Wall clock time and date at job start Tue Mar 31 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.50708 * 109.47224 * 240.00212 * 2 1 3 5 5 H 1.07995 * 120.00240 * 240.00260 * 4 2 1 6 6 C 1.37871 * 119.99851 * 59.99803 * 4 2 1 7 7 N 1.31519 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47100 * 59.99726 * 8 6 4 10 10 H 1.48496 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46731 * 300.00446 * 8 6 4 12 12 N 1.46893 * 109.47158 * 120.00242 * 2 1 3 13 13 C 1.46907 * 111.00179 * 59.30177 * 12 2 1 14 14 C 1.53237 * 109.33993 * 172.74600 * 13 12 2 15 15 N 1.47080 * 108.52297 * 53.83090 * 14 13 12 16 16 C 1.34774 * 120.88284 * 128.83456 * 15 14 13 17 17 O 1.21560 * 120.00025 * 176.18643 * 16 15 14 18 18 C 1.47795 * 120.00036 * 356.18870 * 16 15 14 19 19 C 1.39605 * 120.13391 * 49.37104 * 18 16 15 20 20 C 1.37909 * 119.86267 * 179.76570 * 19 18 16 21 21 C 1.38485 * 120.13535 * 0.48807 * 20 19 18 22 22 Br 1.89096 * 119.86424 * 179.74283 * 21 20 19 23 23 C 1.38476 * 120.26976 * 359.76689 * 21 20 19 24 24 C 1.37911 * 120.13202 * 359.97438 * 23 21 20 25 25 C 1.47089 * 118.23619 * 308.81331 * 15 14 13 26 26 C 1.46895 * 111.00130 * 295.00013 * 12 2 1 27 27 H 1.09005 * 109.47117 * 60.00006 * 1 2 3 28 28 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47006 * 299.99612 * 1 2 3 30 30 H 0.96999 * 120.00242 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.48927 * 292.70657 * 13 12 2 32 32 H 1.09000 * 109.49081 * 52.78584 * 13 12 2 33 33 H 1.08995 * 109.63120 * 294.12169 * 14 13 12 34 34 H 1.08996 * 109.62692 * 173.53827 * 14 13 12 35 35 H 1.07999 * 120.07038 * 0.02562 * 19 18 16 36 36 H 1.07999 * 119.93517 * 180.23412 * 20 19 18 37 37 H 1.07993 * 119.93411 * 179.97438 * 23 21 20 38 38 H 1.08007 * 120.06221 * 180.02562 * 24 23 21 39 39 H 1.08994 * 109.62962 * 291.47460 * 25 15 14 40 40 H 1.08996 * 109.62741 * 170.88931 * 25 15 14 41 41 H 1.09006 * 109.49296 * 307.21412 * 26 12 2 42 42 H 1.08997 * 109.49365 * 67.26294 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0081 9 1 1.8259 -2.5201 -4.0079 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1993 13 6 1.5351 -2.0787 1.2417 14 6 2.2095 -2.8168 2.4029 15 7 1.9933 -2.0446 3.6359 16 6 1.5022 -2.6338 4.7441 17 8 1.3950 -1.9973 5.7741 18 6 1.0942 -4.0538 4.7069 19 6 1.9537 -5.0163 4.1742 20 6 1.5693 -6.3405 4.1468 21 6 0.3294 -6.7147 4.6371 22 35 -0.1929 -8.5315 4.5890 23 6 -0.5297 -5.7639 5.1619 24 6 -0.1544 -4.4374 5.1997 25 6 2.3278 -0.6123 3.6275 26 6 1.6487 0.0390 2.4180 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7089 1.1615 -3.4844 31 1 0.4548 -2.0820 1.3869 32 1 1.7779 -2.5777 0.3035 33 1 3.2784 -2.9054 2.2091 34 1 1.7705 -3.8087 2.5105 35 1 2.9194 -4.7252 3.7882 36 1 2.2348 -7.0865 3.7384 37 1 -1.4956 -6.0617 5.5424 38 1 -0.8252 -3.6968 5.6096 39 1 3.4081 -0.4890 3.5513 40 1 1.9670 -0.1467 4.5446 41 1 1.9740 1.0760 2.3330 42 1 0.5669 0.0067 2.5465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065563222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:29 Heat of formation + Delta-G solvation = 14.053819 kcal Electronic energy + Delta-G solvation = -24978.240103 eV Core-core repulsion = 21390.905699 eV Total energy + Delta-G solvation = -3587.334404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.64348 -38.88508 -37.72571 -35.04254 -33.03610 -32.43353 -31.56442 -30.85081 -29.78977 -29.07332 -26.07848 -25.35496 -23.72095 -23.49151 -22.81510 -21.47293 -20.17264 -18.82936 -17.42151 -16.68779 -16.29970 -16.02435 -15.67713 -15.13733 -14.85700 -14.77294 -14.39692 -14.06508 -13.85892 -13.71350 -13.52857 -13.47041 -12.75916 -12.63872 -12.08177 -11.95855 -11.72706 -11.62695 -11.35376 -11.23207 -11.10692 -10.95941 -10.80150 -10.64720 -10.62940 -10.43370 -10.10257 -9.96731 -9.79573 -9.37454 -9.04990 -8.96271 -8.55376 -8.45195 -7.29338 -6.08118 -4.13084 0.45572 0.92800 1.23791 2.54962 2.94022 3.27326 3.32690 3.33963 3.34829 4.30488 4.34507 4.40838 4.50006 4.77966 4.88734 4.98972 5.17985 5.23226 5.25594 5.36419 5.46356 5.55226 5.62777 5.67142 5.73987 5.78876 5.84463 5.96616 5.98475 6.26023 6.32539 6.41143 6.44606 6.58242 6.70240 6.78158 7.03348 7.35476 7.42395 7.62231 7.72752 8.00383 8.08749 8.27254 8.47541 8.91803 9.52503 10.98813 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002605 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.963998 B =10745.837882 C =12460.614856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.213 3.787 3 H 0.041 0.959 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.530 5.530 13 C 0.048 3.952 14 C 0.097 3.903 15 N -0.596 5.596 16 C 0.555 3.445 17 O -0.542 6.542 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.095 4.095 21 C -0.076 4.076 22 Br -0.049 7.049 23 C -0.094 4.094 24 C -0.065 4.065 25 C 0.118 3.882 26 C 0.039 3.961 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -16.537 14.977 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.107 3.893 3 H 0.059 0.941 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.254 5.254 13 C -0.081 4.081 14 C -0.025 4.025 15 N -0.328 5.328 16 C 0.343 3.657 17 O -0.420 6.420 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.155 4.155 22 Br 0.037 6.963 23 C -0.114 4.114 24 C -0.085 4.085 25 C -0.004 4.004 26 C -0.090 4.090 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.256 -16.749 15.311 22.728 hybrid contribution -0.555 0.020 -0.990 1.135 sum -1.810 -16.729 14.321 22.096 Atomic orbital electron populations 1.22404 1.00803 0.99270 1.00604 1.19300 0.89744 0.94595 0.85669 0.94101 1.21046 1.30953 1.12659 0.89658 0.91932 1.24926 0.95110 0.95072 0.99035 1.69871 1.36752 1.22917 1.23643 0.86586 0.79250 0.79599 0.82119 1.20329 1.21380 1.20177 1.62319 1.59497 1.01222 1.02386 1.22342 0.96451 0.91451 0.97845 1.22378 1.01683 0.94998 0.83453 1.48173 1.62272 1.10833 1.11548 1.18273 0.77546 0.86347 0.83531 1.90780 1.55639 1.65000 1.30598 1.20098 0.96036 0.93872 1.00593 1.21407 0.99974 0.91931 0.96993 1.21075 0.94862 0.96503 0.98997 1.21994 0.97535 0.91227 1.04791 1.96750 1.91690 1.10041 1.97822 1.21072 0.99570 0.91935 0.98825 1.21172 0.95026 0.95781 0.96513 1.21829 1.00429 0.78996 0.99157 1.22398 0.97589 0.98360 0.90670 0.89288 0.95291 0.97369 0.92854 0.95201 0.88335 0.90369 0.89583 0.84048 0.84228 0.84331 0.84311 0.90692 0.89382 0.90089 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.28 37.16 0.31 -3.68 16 2 C 0.21 5.03 2.35 -68.86 -0.16 4.87 16 3 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 4 C -0.50 -12.96 7.84 -34.44 -0.27 -13.23 16 5 H 0.06 1.58 6.77 -52.49 -0.36 1.23 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.53 -10.41 4.61 -227.73 -1.05 -11.46 16 13 C 0.05 0.84 4.78 -3.70 -0.02 0.83 16 14 C 0.10 1.33 5.42 -3.60 -0.02 1.31 16 15 N -0.60 -8.70 3.01 -173.59 -0.52 -9.22 16 16 C 0.56 8.23 7.25 -12.35 -0.09 8.15 16 17 O -0.54 -9.59 16.50 5.31 0.09 -9.50 16 18 C -0.10 -1.24 5.04 -104.97 -0.53 -1.77 16 19 C -0.08 -0.84 7.37 -39.19 -0.29 -1.13 16 20 C -0.09 -0.86 9.77 -39.61 -0.39 -1.24 16 21 C -0.08 -0.72 6.23 -39.40 -0.25 -0.96 16 22 Br -0.05 -0.42 33.69 -68.01 -2.29 -2.71 16 23 C -0.09 -0.89 9.77 -39.61 -0.39 -1.28 16 24 C -0.07 -0.71 9.73 -39.19 -0.38 -1.10 16 25 C 0.12 1.77 6.59 -3.60 -0.02 1.75 16 26 C 0.04 0.67 5.14 -3.70 -0.02 0.65 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.03 0.65 6.56 -51.93 -0.34 0.31 16 29 H 0.01 0.16 6.69 -51.93 -0.35 -0.19 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.03 0.55 6.71 -51.93 -0.35 0.21 16 32 H 0.10 1.85 6.31 -51.93 -0.33 1.52 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.01 4.66 -51.93 -0.24 0.77 16 35 H 0.14 1.23 6.97 -52.49 -0.37 0.86 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.31 7.08 -51.93 -0.37 0.94 16 41 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 42 H 0.03 0.57 6.81 -51.93 -0.35 0.22 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -28.93 350.36 -10.94 -39.88 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.45 Total: 1.59 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.61 Total: -5.34 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.94 Total: -44.62 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.93 -10.94 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.930 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds