Wall clock time and date at job start Tue Mar 31 2020 07:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46908 * 2 1 4 4 C 1.50696 * 109.47111 * 120.00109 * 2 1 3 5 5 H 1.08006 * 120.00005 * 120.00127 * 4 2 1 6 6 C 1.37877 * 120.00452 * 300.00129 * 4 2 1 7 7 N 1.31513 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00566 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47320 * 89.99409 * 8 6 4 10 10 H 1.48502 * 109.47327 * 209.99887 * 8 6 4 11 11 H 1.48510 * 109.47019 * 329.99835 * 8 6 4 12 12 N 1.46895 * 109.46838 * 240.00164 * 2 1 3 13 13 C 1.46904 * 111.00229 * 60.00235 * 12 2 1 14 14 C 1.53239 * 109.33940 * 187.25295 * 13 12 2 15 15 N 1.47080 * 108.52180 * 306.16463 * 14 13 12 16 16 C 1.34769 * 120.88376 * 231.19218 * 15 14 13 17 17 O 1.21557 * 120.00085 * 5.78735 * 16 15 14 18 18 C 1.47808 * 120.00069 * 185.79509 * 16 15 14 19 19 C 1.39607 * 120.13021 * 219.74394 * 18 16 15 20 20 C 1.37907 * 119.86014 * 179.97438 * 19 18 16 21 21 C 1.38474 * 120.13564 * 359.97438 * 20 19 18 22 22 Br 1.89109 * 119.86341 * 179.97438 * 21 20 19 23 23 C 1.38480 * 120.27374 * 0.25972 * 21 20 19 24 24 C 1.37908 * 120.13097 * 359.48505 * 23 21 20 25 25 C 1.47080 * 118.23444 * 51.46146 * 15 14 13 26 26 C 1.46909 * 111.00076 * 184.30073 * 12 2 1 27 27 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47136 * 299.99836 * 1 2 3 29 29 H 1.08996 * 109.47426 * 59.99743 * 1 2 3 30 30 H 0.96996 * 120.00529 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.48977 * 67.29177 * 13 12 2 32 32 H 1.08995 * 109.51005 * 307.22346 * 13 12 2 33 33 H 1.08995 * 109.62765 * 186.46028 * 14 13 12 34 34 H 1.08994 * 109.63237 * 65.87745 * 14 13 12 35 35 H 1.07999 * 120.07008 * 359.97438 * 19 18 16 36 36 H 1.08002 * 119.93496 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.93114 * 179.74500 * 23 21 20 38 38 H 1.07991 * 120.07025 * 180.28018 * 24 23 21 39 39 H 1.09001 * 109.63231 * 68.24911 * 25 15 14 40 40 H 1.09003 * 109.62854 * 188.83198 * 25 15 14 41 41 H 1.09001 * 109.48881 * 292.71231 * 26 12 2 42 42 H 1.09005 * 109.48810 * 52.78704 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5442 4.4118 10 1 1.3444 -0.9491 5.1123 11 1 2.4880 -2.5655 3.7121 12 7 2.0196 -0.6924 -1.1994 13 6 1.5486 -0.0263 -2.4211 14 6 1.9254 -0.8755 -3.6397 15 7 3.3712 -1.1417 -3.5946 16 6 4.1535 -0.8964 -4.6642 17 8 3.6874 -0.3522 -5.6461 18 6 5.5783 -1.2894 -4.6435 19 6 6.5452 -0.4488 -5.1981 20 6 7.8730 -0.8207 -5.1752 21 6 8.2480 -2.0247 -4.6033 22 35 10.0708 -2.5274 -4.5768 23 6 7.2930 -2.8650 -4.0559 24 6 5.9626 -2.5018 -4.0679 25 6 3.9396 -1.6885 -2.3531 26 6 3.4845 -0.8018 -1.1831 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.7089 1.1613 3.4844 31 1 2.0155 0.9552 -2.5032 32 1 0.4655 0.0885 -2.3787 33 1 1.6814 -0.3335 -4.5533 34 1 1.3786 -1.8179 -3.6126 35 1 6.2539 0.4907 -5.6441 36 1 8.6220 -0.1711 -5.6036 37 1 7.5912 -3.8047 -3.6149 38 1 5.2193 -3.1558 -3.6367 39 1 3.5826 -2.7076 -2.2046 40 1 5.0279 -1.6842 -2.4157 41 1 3.9244 0.1906 -1.2825 42 1 3.8053 -1.2498 -0.2426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065563219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:26 Heat of formation + Delta-G solvation = -0.824535 kcal Electronic energy + Delta-G solvation = -24840.208905 eV Core-core repulsion = 21252.229327 eV Total energy + Delta-G solvation = -3587.979577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71907 -39.88311 -38.98177 -36.53060 -34.53846 -33.60543 -32.44855 -32.00141 -31.34626 -30.28841 -27.61968 -27.32302 -24.85203 -24.33887 -23.65051 -22.57969 -21.60732 -20.34135 -18.61377 -18.35694 -17.68208 -16.98041 -16.90121 -16.67916 -16.01258 -15.79437 -15.71758 -15.48409 -15.24084 -14.74553 -14.71158 -14.58602 -14.34887 -13.92331 -13.51163 -13.31931 -12.93968 -12.88109 -12.66255 -12.52766 -12.45088 -12.40170 -12.27646 -12.09244 -11.90631 -11.84694 -11.64346 -11.32177 -11.03471 -10.84072 -10.50690 -10.13013 -9.90885 -9.71968 -9.00291 -8.10130 -6.22385 -0.40980 0.19040 0.51549 1.45093 1.46826 1.51226 1.56621 1.84581 2.43754 2.52709 3.16765 3.25182 3.31562 3.66982 3.79123 3.96206 4.03900 4.14769 4.21159 4.23860 4.28341 4.42167 4.47883 4.53827 4.69070 4.79676 4.85346 4.87828 4.94412 4.96334 5.02825 5.05111 5.09592 5.14716 5.21482 5.39664 5.49844 5.58804 5.71864 5.78074 6.22616 6.25280 6.37232 6.66311 6.91827 6.94318 7.47279 8.96143 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.002508 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.406174 B =11163.410070 C =13034.412871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.044 1.044 4 C -0.517 4.517 5 H 0.069 0.931 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.531 5.531 13 C 0.040 3.960 14 C 0.126 3.874 15 N -0.601 5.601 16 C 0.556 3.444 17 O -0.577 6.577 18 C -0.127 4.127 19 C -0.071 4.071 20 C -0.094 4.094 21 C -0.077 4.077 22 Br -0.038 7.038 23 C -0.092 4.092 24 C -0.079 4.079 25 C 0.112 3.888 26 C 0.048 3.952 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.008 0.992 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.006 0.994 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.287 -8.983 -15.326 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 H -0.027 1.027 4 C -0.555 4.555 5 H 0.087 0.913 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.256 5.256 13 C -0.089 4.089 14 C 0.003 3.997 15 N -0.332 5.332 16 C 0.346 3.654 17 O -0.458 6.458 18 C -0.130 4.130 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.157 4.157 22 Br 0.048 6.952 23 C -0.112 4.112 24 C -0.098 4.098 25 C -0.010 4.010 26 C -0.081 4.081 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.024 0.976 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.439 -9.254 -15.671 25.206 hybrid contribution -0.245 1.261 1.067 1.670 sum 17.194 -7.993 -14.604 23.933 Atomic orbital electron populations 1.21670 0.97167 0.99557 0.99658 1.19026 0.92754 0.89926 0.87209 1.02689 1.21432 1.31152 1.12421 0.90516 0.91298 1.25739 0.95337 0.95706 1.02073 1.70031 1.37868 1.24369 1.24027 0.85516 0.77774 0.79374 0.78748 1.20370 1.21429 1.18644 1.62082 1.09697 1.51973 1.01834 1.22486 1.01323 0.94441 0.90628 1.21713 0.79548 1.00769 0.97625 1.48219 1.08820 1.62814 1.13387 1.18688 0.86534 0.77862 0.82317 1.90746 1.75845 1.44518 1.34692 1.20007 0.92263 0.97862 1.02875 1.21277 0.91905 0.99515 0.96328 1.21253 0.96175 0.95456 0.98523 1.22225 0.91859 0.97960 1.03681 1.96778 1.08625 1.91958 1.97845 1.21351 0.91329 1.00220 0.98290 1.21640 0.96979 0.95037 0.96187 1.22476 0.99646 0.98026 0.80810 1.22479 0.88460 0.97554 0.99585 0.94422 0.92306 0.95216 0.93051 0.97417 0.89193 0.89254 0.89081 0.84527 0.82568 0.81938 0.82443 0.88366 0.87156 0.97569 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.75 71.98 0.63 -5.17 16 2 C 0.22 10.66 2.07 44.17 0.09 10.75 16 3 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 4 C -0.52 -26.83 7.84 25.60 0.20 -26.63 16 5 H 0.07 3.43 6.40 -2.91 -0.02 3.42 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 12 N -0.53 -21.10 4.49 -873.47 -3.92 -25.02 16 13 C 0.04 1.41 5.40 86.38 0.47 1.88 16 14 C 0.13 3.67 6.61 86.35 0.57 4.24 16 15 N -0.60 -16.82 3.00 -820.52 -2.46 -19.28 16 16 C 0.56 16.04 7.34 86.78 0.64 16.68 16 17 O -0.58 -20.40 16.38 -3.90 -0.06 -20.46 16 18 C -0.13 -2.86 5.14 -20.08 -0.10 -2.97 16 19 C -0.07 -1.45 9.64 22.52 0.22 -1.23 16 20 C -0.09 -1.57 9.77 22.25 0.22 -1.35 16 21 C -0.08 -1.24 6.23 22.38 0.14 -1.10 16 22 Br -0.04 -0.54 33.69 -20.37 -0.69 -1.23 16 23 C -0.09 -1.36 9.77 22.25 0.22 -1.15 16 24 C -0.08 -1.36 7.41 22.52 0.17 -1.19 16 25 C 0.11 2.84 5.03 86.50 0.43 3.28 16 26 C 0.05 1.69 5.39 86.53 0.47 2.16 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 3.12 6.07 -2.38 -0.01 3.10 16 29 H 0.03 1.23 6.25 -2.39 -0.01 1.22 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.09 3.08 5.95 -2.39 -0.01 3.07 16 33 H 0.09 2.64 7.04 -2.39 -0.02 2.62 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.16 2.20 6.49 -2.92 -0.02 2.19 16 39 H 0.10 2.17 8.05 -2.39 -0.02 2.15 16 40 H 0.11 2.30 4.89 -2.39 -0.01 2.29 16 41 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.09 3.40 5.98 -2.38 -0.01 3.39 16 Total: -1.00 -63.90 351.73 0.97 -62.92 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.04 Total: 11.97 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.80 Total: -0.82 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -6.14 Total: -96.19 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.69 Total: -1.23 kcal Total: -63.90 0.97 -62.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.098 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds