Wall clock time and date at job start Tue Mar 31 2020 07:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46676 * 2 1 4 4 C 1.50699 * 109.47017 * 120.00780 * 2 1 3 5 5 H 1.07994 * 119.99864 * 120.00563 * 4 2 1 6 6 C 1.37883 * 119.99713 * 299.99321 * 4 2 1 7 7 N 1.31507 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99649 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47148 * 60.00052 * 8 6 4 10 10 H 1.48497 * 109.46805 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47168 * 299.99898 * 8 6 4 12 12 N 1.46503 * 109.46644 * 240.00300 * 2 1 3 13 13 C 1.46493 * 120.00391 * 299.99494 * 12 2 1 14 14 C 1.34779 * 119.99675 * 119.99989 * 12 2 1 15 15 O 1.21588 * 120.00116 * 4.84005 * 14 12 2 16 16 C 1.47621 * 120.00260 * 184.83750 * 14 12 2 17 17 C 1.39542 * 120.49238 * 141.62272 * 16 14 12 18 18 N 1.31651 * 120.64661 * 179.74567 * 17 16 14 19 19 C 1.32406 * 121.81446 * 0.57328 * 18 17 16 20 20 O 1.35525 * 119.53420 * 179.70426 * 19 18 17 21 21 C 1.42896 * 116.99790 * 359.73174 * 20 19 18 22 22 C 1.53007 * 109.46995 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.46956 * 59.99388 * 22 21 20 24 24 F 1.39895 * 109.46930 * 179.97438 * 22 21 20 25 25 F 1.39899 * 109.46755 * 299.99789 * 22 21 20 26 26 C 1.39238 * 120.93344 * 359.42743 * 19 18 17 27 27 Cl 1.73601 * 120.37946 * 180.25661 * 26 19 18 28 28 C 1.38078 * 119.24454 * 0.27820 * 26 19 18 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46921 * 299.99043 * 1 2 3 31 31 H 1.09002 * 109.47511 * 59.99969 * 1 2 3 32 32 H 0.96997 * 119.99966 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47606 * 264.89155 * 13 12 2 34 34 H 1.08998 * 109.47294 * 24.89543 * 13 12 2 35 35 H 1.09006 * 109.47206 * 144.89121 * 13 12 2 36 36 H 1.07996 * 119.67872 * 0.04816 * 17 16 14 37 37 H 1.08990 * 109.47502 * 59.99524 * 21 20 19 38 38 H 1.09003 * 109.46542 * 299.99095 * 21 20 19 39 39 H 1.07996 * 120.83166 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3225 -1.1199 4.0078 9 1 3.8075 -1.1195 4.0075 10 1 1.8270 -0.4203 5.2203 11 1 1.8279 -2.5201 4.0079 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1596 1.0998 -1.8486 16 6 3.1968 -0.6963 -3.3402 17 6 3.2567 0.0261 -4.5325 18 7 3.6212 -0.5590 -5.6541 19 6 3.9321 -1.8452 -5.7014 20 8 4.2956 -2.4016 -6.8825 21 6 4.3136 -1.5440 -8.0254 22 6 4.7443 -2.3439 -9.2565 23 9 3.8408 -3.3900 -9.4725 24 9 4.7614 -1.5045 -10.3754 25 9 6.0241 -2.8689 -9.0471 26 6 3.8965 -2.6328 -4.5538 27 17 4.3135 -4.3162 -4.6310 28 6 3.5254 -2.0598 -3.3536 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7084 1.1606 3.4845 33 1 2.4604 -2.7357 -1.0519 34 1 0.7347 -2.3240 -0.9082 35 1 1.5348 -2.2632 -2.4970 36 1 3.0062 1.0766 -4.5344 37 1 5.0171 -0.7288 -7.8569 38 1 3.3163 -1.1355 -8.1887 39 1 3.4886 -2.6468 -2.4479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065591453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:17 Heat of formation + Delta-G solvation = -178.452718 kcal Electronic energy + Delta-G solvation = -30382.496458 eV Core-core repulsion = 25323.552196 eV Total energy + Delta-G solvation = -5058.944262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.074 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.55409 -48.10999 -48.00220 -41.28787 -39.54768 -38.10019 -36.85179 -35.58133 -33.52144 -32.40525 -31.69942 -30.01474 -29.16404 -26.59849 -25.32465 -24.70596 -24.45542 -23.18703 -21.47965 -19.66654 -19.14605 -19.09661 -18.52757 -18.32188 -17.17011 -16.95025 -16.70145 -16.21627 -15.83490 -15.29871 -15.02779 -14.93584 -14.83041 -14.70984 -14.46012 -14.18371 -14.17965 -14.16524 -14.02963 -13.89355 -13.51074 -12.88950 -12.68694 -12.51529 -12.30747 -12.23841 -11.92901 -11.68971 -11.54163 -11.38229 -11.14089 -10.89869 -10.82904 -10.41145 -10.32741 -10.25433 -9.96538 -9.32539 -9.23993 -8.81932 -8.51187 -7.80413 -6.15396 -4.24003 0.44963 0.66948 1.63869 1.74580 2.48670 2.89412 3.23353 3.23444 3.29123 3.30364 3.47052 3.51142 3.64919 3.71317 3.88050 4.31603 4.40023 4.50524 4.52949 4.59128 4.68991 5.01674 5.16117 5.24930 5.49460 5.65878 5.75541 5.84352 6.11944 6.40162 6.64687 6.69665 6.92035 7.19746 7.24915 7.37066 7.60905 7.89149 8.06671 8.31410 8.65372 8.83145 9.42679 10.89936 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.002168 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.801127 B =12913.613978 C =13618.468053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.580 5.580 13 C 0.077 3.923 14 C 0.552 3.448 15 O -0.537 6.537 16 C -0.184 4.184 17 C 0.196 3.804 18 N -0.528 5.528 19 C 0.340 3.660 20 O -0.281 6.281 21 C 0.025 3.975 22 C 0.464 3.536 23 F -0.173 7.173 24 F -0.170 7.170 25 F -0.173 7.173 26 C -0.108 4.108 27 Cl -0.036 7.036 28 C -0.009 4.009 29 H 0.031 0.969 30 H 0.096 0.904 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.181 0.819 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -7.603 -21.017 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.310 5.310 13 C -0.067 4.067 14 C 0.337 3.663 15 O -0.416 6.416 16 C -0.190 4.190 17 C 0.039 3.961 18 N -0.251 5.251 19 C 0.161 3.839 20 O -0.188 6.188 21 C -0.053 4.053 22 C 0.409 3.591 23 F -0.155 7.155 24 F -0.152 7.152 25 F -0.155 7.155 26 C -0.138 4.138 27 Cl -0.007 7.007 28 C -0.035 4.035 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.198 0.802 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.444 -6.849 -21.589 23.081 hybrid contribution 0.347 -1.166 1.301 1.781 sum 4.791 -8.015 -20.288 22.334 Atomic orbital electron populations 1.22123 0.97914 0.99562 1.01076 1.19048 0.90988 0.94571 0.79524 0.91584 1.21235 1.32199 1.13146 0.90149 0.92242 1.24881 0.94844 0.94938 0.98992 1.69851 1.36072 1.22492 1.24040 0.86537 0.79289 0.79571 0.81903 1.20192 1.21130 1.20191 1.48228 1.47989 1.11606 1.23225 1.21930 1.01951 0.83110 0.99679 1.17741 0.79882 0.86029 0.82624 1.90793 1.55291 1.18340 1.77166 1.21188 1.06521 0.93947 0.97319 1.22692 0.88629 1.00067 0.84694 1.67490 1.18490 1.08297 1.30856 1.19420 0.91698 0.88307 0.84513 1.86215 1.82437 1.36253 1.13880 1.23689 1.07043 0.92534 0.81995 1.20051 0.75655 0.78604 0.84749 1.93243 1.67192 1.59580 1.95461 1.93233 1.96332 1.71303 1.54319 1.93244 1.40018 1.87406 1.94795 1.20661 1.11752 0.88443 0.92902 1.98396 1.91895 1.11865 1.98566 1.22101 0.90296 0.93984 0.97070 0.94963 0.88557 0.96838 0.92504 0.92835 0.89947 0.92727 0.80208 0.86466 0.86488 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.96 37.16 0.33 -2.97 16 2 C 0.26 6.16 2.63 -69.08 -0.18 5.98 16 3 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -13.53 8.37 -34.44 -0.29 -13.82 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.58 -11.32 2.75 -176.47 -0.49 -11.81 16 13 C 0.08 1.16 8.08 59.84 0.48 1.64 16 14 C 0.55 10.44 7.37 -12.43 -0.09 10.35 16 15 O -0.54 -12.19 16.25 5.29 0.09 -12.10 16 16 C -0.18 -2.63 5.27 -104.83 -0.55 -3.18 16 17 C 0.20 2.46 10.79 -17.14 -0.18 2.28 16 18 N -0.53 -6.13 9.18 -12.94 -0.12 -6.24 16 19 C 0.34 3.95 7.49 -16.93 -0.13 3.82 16 20 O -0.28 -2.95 9.46 -18.27 -0.17 -3.12 16 21 C 0.02 0.19 5.26 37.16 0.20 0.39 16 22 C 0.46 3.78 3.32 37.16 0.12 3.90 16 23 F -0.17 -1.63 17.26 2.25 0.04 -1.59 16 24 F -0.17 -1.33 17.32 2.25 0.04 -1.29 16 25 F -0.17 -1.64 17.26 2.25 0.04 -1.60 16 26 C -0.11 -1.27 6.35 -39.27 -0.25 -1.52 16 27 Cl -0.04 -0.39 28.53 -51.86 -1.48 -1.87 16 28 C -0.01 -0.11 7.48 -38.88 -0.29 -0.40 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 30 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.05 0.74 6.86 -51.93 -0.36 0.38 16 34 H 0.08 1.27 6.44 -51.93 -0.33 0.94 16 35 H 0.05 0.67 5.83 -51.93 -0.30 0.37 16 36 H 0.18 2.05 8.05 -52.49 -0.42 1.63 16 37 H 0.12 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.12 0.75 8.10 -51.93 -0.42 0.32 16 39 H 0.17 1.96 5.30 -52.49 -0.28 1.68 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -29.42 359.24 -5.47 -34.90 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.51 Total: -0.61 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.92 Total: 8.09 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.02 Total: -41.51 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.09 Total: -15.22 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.12 Total: -4.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.42 -5.47 -34.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065591453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.557 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds