Wall clock time and date at job start Tue Mar 31 2020 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47323 * 300.00545 * 3 2 1 6 6 H 1.48500 * 109.47011 * 60.00541 * 3 2 1 7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47197 * 180.02562 * 9 7 2 11 11 N 1.40057 * 125.87544 * 270.00911 * 10 9 7 12 12 C 1.30253 * 109.69398 * 179.97438 * 11 10 9 13 13 C 1.41164 * 108.46984 * 0.02562 * 12 11 10 14 14 C 1.36314 * 125.86985 * 90.00262 * 10 9 7 15 15 N 1.33199 * 134.61269 * 0.02562 * 14 10 9 16 16 C 1.31509 * 120.67943 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64548 * 359.66713 * 16 15 14 18 18 C 1.32865 * 121.19299 * 0.63439 * 17 16 15 19 19 N 1.38109 * 120.81166 * 179.69930 * 18 17 16 20 20 C 1.46504 * 119.99713 * 359.71766 * 19 18 17 21 21 C 1.53006 * 109.46883 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47184 * 179.97438 * 21 20 19 23 23 N 1.30811 * 126.24235 * 90.02488 * 22 21 20 24 24 N 1.28679 * 110.28647 * 179.97438 * 23 22 21 25 25 C 1.32300 * 109.48624 * 359.97438 * 24 23 22 26 26 C 1.40815 * 133.46824 * 180.02562 * 25 24 23 27 27 C 1.36023 * 119.23185 * 179.24513 * 26 25 24 28 28 C 1.40551 * 119.74023 * 0.62200 * 27 26 25 29 29 C 1.34960 * 120.36773 * 359.58244 * 28 27 26 30 30 N 1.36055 * 126.25143 * 269.71794 * 22 21 20 31 31 H 0.96998 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.46761 * 60.01124 * 9 7 2 33 33 H 1.08997 * 109.47665 * 300.00998 * 9 7 2 34 34 H 1.07996 * 125.76447 * 179.97438 * 12 11 10 35 35 H 1.08004 * 118.67444 * 180.02562 * 16 15 14 36 36 H 0.96992 * 120.00320 * 179.72068 * 19 18 17 37 37 H 1.09001 * 109.46891 * 60.00316 * 20 19 18 38 38 H 1.08993 * 109.47378 * 299.99688 * 20 19 18 39 39 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 40 40 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 41 41 H 1.08007 * 120.38330 * 359.95849 * 26 25 24 42 42 H 1.07995 * 120.13237 * 180.20589 * 27 26 25 43 43 H 1.07997 * 119.81584 * 179.60748 * 28 27 26 44 44 H 1.07995 * 119.74480 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7366 -4.2365 -1.1354 12 6 3.5498 -5.1870 -0.7724 13 6 3.5861 -5.2301 0.6381 14 6 2.7220 -4.2199 1.1041 15 7 2.5786 -4.0528 2.4177 16 6 3.2310 -4.8166 3.2665 17 7 4.0465 -5.7803 2.8768 18 6 4.2606 -6.0213 1.5878 19 7 5.1194 -7.0267 1.1892 20 6 5.8122 -7.8388 2.1926 21 6 6.6949 -8.8729 1.4908 22 6 7.4080 -9.7079 2.5229 23 7 6.9718 -10.8217 3.0524 24 7 7.8265 -11.2778 3.8994 25 6 8.8695 -10.4657 3.9547 26 6 10.0683 -10.4775 4.6933 27 6 10.9722 -9.4779 4.5085 28 6 10.6930 -8.4450 3.5972 29 6 9.5378 -8.4446 2.8994 30 7 8.6256 -9.4441 3.0698 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8904 33 1 0.6246 -2.5571 0.8895 34 1 4.1023 -5.8334 -1.4381 35 1 3.0902 -4.6531 4.3248 36 1 5.2640 -7.1951 0.2450 37 1 5.0785 -8.3507 2.8154 38 1 6.4321 -7.1949 2.8163 39 1 6.0745 -9.5168 0.8674 40 1 7.4285 -8.3614 0.8678 41 1 10.2729 -11.2771 5.3899 42 1 11.8978 -9.4744 5.0648 43 1 11.4069 -7.6475 3.4542 44 1 9.3337 -7.6462 2.2014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065550454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:27 Heat of formation + Delta-G solvation = 205.233028 kcal Electronic energy + Delta-G solvation = -30211.980070 eV Core-core repulsion = 25973.986086 eV Total energy + Delta-G solvation = -4237.993984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.146 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -44.57408 -42.81978 -39.90816 -39.12897 -37.96081 -35.83798 -35.40743 -34.18062 -33.16723 -32.69818 -31.91084 -30.78071 -29.32292 -28.87482 -25.75430 -25.30292 -25.18251 -24.77628 -24.20836 -23.39488 -22.22664 -21.55685 -19.42987 -19.05544 -18.80861 -18.72122 -18.04599 -17.70180 -17.56991 -16.79499 -16.75105 -16.65336 -16.18663 -16.08197 -15.61093 -15.53144 -15.13885 -14.98117 -14.75868 -14.53904 -13.99356 -13.68431 -13.65454 -13.47908 -13.26244 -13.12830 -13.02582 -12.99417 -12.75483 -12.51153 -12.38572 -12.32456 -12.21625 -12.06599 -11.76878 -11.55806 -11.51108 -10.76042 -10.63352 -10.57314 -10.09198 -9.77167 -9.07686 -9.02585 -8.35391 -6.52368 -0.28051 -0.04870 0.09448 0.51973 1.26165 1.33090 1.35495 1.40017 1.50638 1.59075 1.65210 2.00129 2.31801 2.39504 2.94360 2.99938 3.03941 3.25926 3.38842 3.44974 3.51742 3.63677 3.69452 3.80407 3.85383 3.93814 4.10263 4.11927 4.17262 4.37624 4.44007 4.65299 4.73408 4.82111 4.85815 4.87596 4.93965 5.01356 5.07872 5.13096 5.20657 5.46197 5.48036 5.55672 5.72852 5.78047 5.91178 5.91905 6.10299 6.53402 6.58693 6.79771 7.17169 7.44315 7.45701 8.72507 Molecular weight = 364.15amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.001752 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.176900 B =15975.212039 C =16583.645116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.047 0.953 9 C 0.284 3.716 10 N -0.366 5.366 11 N -0.290 5.290 12 C 0.103 3.897 13 C -0.341 4.341 14 C 0.334 3.666 15 N -0.604 5.604 16 C 0.376 3.624 17 N -0.619 5.619 18 C 0.519 3.481 19 N -0.678 5.678 20 C 0.145 3.855 21 C -0.030 4.030 22 C 0.145 3.855 23 N -0.285 5.285 24 N -0.348 5.348 25 C 0.183 3.817 26 C -0.112 4.112 27 C -0.061 4.061 28 C -0.129 4.129 29 C 0.049 3.951 30 N -0.390 5.390 31 H 0.274 0.726 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.245 0.755 35 H 0.227 0.773 36 H 0.429 0.571 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.195 0.805 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.664 -19.194 5.643 34.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.065 0.935 9 C 0.165 3.835 10 N -0.153 5.153 11 N -0.105 5.105 12 C -0.092 4.092 13 C -0.359 4.359 14 C 0.087 3.913 15 N -0.331 5.331 16 C 0.083 3.917 17 N -0.350 5.350 18 C 0.265 3.735 19 N -0.312 5.312 20 C 0.020 3.980 21 C -0.070 4.070 22 C -0.119 4.119 23 N -0.124 5.124 24 N -0.193 5.193 25 C -0.067 4.067 26 C -0.133 4.133 27 C -0.086 4.086 28 C -0.150 4.150 29 C -0.073 4.073 30 N -0.069 5.069 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.261 0.739 35 H 0.243 0.757 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.184 0.816 42 H 0.202 0.798 43 H 0.212 0.788 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 25.630 -19.480 5.838 32.718 hybrid contribution 0.709 1.303 -0.528 1.574 sum 26.339 -18.177 5.310 32.440 Atomic orbital electron populations 1.70025 1.07429 1.28821 1.49577 1.25830 0.95924 1.02966 0.93621 0.85226 0.78299 0.77917 0.78495 1.19678 1.19303 1.19519 1.21410 0.92907 0.91082 1.53384 0.93469 1.19124 0.86006 0.81005 0.97403 1.49087 1.37213 1.28501 1.00453 1.76898 1.14080 1.10488 1.09042 1.24343 0.96410 0.95937 0.92477 1.19709 1.12448 1.07537 0.96238 1.19383 0.92098 0.91036 0.88749 1.67527 1.31771 1.33359 1.00433 1.25106 0.83707 0.82801 1.00087 1.68102 1.26777 1.25235 1.14870 1.17925 0.83938 0.84235 0.87426 1.44128 1.44432 1.32228 1.10394 1.21136 0.94871 0.91575 0.90441 1.20213 0.98667 0.95221 0.92908 1.24787 0.85406 0.97990 1.03711 1.74106 1.22837 1.08456 1.07018 1.74856 1.00849 1.25141 1.18480 1.22867 0.99443 0.88336 0.96035 1.20640 0.89106 1.02961 1.00626 1.21762 0.99777 0.91162 0.95888 1.21586 0.96380 1.01120 0.95870 1.22472 0.89457 0.92099 1.03225 1.43849 1.15103 1.19371 1.28614 0.91735 0.95089 0.95111 0.73911 0.75687 0.73109 0.92461 0.91469 0.86109 0.85468 0.81576 0.79774 0.78764 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.60 13.29 21.45 0.28 -54.32 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.98 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.53 9.39 25.60 0.24 -32.29 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.28 16.08 6.19 85.63 0.53 16.61 16 10 N -0.37 -18.09 3.63 -348.93 -1.27 -19.36 16 11 N -0.29 -12.23 12.45 -56.46 -0.70 -12.94 16 12 C 0.10 3.10 11.87 85.65 1.02 4.12 16 13 C -0.34 -11.48 6.14 -21.29 -0.13 -11.61 16 14 C 0.33 14.88 8.04 134.14 1.08 15.96 16 15 N -0.60 -25.94 10.47 -198.10 -2.07 -28.01 16 16 C 0.38 12.35 12.24 180.87 2.21 14.56 16 17 N -0.62 -18.38 9.69 -197.01 -1.91 -20.29 16 18 C 0.52 14.04 7.55 133.64 1.01 15.05 16 19 N -0.68 -10.63 5.68 -343.99 -1.95 -12.59 16 20 C 0.14 2.06 5.71 86.38 0.49 2.55 16 21 C -0.03 -0.28 5.85 29.85 0.17 -0.10 16 22 C 0.15 2.53 7.39 137.71 1.02 3.55 16 23 N -0.29 -7.41 12.19 -49.69 -0.61 -8.02 16 24 N -0.35 -9.37 12.31 -55.40 -0.68 -10.05 16 25 C 0.18 3.50 7.92 134.07 1.06 4.56 16 26 C -0.11 -1.18 10.11 22.39 0.23 -0.95 16 27 C -0.06 -0.19 10.07 22.32 0.22 0.04 16 28 C -0.13 -0.22 9.98 22.08 0.22 0.00 16 29 C 0.05 0.28 10.91 83.23 0.91 1.19 16 30 N -0.39 -5.71 2.95 -342.89 -1.01 -6.72 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.24 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.23 5.51 8.06 -2.91 -0.02 5.49 16 36 H 0.43 3.72 8.34 -92.71 -0.77 2.94 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.18 -0.78 8.06 -2.91 -0.02 -0.80 16 43 H 0.20 -1.11 8.06 -2.91 -0.02 -1.14 16 44 H 0.20 -0.16 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -92.43 389.99 3.15 -89.28 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.30 Total: 1.65 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 10.75 Total: 34.69 kcal Atomic # 7 Polarization: -162.37 SS G_CDS: -9.92 Total: -172.30 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -92.43 3.15 -89.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065550454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 294.515 kcal (2) G-P(sol) polarization free energy of solvation -92.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds