Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35834 * 117.00053 * 2 1 4 4 C 1.38895 * 119.91137 * 180.02562 * 3 2 1 5 5 C 1.37823 * 120.08301 * 180.02562 * 4 3 2 6 6 C 1.39620 * 119.91709 * 359.97438 * 5 4 3 7 7 C 1.47771 * 120.08844 * 179.97438 * 6 5 4 8 8 N 1.31267 * 126.38493 * 359.68969 * 7 6 5 9 9 N 1.28670 * 109.24979 * 179.82816 * 8 7 6 10 10 C 1.30353 * 109.53489 * 0.44204 * 9 8 7 11 11 C 1.50701 * 126.17945 * 179.69781 * 10 9 8 12 12 N 1.46495 * 109.47296 * 90.03981 * 11 10 9 13 13 C 1.36941 * 119.99826 * 89.99878 * 12 11 10 14 14 H 1.08000 * 119.99967 * 323.10367 * 13 12 11 15 15 C 1.38816 * 119.99965 * 143.10062 * 13 12 11 16 16 N 1.31618 * 120.00076 * 340.17499 * 15 13 12 17 17 Si 1.86800 * 119.99718 * 160.17565 * 15 13 12 18 18 H 1.48508 * 109.47148 * 90.00135 * 17 15 13 19 19 H 1.48494 * 109.46893 * 209.99796 * 17 15 13 20 20 H 1.48498 * 109.47242 * 330.00207 * 17 15 13 21 21 C 1.46496 * 120.00477 * 269.99933 * 12 11 10 22 22 C 1.50695 * 109.47170 * 85.00446 * 21 12 11 23 23 C 1.38239 * 120.00211 * 263.38315 * 22 21 12 24 24 C 1.38235 * 120.00209 * 179.76249 * 23 22 21 25 25 C 1.38239 * 119.99737 * 0.51139 * 24 23 22 26 26 C 1.38234 * 120.00233 * 359.74498 * 25 24 23 27 27 C 1.38232 * 120.00186 * 83.65674 * 22 21 12 28 28 O 1.34453 * 107.63297 * 359.73063 * 10 9 8 29 29 C 1.39624 * 119.82215 * 359.97438 * 6 5 4 30 30 C 1.37816 * 119.91471 * 0.02562 * 29 6 5 31 31 H 1.08999 * 109.47261 * 299.99609 * 1 2 3 32 32 H 1.09006 * 109.47372 * 59.99554 * 1 2 3 33 33 H 1.09006 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.07993 * 119.95826 * 0.27659 * 4 3 2 35 35 H 1.08005 * 120.04307 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46895 * 210.04687 * 11 10 9 37 37 H 1.09001 * 109.46852 * 330.03755 * 11 10 9 38 38 H 0.96997 * 120.00175 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47339 * 205.00735 * 21 12 11 40 40 H 1.09004 * 109.46935 * 325.00941 * 21 12 11 41 41 H 1.08003 * 119.99752 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.99988 * 180.22646 * 24 23 22 43 43 H 1.08000 * 119.99809 * 179.71725 * 25 24 23 44 44 H 1.07998 * 120.00271 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99906 * 0.02562 * 27 22 21 46 46 H 1.08003 * 120.03947 * 179.97438 * 29 6 5 47 47 H 1.08000 * 119.95736 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 3.4328 1.2808 -0.0005 5 6 4.0622 2.5069 0.0000 6 6 3.3036 3.6791 0.0005 7 6 3.9744 4.9957 0.0017 8 7 5.2695 5.2098 0.0080 9 7 5.4900 6.4774 0.0033 10 6 4.3544 7.1174 0.0033 11 6 4.1765 8.6138 0.0049 12 7 4.1189 9.1003 -1.3757 13 6 2.9142 9.1877 -2.0211 14 1 2.1558 8.4374 -1.8529 15 6 2.6679 10.2407 -2.8914 16 7 3.3887 11.3394 -2.8158 17 14 1.3133 10.0983 -4.1698 18 1 0.0378 10.5993 -3.5975 19 1 1.6717 10.9066 -5.3628 20 1 1.1535 8.6759 -4.5653 21 6 5.3498 9.4933 -2.0660 22 6 5.9950 8.2752 -2.6750 23 6 7.0102 7.6213 -2.0020 24 6 7.5987 6.5011 -2.5585 25 6 7.1792 6.0409 -3.7927 26 6 6.1677 6.6979 -4.4681 27 6 5.5756 7.8150 -3.9091 28 8 3.3705 6.2010 0.0023 29 6 1.9093 3.6039 0.0000 30 6 1.2874 2.3740 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 4.0189 0.3738 -0.0055 35 1 5.1409 2.5610 0.0000 36 1 3.2500 8.8690 0.5192 37 1 5.0175 9.0791 0.5193 38 1 3.2168 12.0750 -3.4242 39 1 5.1126 10.2102 -2.8520 40 1 6.0363 9.9499 -1.3529 41 1 7.3411 7.9837 -1.0400 42 1 8.3893 5.9881 -2.0310 43 1 7.6422 5.1684 -4.2295 44 1 5.8403 6.3386 -5.4325 45 1 4.7858 8.3287 -4.4371 46 1 1.3191 4.5083 0.0008 47 1 0.2090 2.3150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065565567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = 80.720556 kcal Electronic energy + Delta-G solvation = -32568.208672 eV Core-core repulsion = 28298.344353 eV Total energy + Delta-G solvation = -4269.864319 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.42056 -40.32694 -38.47855 -37.72508 -35.90550 -35.47343 -32.50959 -31.65904 -31.39315 -30.84359 -30.08041 -29.17139 -27.71253 -26.36452 -25.64936 -23.65993 -23.27133 -22.38025 -21.74766 -21.33237 -21.08823 -20.17559 -18.49491 -17.32905 -16.98133 -16.68742 -16.38745 -16.04855 -15.88324 -15.69717 -15.04935 -14.65970 -14.58478 -14.25364 -14.12364 -13.85556 -13.67037 -13.58413 -13.44809 -13.01075 -12.73991 -12.64160 -12.38752 -12.20988 -11.91293 -11.71043 -11.69970 -11.53012 -11.31390 -11.09984 -11.07232 -11.00848 -10.72343 -10.65909 -10.40942 -10.23448 -10.14747 -9.94927 -9.50757 -9.26922 -8.75975 -8.11475 -8.02646 -7.83721 -6.98805 -6.07683 -3.66109 0.68030 1.12929 2.02445 2.19940 2.22065 2.78783 2.95317 3.01754 3.22456 3.31074 3.35249 3.65984 4.23072 4.30196 4.52005 4.58705 4.61638 4.77838 4.82247 4.99233 5.04526 5.14185 5.15155 5.22473 5.40310 5.43005 5.59830 5.61762 5.64715 5.73501 5.77073 5.84203 6.00395 6.01217 6.10776 6.21355 6.24378 6.29562 6.35811 6.37137 6.41730 6.44603 6.54271 6.82402 6.88042 7.05460 7.23257 7.27846 7.38248 7.57454 7.63911 7.83200 8.23090 8.86895 8.93014 9.46499 10.00883 10.95058 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003193 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.089087 B = 8766.419980 C =10051.491467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.140 3.860 4 C -0.153 4.153 5 C -0.033 4.033 6 C -0.043 4.043 7 C 0.173 3.827 8 N -0.275 5.275 9 N -0.292 5.292 10 C 0.178 3.822 11 C 0.223 3.777 12 N -0.551 5.551 13 C -0.276 4.276 14 H 0.063 0.937 15 C 0.025 3.975 16 N -0.878 5.878 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.173 3.827 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.100 4.100 28 O -0.219 6.219 29 C -0.047 4.047 30 C -0.209 4.209 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.260 0.740 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.136 0.864 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -15.859 5.065 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.094 3.906 4 C -0.171 4.171 5 C -0.053 4.053 6 C -0.045 4.045 7 C -0.036 4.036 8 N -0.123 5.123 9 N -0.139 5.139 10 C -0.035 4.035 11 C 0.091 3.909 12 N -0.267 5.267 13 C -0.405 4.405 14 H 0.081 0.919 15 C -0.177 4.177 16 N -0.518 5.518 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.049 3.951 22 C -0.092 4.092 23 C -0.107 4.107 24 C -0.137 4.137 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.119 4.119 28 O -0.098 6.098 29 C -0.067 4.067 30 C -0.227 4.227 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.058 0.942 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.547 -15.978 4.958 16.738 hybrid contribution -2.272 0.053 -0.914 2.449 sum -2.819 -15.925 4.044 16.670 Atomic orbital electron populations 1.23107 0.78140 1.04076 1.01682 1.86058 1.21628 1.26861 1.88282 1.19222 0.92413 0.84160 0.94819 1.20320 0.91201 0.98410 1.07190 1.20978 1.00733 0.89471 0.94102 1.17139 0.92388 0.86400 1.08549 1.25154 0.88738 0.86134 1.03524 1.74547 1.12026 1.09446 1.16326 1.74326 1.23511 0.97365 1.18660 1.31013 0.80561 0.97288 0.94672 1.19630 1.02795 0.78583 0.89888 1.43841 1.03647 1.71993 1.07253 1.19029 0.92520 1.05535 1.23371 0.91899 1.25135 0.97931 0.94008 1.00584 1.69966 1.41283 1.03364 1.37188 0.86381 0.81655 0.78046 0.81271 1.20795 1.21060 1.20115 1.20196 0.85371 0.91969 0.97598 1.21079 0.94544 0.99593 0.94022 1.20969 0.96040 0.95218 0.98438 1.20901 1.00418 0.96993 0.95422 1.20882 0.98780 1.00009 0.96126 1.20999 0.97816 0.96989 0.99712 1.21030 0.98799 0.96222 0.95864 1.84899 1.40153 1.15369 1.69382 1.21085 0.93000 0.98059 0.94513 1.21122 1.00351 0.91676 1.09586 0.92406 0.92370 0.88129 0.84298 0.83677 0.89555 0.89058 0.92951 0.87199 0.94165 0.86798 0.87440 0.87695 0.87593 0.86694 0.84656 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.12 10.49 -19.22 -0.20 -3.33 16 3 C 0.14 1.55 6.69 -39.10 -0.26 1.29 16 4 C -0.15 -1.70 9.97 -39.49 -0.39 -2.09 16 5 C -0.03 -0.43 9.69 -39.22 -0.38 -0.81 16 6 C -0.04 -0.64 5.87 -104.97 -0.62 -1.26 16 7 C 0.17 3.18 7.99 -13.90 -0.11 3.07 16 8 N -0.27 -5.37 11.91 32.06 0.38 -4.98 16 9 N -0.29 -5.87 9.63 32.58 0.31 -5.56 16 10 C 0.18 3.57 7.80 -12.91 -0.10 3.47 16 11 C 0.22 4.39 6.33 -5.20 -0.03 4.36 16 12 N -0.55 -12.64 2.41 -175.99 -0.42 -13.07 16 13 C -0.28 -6.97 9.48 -15.06 -0.14 -7.11 16 14 H 0.06 1.64 7.90 -52.49 -0.41 1.22 16 15 C 0.03 0.64 4.95 -17.43 -0.09 0.56 16 16 N -0.88 -23.06 11.39 55.49 0.63 -22.43 16 17 Si 0.90 20.32 29.60 -169.99 -5.03 15.29 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.17 3.87 5.40 -5.20 -0.03 3.84 16 22 C -0.09 -1.90 5.20 -104.63 -0.54 -2.44 16 23 C -0.09 -1.71 7.29 -39.58 -0.29 -1.99 16 24 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.14 -2.59 10.05 -39.58 -0.40 -2.98 16 27 C -0.10 -2.12 9.73 -39.58 -0.39 -2.51 16 28 O -0.22 -4.37 10.67 3.89 0.04 -4.33 16 29 C -0.05 -0.61 9.72 -39.22 -0.38 -0.99 16 30 C -0.21 -2.27 9.02 -39.49 -0.36 -2.62 16 31 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 32 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.15 1.79 7.86 -52.48 -0.41 1.38 16 36 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 37 H 0.09 1.61 7.94 -51.93 -0.41 1.20 16 38 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 39 H 0.11 2.74 5.45 -51.93 -0.28 2.46 16 40 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 41 H 0.11 2.14 7.92 -52.48 -0.42 1.73 16 42 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.11 2.55 8.06 -52.49 -0.42 2.13 16 46 H 0.14 1.73 7.93 -52.48 -0.42 1.31 16 47 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 LS Contribution 401.72 15.07 6.05 6.05 Total: -1.00 -29.65 401.72 -8.52 -38.17 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.98 Total: 6.72 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -4.31 Total: -12.54 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.90 Total: -46.04 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.16 Total: -7.65 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.65 -8.52 -38.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065565567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.889 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds