Wall clock time and date at job start Tue Mar 31 2020 07:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46908 * 2 1 4 4 C 1.50696 * 109.47111 * 120.00109 * 2 1 3 5 5 H 1.08006 * 120.00005 * 120.00127 * 4 2 1 6 6 C 1.37877 * 120.00452 * 300.00129 * 4 2 1 7 7 N 1.31513 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00566 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47320 * 89.99409 * 8 6 4 10 10 H 1.48502 * 109.47327 * 209.99887 * 8 6 4 11 11 H 1.48510 * 109.47019 * 329.99835 * 8 6 4 12 12 N 1.46895 * 109.46838 * 240.00164 * 2 1 3 13 13 C 1.46904 * 111.00229 * 60.00235 * 12 2 1 14 14 C 1.53239 * 109.33940 * 187.25295 * 13 12 2 15 15 N 1.47080 * 108.52180 * 306.16463 * 14 13 12 16 16 C 1.34769 * 120.88376 * 231.19218 * 15 14 13 17 17 O 1.21557 * 120.00085 * 5.78735 * 16 15 14 18 18 C 1.47808 * 120.00069 * 185.79509 * 16 15 14 19 19 C 1.39607 * 120.13021 * 219.74394 * 18 16 15 20 20 C 1.37907 * 119.86014 * 179.97438 * 19 18 16 21 21 C 1.38474 * 120.13564 * 359.97438 * 20 19 18 22 22 Br 1.89109 * 119.86341 * 179.97438 * 21 20 19 23 23 C 1.38480 * 120.27374 * 0.25972 * 21 20 19 24 24 C 1.37908 * 120.13097 * 359.48505 * 23 21 20 25 25 C 1.47080 * 118.23444 * 51.46146 * 15 14 13 26 26 C 1.46909 * 111.00076 * 184.30073 * 12 2 1 27 27 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47136 * 299.99836 * 1 2 3 29 29 H 1.08996 * 109.47426 * 59.99743 * 1 2 3 30 30 H 0.96996 * 120.00529 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.48977 * 67.29177 * 13 12 2 32 32 H 1.08995 * 109.51005 * 307.22346 * 13 12 2 33 33 H 1.08995 * 109.62765 * 186.46028 * 14 13 12 34 34 H 1.08994 * 109.63237 * 65.87745 * 14 13 12 35 35 H 1.07999 * 120.07008 * 359.97438 * 19 18 16 36 36 H 1.08002 * 119.93496 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.93114 * 179.74500 * 23 21 20 38 38 H 1.07991 * 120.07025 * 180.28018 * 24 23 21 39 39 H 1.09001 * 109.63231 * 68.24911 * 25 15 14 40 40 H 1.09003 * 109.62854 * 188.83198 * 25 15 14 41 41 H 1.09001 * 109.48881 * 292.71231 * 26 12 2 42 42 H 1.09005 * 109.48810 * 52.78704 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5442 4.4118 10 1 1.3444 -0.9491 5.1123 11 1 2.4880 -2.5655 3.7121 12 7 2.0196 -0.6924 -1.1994 13 6 1.5486 -0.0263 -2.4211 14 6 1.9254 -0.8755 -3.6397 15 7 3.3712 -1.1417 -3.5946 16 6 4.1535 -0.8964 -4.6642 17 8 3.6874 -0.3522 -5.6461 18 6 5.5783 -1.2894 -4.6435 19 6 6.5452 -0.4488 -5.1981 20 6 7.8730 -0.8207 -5.1752 21 6 8.2480 -2.0247 -4.6033 22 35 10.0708 -2.5274 -4.5768 23 6 7.2930 -2.8650 -4.0559 24 6 5.9626 -2.5018 -4.0679 25 6 3.9396 -1.6885 -2.3531 26 6 3.4845 -0.8018 -1.1831 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.7089 1.1613 3.4844 31 1 2.0155 0.9552 -2.5032 32 1 0.4655 0.0885 -2.3787 33 1 1.6814 -0.3335 -4.5533 34 1 1.3786 -1.8179 -3.6126 35 1 6.2539 0.4907 -5.6441 36 1 8.6220 -0.1711 -5.6036 37 1 7.5912 -3.8047 -3.6149 38 1 5.2193 -3.1558 -3.6367 39 1 3.5826 -2.7076 -2.2046 40 1 5.0279 -1.6842 -2.4157 41 1 3.9244 0.1906 -1.2825 42 1 3.8053 -1.2498 -0.2426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065563219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:27 Heat of formation + Delta-G solvation = 15.782897 kcal Electronic energy + Delta-G solvation = -24839.488752 eV Core-core repulsion = 21252.229327 eV Total energy + Delta-G solvation = -3587.259425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64686 -38.84668 -37.62472 -35.02019 -33.05108 -32.44734 -31.55118 -30.86213 -29.94429 -29.12189 -26.17843 -25.48609 -23.65685 -23.34884 -22.59016 -21.24419 -20.06491 -19.09541 -17.49143 -16.66082 -16.40922 -16.04791 -15.63394 -15.24061 -14.84085 -14.70762 -14.31701 -14.00711 -13.84212 -13.71645 -13.55082 -13.53613 -13.05979 -12.46605 -12.05982 -11.95610 -11.82386 -11.66075 -11.24882 -11.11036 -11.04941 -10.88139 -10.76541 -10.67570 -10.64388 -10.23864 -10.12657 -9.95749 -9.82123 -9.37661 -9.05305 -8.94022 -8.55404 -8.47979 -7.32035 -6.08834 -4.14478 0.41430 0.92809 1.22617 2.57176 2.95409 3.24941 3.32470 3.34991 3.38397 4.30933 4.33807 4.40019 4.50160 4.75716 4.88724 4.97365 5.16129 5.22071 5.27769 5.36377 5.46175 5.55377 5.61392 5.66581 5.74211 5.78586 5.84452 5.95466 5.98995 6.26028 6.32535 6.41100 6.46257 6.59845 6.77876 6.97473 7.04643 7.37431 7.46637 7.61066 7.73363 8.07727 8.09859 8.22327 8.47398 8.91085 9.51126 10.97883 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.002508 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.406174 B =11163.410070 C =13034.412871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.532 5.532 13 C 0.037 3.963 14 C 0.118 3.882 15 N -0.598 5.598 16 C 0.555 3.445 17 O -0.542 6.542 18 C -0.107 4.107 19 C -0.062 4.062 20 C -0.097 4.097 21 C -0.074 4.074 22 Br -0.049 7.049 23 C -0.097 4.097 24 C -0.082 4.082 25 C 0.099 3.901 26 C 0.049 3.951 27 H 0.035 0.965 28 H 0.086 0.914 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.563 -6.761 -14.989 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.257 5.257 13 C -0.092 4.092 14 C -0.004 4.004 15 N -0.330 5.330 16 C 0.343 3.657 17 O -0.421 6.421 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.153 4.153 22 Br 0.037 6.963 23 C -0.117 4.117 24 C -0.101 4.101 25 C -0.023 4.023 26 C -0.080 4.080 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.696 -7.013 -15.324 23.029 hybrid contribution 0.217 0.532 1.016 1.167 sum 15.913 -6.481 -14.308 22.359 Atomic orbital electron populations 1.21849 0.97547 0.99730 0.99983 1.19232 0.92428 0.91980 0.85580 0.98428 1.21113 1.31379 1.12387 0.89729 0.91806 1.24934 0.95097 0.95030 0.99076 1.69884 1.36644 1.22940 1.23555 0.86527 0.78499 0.80055 0.82515 1.20761 1.21232 1.19779 1.62113 1.08276 1.52863 1.02496 1.22470 1.01392 0.94843 0.90536 1.21827 0.78764 1.00586 0.99229 1.48164 1.09014 1.62833 1.13017 1.18270 0.85532 0.78863 0.83026 1.90770 1.74955 1.42910 1.33446 1.20123 0.93915 0.96336 1.00646 1.21219 0.91298 0.99507 0.96117 1.21081 0.96535 0.95121 0.98935 1.22015 0.91109 0.97997 1.04215 1.96753 1.09524 1.92105 1.97919 1.21086 0.91952 0.99580 0.99039 1.21517 0.96135 0.95826 0.96665 1.22489 0.98273 0.98453 0.83132 1.22440 0.89925 0.97660 0.97964 0.94560 0.89592 0.97249 0.92884 0.95603 0.89389 0.89316 0.90689 0.84171 0.84338 0.84218 0.83876 0.90359 0.89565 0.95672 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.75 37.16 0.33 -2.78 16 2 C 0.21 5.11 2.07 -68.87 -0.14 4.97 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.51 -13.09 7.84 -34.44 -0.27 -13.36 16 5 H 0.06 1.61 6.40 -52.48 -0.34 1.27 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.53 -10.58 4.49 -227.43 -1.02 -11.60 16 13 C 0.04 0.64 5.40 -3.70 -0.02 0.62 16 14 C 0.12 1.78 6.61 -3.60 -0.02 1.76 16 15 N -0.60 -8.76 3.00 -173.31 -0.52 -9.28 16 16 C 0.56 8.26 7.34 -12.35 -0.09 8.16 16 17 O -0.54 -9.61 16.38 5.32 0.09 -9.53 16 18 C -0.11 -1.29 5.14 -104.96 -0.54 -1.83 16 19 C -0.06 -0.67 9.64 -39.19 -0.38 -1.05 16 20 C -0.10 -0.90 9.77 -39.62 -0.39 -1.29 16 21 C -0.07 -0.69 6.23 -39.41 -0.25 -0.93 16 22 Br -0.05 -0.41 33.69 -68.01 -2.29 -2.70 16 23 C -0.10 -0.87 9.77 -39.61 -0.39 -1.26 16 24 C -0.08 -0.82 7.41 -39.19 -0.29 -1.11 16 25 C 0.10 1.35 5.03 -3.37 -0.02 1.34 16 26 C 0.05 0.87 5.39 -3.46 -0.02 0.85 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 2.22 6.07 -51.92 -0.32 1.90 16 29 H 0.01 0.18 6.25 -51.93 -0.32 -0.14 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.52 5.95 -51.93 -0.31 1.21 16 33 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.26 6.49 -52.49 -0.34 0.92 16 39 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 40 H 0.09 1.01 4.89 -51.93 -0.25 0.76 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.91 5.98 -51.93 -0.31 1.60 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -29.22 351.73 -10.91 -40.13 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.49 Total: 0.67 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.58 Total: -4.39 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.91 Total: -44.88 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.29 Total: -2.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.22 -10.91 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.908 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds