Wall clock time and date at job start Tue Mar 31 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.50708 * 109.47224 * 240.00212 * 2 1 3 5 5 H 1.07995 * 120.00240 * 240.00260 * 4 2 1 6 6 C 1.37871 * 119.99851 * 59.99803 * 4 2 1 7 7 N 1.31519 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47100 * 59.99726 * 8 6 4 10 10 H 1.48496 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46731 * 300.00446 * 8 6 4 12 12 N 1.46893 * 109.47158 * 120.00242 * 2 1 3 13 13 C 1.46907 * 111.00179 * 59.30177 * 12 2 1 14 14 C 1.53237 * 109.33993 * 172.74600 * 13 12 2 15 15 N 1.47080 * 108.52297 * 53.83090 * 14 13 12 16 16 C 1.34774 * 120.88284 * 128.83456 * 15 14 13 17 17 O 1.21560 * 120.00025 * 176.18643 * 16 15 14 18 18 C 1.47795 * 120.00036 * 356.18870 * 16 15 14 19 19 C 1.39605 * 120.13391 * 49.37104 * 18 16 15 20 20 C 1.37909 * 119.86267 * 179.76570 * 19 18 16 21 21 C 1.38485 * 120.13535 * 0.48807 * 20 19 18 22 22 Br 1.89096 * 119.86424 * 179.74283 * 21 20 19 23 23 C 1.38476 * 120.26976 * 359.76689 * 21 20 19 24 24 C 1.37911 * 120.13202 * 359.97438 * 23 21 20 25 25 C 1.47089 * 118.23619 * 308.81331 * 15 14 13 26 26 C 1.46895 * 111.00130 * 295.00013 * 12 2 1 27 27 H 1.09005 * 109.47117 * 60.00006 * 1 2 3 28 28 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47006 * 299.99612 * 1 2 3 30 30 H 0.96999 * 120.00242 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.48927 * 292.70657 * 13 12 2 32 32 H 1.09000 * 109.49081 * 52.78584 * 13 12 2 33 33 H 1.08995 * 109.63120 * 294.12169 * 14 13 12 34 34 H 1.08996 * 109.62692 * 173.53827 * 14 13 12 35 35 H 1.07999 * 120.07038 * 0.02562 * 19 18 16 36 36 H 1.07999 * 119.93517 * 180.23412 * 20 19 18 37 37 H 1.07993 * 119.93411 * 179.97438 * 23 21 20 38 38 H 1.08007 * 120.06221 * 180.02562 * 24 23 21 39 39 H 1.08994 * 109.62962 * 291.47460 * 25 15 14 40 40 H 1.08996 * 109.62741 * 170.88931 * 25 15 14 41 41 H 1.09006 * 109.49296 * 307.21412 * 26 12 2 42 42 H 1.08997 * 109.49365 * 67.26294 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0081 9 1 1.8259 -2.5201 -4.0079 10 1 1.8259 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1993 13 6 1.5351 -2.0787 1.2417 14 6 2.2095 -2.8168 2.4029 15 7 1.9933 -2.0446 3.6359 16 6 1.5022 -2.6338 4.7441 17 8 1.3950 -1.9973 5.7741 18 6 1.0942 -4.0538 4.7069 19 6 1.9537 -5.0163 4.1742 20 6 1.5693 -6.3405 4.1468 21 6 0.3294 -6.7147 4.6371 22 35 -0.1929 -8.5315 4.5890 23 6 -0.5297 -5.7639 5.1619 24 6 -0.1544 -4.4374 5.1997 25 6 2.3278 -0.6123 3.6275 26 6 1.6487 0.0390 2.4180 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7089 1.1615 -3.4844 31 1 0.4548 -2.0820 1.3869 32 1 1.7779 -2.5777 0.3035 33 1 3.2784 -2.9054 2.2091 34 1 1.7705 -3.8087 2.5105 35 1 2.9194 -4.7252 3.7882 36 1 2.2348 -7.0865 3.7384 37 1 -1.4956 -6.0617 5.5424 38 1 -0.8252 -3.6968 5.6096 39 1 3.4081 -0.4890 3.5513 40 1 1.9670 -0.1467 4.5446 41 1 1.9740 1.0760 2.3330 42 1 0.5669 0.0067 2.5465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065563222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:29 Heat of formation + Delta-G solvation = -2.277446 kcal Electronic energy + Delta-G solvation = -24978.948279 eV Core-core repulsion = 21390.905699 eV Total energy + Delta-G solvation = -3588.042580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71859 -39.94219 -39.05534 -36.52895 -34.50175 -33.62184 -32.44560 -31.95286 -31.10065 -30.31307 -27.53057 -27.28044 -24.90600 -24.56342 -23.73661 -22.85652 -21.55201 -20.09437 -18.60616 -18.12815 -17.71648 -17.00172 -16.84985 -16.68992 -15.98814 -15.94727 -15.73556 -15.56059 -15.01642 -14.81731 -14.64593 -14.46496 -14.26257 -13.98014 -13.67098 -13.14631 -13.00553 -12.91632 -12.78887 -12.61662 -12.56163 -12.38229 -12.29708 -12.11439 -11.86605 -11.85243 -11.62289 -11.31959 -11.01482 -10.90927 -10.47230 -10.13135 -9.89593 -9.72577 -8.90988 -8.08835 -6.20060 -0.36326 0.18802 0.52280 1.46636 1.47159 1.48097 1.55223 1.84962 2.44984 2.49692 3.20937 3.26796 3.31712 3.68000 3.79052 3.96331 4.05811 4.15008 4.22685 4.27630 4.28189 4.44910 4.47838 4.55051 4.69772 4.73625 4.84745 4.85397 4.86675 4.95688 5.01749 5.04570 5.05331 5.16707 5.19570 5.36089 5.53431 5.58666 5.70162 5.76257 6.17436 6.24934 6.45472 6.68099 6.92946 6.93838 7.49571 8.97330 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.002605 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.963998 B =10745.837882 C =12460.614856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.291 1.291 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.050 3.950 14 C 0.109 3.891 15 N -0.598 5.598 16 C 0.558 3.442 17 O -0.576 6.576 18 C -0.123 4.123 19 C -0.082 4.082 20 C -0.090 4.090 21 C -0.080 4.080 22 Br -0.038 7.038 23 C -0.092 4.092 24 C -0.074 4.074 25 C 0.126 3.874 26 C 0.043 3.957 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -19.091 15.278 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.111 3.889 3 H 0.025 0.975 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.196 1.196 12 N -0.257 5.257 13 C -0.079 4.079 14 C -0.013 4.013 15 N -0.330 5.330 16 C 0.347 3.653 17 O -0.457 6.457 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.160 4.160 22 Br 0.047 6.953 23 C -0.112 4.112 24 C -0.094 4.094 25 C 0.003 3.997 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.484 -19.328 15.620 24.856 hybrid contribution -0.834 0.777 -1.028 1.535 sum -1.317 -18.551 14.592 23.639 Atomic orbital electron populations 1.22204 1.00727 0.98956 0.99729 1.19038 0.89630 0.93111 0.87146 0.97458 1.21357 1.30651 1.12664 0.90512 0.91619 1.25700 0.95358 0.95738 1.01939 1.70015 1.37953 1.24307 1.24033 0.85603 0.78779 0.78746 0.78459 1.19351 1.21643 1.19641 1.62227 1.59464 1.02217 1.01837 1.22346 0.96071 0.90347 0.99121 1.22361 1.02344 0.95194 0.81371 1.48223 1.62208 1.10633 1.11895 1.18665 0.76490 0.87331 0.82818 1.90756 1.56926 1.66200 1.31799 1.19994 0.97212 0.92563 1.02828 1.21551 1.00143 0.91889 0.96521 1.21341 0.94928 0.96533 0.98184 1.22205 0.97738 0.91778 1.04276 1.96773 1.91650 1.09095 1.97749 1.21246 1.00337 0.91251 0.98366 1.21244 0.94865 0.96541 0.96758 1.21703 1.00767 0.79430 0.97770 1.22402 0.97087 0.98559 0.90562 0.92031 0.95166 0.96250 0.93087 0.96489 0.89485 0.88814 0.87124 0.82537 0.81964 0.82600 0.84533 0.89528 0.89255 0.90127 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.44 8.28 71.98 0.60 -6.84 16 2 C 0.22 10.48 2.35 44.17 0.10 10.59 16 3 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 4 C -0.51 -26.47 7.84 25.60 0.20 -26.27 16 5 H 0.07 3.28 6.77 -2.91 -0.02 3.26 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -51.74 11.32 21.45 0.24 -51.50 16 8 Si 0.96 41.73 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.53 -20.88 4.61 -874.40 -4.03 -24.91 16 13 C 0.05 1.71 4.78 86.38 0.41 2.12 16 14 C 0.11 2.76 5.42 86.35 0.47 3.23 16 15 N -0.60 -16.61 3.01 -821.41 -2.47 -19.08 16 16 C 0.56 15.92 7.25 86.77 0.63 16.55 16 17 O -0.58 -20.19 16.50 -3.90 -0.06 -20.26 16 18 C -0.12 -2.77 5.04 -20.09 -0.10 -2.87 16 19 C -0.08 -1.41 7.37 22.52 0.17 -1.24 16 20 C -0.09 -1.35 9.77 22.25 0.22 -1.13 16 21 C -0.08 -1.30 6.23 22.39 0.14 -1.16 16 22 Br -0.04 -0.56 33.69 -20.37 -0.69 -1.25 16 23 C -0.09 -1.55 9.77 22.25 0.22 -1.33 16 24 C -0.07 -1.53 9.73 22.52 0.22 -1.31 16 25 C 0.13 3.65 6.59 86.35 0.57 4.22 16 26 C 0.04 1.48 5.14 86.38 0.44 1.92 16 27 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 28 H 0.03 1.37 6.56 -2.39 -0.02 1.36 16 29 H 0.02 0.83 6.69 -2.39 -0.02 0.81 16 30 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.02 0.62 6.71 -2.39 -0.02 0.61 16 32 H 0.09 3.18 6.31 -2.39 -0.02 3.17 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.29 4.66 -2.39 -0.01 2.28 16 35 H 0.16 2.18 6.97 -2.91 -0.02 2.16 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.09 2.61 7.08 -2.39 -0.02 2.60 16 41 H 0.08 2.74 8.05 -2.38 -0.02 2.72 16 42 H 0.02 0.71 6.81 -2.39 -0.02 0.69 16 Total: -1.00 -62.48 350.36 0.79 -61.69 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.04 Total: 14.05 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.73 Total: -2.49 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -6.26 Total: -95.49 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.69 Total: -1.25 kcal Total: -62.48 0.79 -61.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -62.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds