1 11.8978 -9.4744 5.0648 43 1 11.4069 -7.6475 3.4542 44 1 9.3337 -7.6462 2.2014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065550454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:28 Heat of formation + Delta-G solvation = 228.946739 kcal Electronic energy + Delta-G solvation = -30210.951766 eV Core-core repulsion = 25973.986086 eV Total energy + Delta-G solvation = -4236.965680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.146 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -43.99760 -41.42016 -38.70307 -38.56054 -36.96278 -34.85374 -33.83836 -33.10367 -31.89616 -31.36618 -31.23395 -29.74678 -28.27886 -27.22265 -24.76089 -24.54696 -23.99060 -23.67956 -23.17753 -22.16824 -21.63403 -20.15836 -18.59184 -17.98098 -17.68278 -17.42558 -16.94781 -16.68756 -16.46949 -16.23742 -15.81102 -15.39941 -15.27251 -14.79673 -14.74501 -14.44118 -13.95167 -13.64675 -13.39040 -13.22976 -13.14100 -13.11937 -12.62267 -12.49738 -12.36963 -12.14549 -12.01816 -11.68957 -11.60598 -11.20673 -11.02539 -10.99017 -10.89657 -10.79429 -10.30981 -10.12548 -10.04981 -9.84154 -9.31394 -8.72532 -8.61882 -8.57050 -8.26703 -7.69485 -6.23667 -4.30138 0.08122 0.57087 1.26236 1.76526 1.90112 2.21102 2.82223 2.84340 2.97976 3.05933 3.21601 3.28687 3.34773 3.54806 3.89109 3.92578 4.14411 4.22522 4.28916 4.35230 4.36448 4.37271 4.58529 4.64407 4.71250 4.90293 4.93688 4.97164 5.11257 5.13016 5.15403 5.31272 5.43375 5.50231 5.53475 5.55757 5.63749 5.68928 5.79011 6.25965 6.34393 6.62765 6.83037 7.01443 7.07991 7.16163 7.45511 7.69570 7.87213 7.89554 8.10898 8.19587 8.69791 8.79378 9.34879 10.84630 Molecular weight = 364.15amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.001752 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.176900 B =15975.212039 C =16583.645116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.242 5.242 12 C 0.068 3.932 13 C -0.336 4.336 14 C 0.363 3.637 15 N -0.552 5.552 16 C 0.367 3.633 17 N -0.618 5.618 18 C 0.510 3.490 19 N -0.708 5.708 20 C 0.139 3.861 21 C -0.043 4.043 22 C 0.150 3.850 23 N -0.239 5.239 24 N -0.288 5.288 25 C 0.192 3.808 26 C -0.079 4.079 27 C -0.088 4.088 28 C -0.136 4.136 29 C 0.066 3.934 30 N -0.387 5.387 31 H 0.267 0.733 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.410 0.590 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.274 -19.379 5.947 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.127 4.127 13 C -0.354 4.354 14 C 0.115 3.885 15 N -0.277 5.277 16 C 0.073 3.927 17 N -0.348 5.348 18 C 0.257 3.743 19 N -0.343 5.343 20 C 0.013 3.987 21 C -0.083 4.083 22 C -0.113 4.113 23 N -0.079 5.079 24 N -0.134 5.134 25 C -0.057 4.057 26 C -0.100 4.100 27 C -0.112 4.112 28 C -0.158 4.158 29 C -0.056 4.056 30 N -0.067 5.067 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.212 0.788 36 H 0.247 0.753 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.175 0.825 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 21.194 -19.584 6.164 29.508 hybrid contribution 1.809 1.518 -0.753 2.479 sum 23.003 -18.066 5.411 29.746 Atomic orbital electron populations 1.69927 1.05996 1.27541 1.49367 1.24906 0.94991 0.99381 0.94472 0.86284 0.79890 0.82554 0.77810 1.19739 1.20650 1.20572 1.21275 0.93555 0.89647 1.52659 0.92014 1.19816 0.85699 0.79851 1.00049 1.49468 1.35794 1.27724 0.98769 1.76943 1.11373 1.08075 1.09394 1.23366 0.99169 0.97938 0.92254 1.19597 1.12549 1.07893 0.95334 1.18945 0.91127 0.89917 0.88527 1.67524 1.29258 1.30873 1.00014 1.24417 0.85161 0.83906 0.99208 1.67949 1.26789 1.25516 1.14550 1.17828 0.84170 0.84033 0.88254 1.44122 1.46765 1.34484 1.08895 1.21174 0.95260 0.91499 0.90751 1.20194 0.98347 0.96053 0.93684 1.24431 0.84849 0.98425 1.03591 1.74268 1.21474 1.06390 1.05754 1.75009 0.99095 1.22810 1.16447 1.22373 0.99189 0.88415 0.95720 1.20325 0.89336 1.00922 0.99415 1.21231 0.99725 0.92947 0.97309 1.21004 0.96563 1.00775 0.97411 1.21725 0.89504 0.92232 1.02143 1.43699 1.14945 1.18981 1.29105 0.92296 0.92754 0.92216 0.80028 0.78837 0.75306 0.90307 0.91510 0.87018 0.89140 0.82488 0.83371 0.82522 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.26 6.96 6.19 -5.19 -0.03 6.93 16 10 N -0.33 -7.82 3.63 -61.64 -0.22 -8.05 16 11 N -0.24 -5.06 12.45 30.80 0.38 -4.67 16 12 C 0.07 1.09 11.87 -17.11 -0.20 0.89 16 13 C -0.34 -5.88 6.14 -106.82 -0.66 -6.53 16 14 C 0.36 7.88 8.04 -156.23 -1.26 6.63 16 15 N -0.55 -11.53 10.47 -13.97 -0.15 -11.67 16 16 C 0.37 6.12 12.24 -92.11 -1.13 4.99 16 17 N -0.62 -9.67 9.69 -13.62 -0.13 -9.80 16 18 C 0.51 7.50 7.55 -154.85 -1.17 6.33 16 19 N -0.71 -6.89 5.68 -60.08 -0.34 -7.23 16 20 C 0.14 1.18 5.71 -4.04 -0.02 1.16 16 21 C -0.04 -0.26 5.85 -27.88 -0.16 -0.43 16 22 C 0.15 1.39 7.39 -154.23 -1.14 0.25 16 23 N -0.24 -3.01 12.19 32.94 0.40 -2.61 16 24 N -0.29 -3.68 12.31 31.14 0.38 -3.29 16 25 C 0.19 1.86 7.92 -156.07 -1.24 0.62 16 26 C -0.08 -0.47 10.11 -39.40 -0.40 -0.86 16 27 C -0.09 -0.30 10.07 -39.51 -0.40 -0.70 16 28 C -0.14 -0.43 9.98 -39.87 -0.40 -0.83 16 29 C 0.07 0.32 10.91 -16.69 -0.18 0.14 16 30 N -0.39 -3.18 2.95 -59.73 -0.18 -3.35 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.20 2.46 8.06 -52.48 -0.42 2.04 16 36 H 0.41 2.83 8.34 -40.82 -0.34 2.49 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.16 0.62 8.06 -52.48 -0.42 0.19 16 42 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 43 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 44 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -37.88 389.99 -12.02 -49.91 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.96 Total: -1.63 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -8.80 Total: 4.91 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: 0.89 Total: -75.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.88 -12.02 -49.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065550454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.852 kcal (2) G-P(sol) polarization free energy of solvation -37.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 240.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds