Wall clock time and date at job start Tue Mar 31 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35834 * 117.00053 * 2 1 4 4 C 1.38895 * 119.91137 * 180.02562 * 3 2 1 5 5 C 1.37823 * 120.08301 * 180.02562 * 4 3 2 6 6 C 1.39620 * 119.91709 * 359.97438 * 5 4 3 7 7 C 1.47771 * 120.08844 * 179.97438 * 6 5 4 8 8 N 1.31267 * 126.38493 * 359.68969 * 7 6 5 9 9 N 1.28670 * 109.24979 * 179.82816 * 8 7 6 10 10 C 1.30353 * 109.53489 * 0.44204 * 9 8 7 11 11 C 1.50701 * 126.17945 * 179.69781 * 10 9 8 12 12 N 1.46495 * 109.47296 * 90.03981 * 11 10 9 13 13 C 1.36941 * 119.99826 * 89.99878 * 12 11 10 14 14 H 1.08000 * 119.99967 * 323.10367 * 13 12 11 15 15 C 1.38816 * 119.99965 * 143.10062 * 13 12 11 16 16 N 1.31618 * 120.00076 * 340.17499 * 15 13 12 17 17 Si 1.86800 * 119.99718 * 160.17565 * 15 13 12 18 18 H 1.48508 * 109.47148 * 90.00135 * 17 15 13 19 19 H 1.48494 * 109.46893 * 209.99796 * 17 15 13 20 20 H 1.48498 * 109.47242 * 330.00207 * 17 15 13 21 21 C 1.46496 * 120.00477 * 269.99933 * 12 11 10 22 22 C 1.50695 * 109.47170 * 85.00446 * 21 12 11 23 23 C 1.38239 * 120.00211 * 263.38315 * 22 21 12 24 24 C 1.38235 * 120.00209 * 179.76249 * 23 22 21 25 25 C 1.38239 * 119.99737 * 0.51139 * 24 23 22 26 26 C 1.38234 * 120.00233 * 359.74498 * 25 24 23 27 27 C 1.38232 * 120.00186 * 83.65674 * 22 21 12 28 28 O 1.34453 * 107.63297 * 359.73063 * 10 9 8 29 29 C 1.39624 * 119.82215 * 359.97438 * 6 5 4 30 30 C 1.37816 * 119.91471 * 0.02562 * 29 6 5 31 31 H 1.08999 * 109.47261 * 299.99609 * 1 2 3 32 32 H 1.09006 * 109.47372 * 59.99554 * 1 2 3 33 33 H 1.09006 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.07993 * 119.95826 * 0.27659 * 4 3 2 35 35 H 1.08005 * 120.04307 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46895 * 210.04687 * 11 10 9 37 37 H 1.09001 * 109.46852 * 330.03755 * 11 10 9 38 38 H 0.96997 * 120.00175 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47339 * 205.00735 * 21 12 11 40 40 H 1.09004 * 109.46935 * 325.00941 * 21 12 11 41 41 H 1.08003 * 119.99752 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.99988 * 180.22646 * 24 23 22 43 43 H 1.08000 * 119.99809 * 179.71725 * 25 24 23 44 44 H 1.07998 * 120.00271 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99906 * 0.02562 * 27 22 21 46 46 H 1.08003 * 120.03947 * 179.97438 * 29 6 5 47 47 H 1.08000 * 119.95736 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 3.4328 1.2808 -0.0005 5 6 4.0622 2.5069 0.0000 6 6 3.3036 3.6791 0.0005 7 6 3.9744 4.9957 0.0017 8 7 5.2695 5.2098 0.0080 9 7 5.4900 6.4774 0.0033 10 6 4.3544 7.1174 0.0033 11 6 4.1765 8.6138 0.0049 12 7 4.1189 9.1003 -1.3757 13 6 2.9142 9.1877 -2.0211 14 1 2.1558 8.4374 -1.8529 15 6 2.6679 10.2407 -2.8914 16 7 3.3887 11.3394 -2.8158 17 14 1.3133 10.0983 -4.1698 18 1 0.0378 10.5993 -3.5975 19 1 1.6717 10.9066 -5.3628 20 1 1.1535 8.6759 -4.5653 21 6 5.3498 9.4933 -2.0660 22 6 5.9950 8.2752 -2.6750 23 6 7.0102 7.6213 -2.0020 24 6 7.5987 6.5011 -2.5585 25 6 7.1792 6.0409 -3.7927 26 6 6.1677 6.6979 -4.4681 27 6 5.5756 7.8150 -3.9091 28 8 3.3705 6.2010 0.0023 29 6 1.9093 3.6039 0.0000 30 6 1.2874 2.3740 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 4.0189 0.3738 -0.0055 35 1 5.1409 2.5610 0.0000 36 1 3.2500 8.8690 0.5192 37 1 5.0175 9.0791 0.5193 38 1 3.2168 12.0750 -3.4242 39 1 5.1126 10.2102 -2.8520 40 1 6.0363 9.9499 -1.3529 41 1 7.3411 7.9837 -1.0400 42 1 8.3893 5.9881 -2.0310 43 1 7.6422 5.1684 -4.2295 44 1 5.8403 6.3386 -5.4325 45 1 4.7858 8.3287 -4.4371 46 1 1.3191 4.5083 0.0008 47 1 0.2090 2.3150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065565567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:12 Heat of formation + Delta-G solvation = 63.785112 kcal Electronic energy + Delta-G solvation = -32568.943048 eV Core-core repulsion = 28298.344353 eV Total energy + Delta-G solvation = -4270.598695 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.91029 -41.16629 -40.02615 -38.60252 -37.60591 -36.98207 -34.11174 -33.20999 -32.34735 -32.24768 -31.59390 -30.50887 -28.47989 -27.79062 -27.42529 -24.91987 -24.64510 -23.65379 -23.26369 -22.59071 -22.45758 -21.80228 -19.35132 -18.91945 -18.40204 -18.22465 -17.43004 -17.29850 -16.97926 -16.86246 -16.70522 -16.15884 -15.88239 -15.66716 -15.49332 -15.36469 -15.09046 -14.76930 -14.49811 -14.15150 -13.95571 -13.88064 -13.71137 -13.50737 -13.37290 -13.19814 -12.93719 -12.86467 -12.81625 -12.77952 -12.44231 -12.39007 -12.25734 -12.09325 -11.95495 -11.81129 -11.73452 -11.61721 -10.81980 -10.61436 -10.19282 -9.60755 -9.44803 -9.09034 -8.83059 -7.99770 -5.61195 -0.46054 0.21623 0.59121 0.68519 0.79756 1.36714 1.43874 1.44463 1.51890 1.59284 2.24576 2.42289 2.64618 2.91744 3.03576 3.19163 3.50539 3.68451 3.72521 3.79176 4.01729 4.12905 4.13797 4.21533 4.30910 4.34301 4.40640 4.42223 4.44320 4.47404 4.54202 4.59653 4.68318 4.68992 4.76296 4.83792 4.88749 4.90133 4.95984 5.07135 5.17983 5.30549 5.32158 5.34234 5.50872 5.54064 5.60357 5.72618 5.78054 6.00818 6.28386 6.28456 6.37738 6.98616 7.42658 7.60153 8.13123 9.00496 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003193 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.089087 B = 8766.419980 C =10051.491467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.149 3.851 4 C -0.152 4.152 5 C -0.031 4.031 6 C -0.079 4.079 7 C 0.186 3.814 8 N -0.297 5.297 9 N -0.293 5.293 10 C 0.164 3.836 11 C 0.226 3.774 12 N -0.564 5.564 13 C -0.280 4.280 14 H 0.050 0.950 15 C -0.011 4.011 16 N -0.901 5.901 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.281 1.281 21 C 0.181 3.819 22 C -0.102 4.102 23 C -0.090 4.090 24 C -0.119 4.119 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.125 4.125 28 O -0.233 6.233 29 C -0.051 4.051 30 C -0.204 4.204 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.258 0.742 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 -19.104 5.125 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.102 3.898 4 C -0.170 4.170 5 C -0.050 4.050 6 C -0.081 4.081 7 C -0.023 4.023 8 N -0.144 5.144 9 N -0.139 5.139 10 C -0.050 4.050 11 C 0.095 3.905 12 N -0.281 5.281 13 C -0.409 4.409 14 H 0.067 0.933 15 C -0.210 4.210 16 N -0.543 5.543 17 Si 0.777 3.223 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.206 1.206 21 C 0.056 3.944 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.144 4.144 28 O -0.112 6.112 29 C -0.071 4.071 30 C -0.222 4.222 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.145 0.855 45 H 0.110 0.890 46 H 0.150 0.850 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.936 -19.248 5.037 19.918 hybrid contribution -2.216 0.788 -0.882 2.512 sum -3.152 -18.461 4.155 19.183 Atomic orbital electron populations 1.23455 0.76026 1.06030 1.02610 1.86070 1.23795 1.26012 1.87648 1.19373 0.92587 0.84746 0.93082 1.20551 0.91724 0.98452 1.06315 1.21024 1.00786 0.89421 0.93798 1.17344 0.93360 0.85364 1.12035 1.25870 0.88624 0.86678 1.01080 1.74499 1.12643 1.09029 1.18268 1.74249 1.23542 0.97816 1.18321 1.30719 0.80721 0.97343 0.96219 1.19707 1.03851 0.78484 0.88471 1.43893 1.03105 1.72617 1.08497 1.19046 0.93106 1.04906 1.23847 0.93266 1.25647 0.99704 0.93818 1.01880 1.70056 1.42592 1.03796 1.37810 0.85592 0.79906 0.77437 0.79412 1.20199 1.21130 1.20610 1.19985 0.85373 0.92184 0.96882 1.20946 0.95538 0.99578 0.94415 1.20997 0.95676 0.95694 0.98498 1.21216 1.00498 0.96313 0.95680 1.21260 0.97859 1.00485 0.95688 1.21248 0.97787 0.96083 1.00628 1.21009 0.99345 0.97670 0.96367 1.84879 1.40461 1.16078 1.69815 1.21149 0.92324 0.99019 0.94591 1.21358 1.01780 0.90638 1.08436 0.91262 0.91595 0.85861 0.82032 0.83599 0.89127 0.87224 0.93216 0.90104 0.93578 0.86482 0.85123 0.84320 0.85457 0.88958 0.85025 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.28 10.49 -91.69 -0.96 -6.25 16 3 C 0.15 2.87 6.69 22.58 0.15 3.02 16 4 C -0.15 -3.01 9.97 22.33 0.22 -2.79 16 5 C -0.03 -0.75 9.69 22.51 0.22 -0.54 16 6 C -0.08 -2.32 5.87 -20.09 -0.12 -2.43 16 7 C 0.19 6.85 7.99 87.30 0.70 7.55 16 8 N -0.30 -11.55 11.91 -166.32 -1.98 -13.53 16 9 N -0.29 -11.82 9.63 -165.32 -1.59 -13.41 16 10 C 0.16 6.68 7.80 88.33 0.69 7.37 16 11 C 0.23 9.09 6.33 85.63 0.54 9.63 16 12 N -0.56 -26.70 2.41 -710.71 -1.71 -28.41 16 13 C -0.28 -14.59 9.48 84.03 0.80 -13.80 16 14 H 0.05 2.66 7.90 -2.91 -0.02 2.64 16 15 C -0.01 -0.57 4.95 84.86 0.42 -0.15 16 16 N -0.90 -48.89 11.39 21.65 0.25 -48.65 16 17 Si 0.95 42.77 29.60 68.60 2.03 44.80 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 C 0.18 8.36 5.40 85.63 0.46 8.82 16 22 C -0.10 -4.41 5.20 -19.87 -0.10 -4.51 16 23 C -0.09 -3.46 7.29 22.27 0.16 -3.29 16 24 C -0.12 -4.11 10.05 22.27 0.22 -3.89 16 25 C -0.13 -4.48 10.05 22.27 0.22 -4.25 16 26 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 27 C -0.12 -5.41 9.73 22.27 0.22 -5.19 16 28 O -0.23 -9.46 10.67 -9.00 -0.10 -9.55 16 29 C -0.05 -1.28 9.72 22.50 0.22 -1.06 16 30 C -0.20 -3.92 9.02 22.33 0.20 -3.72 16 31 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 32 H 0.07 0.50 7.65 -2.38 -0.02 0.48 16 33 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.15 3.45 7.86 -2.91 -0.02 3.43 16 36 H 0.09 3.50 8.04 -2.39 -0.02 3.48 16 37 H 0.11 3.92 7.94 -2.39 -0.02 3.90 16 38 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 39 H 0.08 4.24 5.45 -2.39 -0.01 4.23 16 40 H 0.05 2.00 7.86 -2.39 -0.02 1.98 16 41 H 0.12 4.37 7.92 -2.91 -0.02 4.34 16 42 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 45 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 46 H 0.13 3.33 7.93 -2.91 -0.02 3.31 16 47 H 0.16 2.14 6.28 -2.91 -0.02 2.12 16 Total: -1.00 -65.01 401.72 3.49 -61.52 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 1.00 Total: 26.39 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.56 Total: -12.92 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -5.04 Total: -103.99 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.06 Total: -15.80 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -65.01 3.49 -61.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065565567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.308 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds