Wall clock time and date at job start Tue Mar 31 2020 07:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46676 * 2 1 4 4 C 1.50699 * 109.47017 * 120.00780 * 2 1 3 5 5 H 1.07994 * 119.99864 * 120.00563 * 4 2 1 6 6 C 1.37883 * 119.99713 * 299.99321 * 4 2 1 7 7 N 1.31507 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99649 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47148 * 60.00052 * 8 6 4 10 10 H 1.48497 * 109.46805 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47168 * 299.99898 * 8 6 4 12 12 N 1.46503 * 109.46644 * 240.00300 * 2 1 3 13 13 C 1.46493 * 120.00391 * 299.99494 * 12 2 1 14 14 C 1.34779 * 119.99675 * 119.99989 * 12 2 1 15 15 O 1.21588 * 120.00116 * 4.84005 * 14 12 2 16 16 C 1.47621 * 120.00260 * 184.83750 * 14 12 2 17 17 C 1.39542 * 120.49238 * 141.62272 * 16 14 12 18 18 N 1.31651 * 120.64661 * 179.74567 * 17 16 14 19 19 C 1.32406 * 121.81446 * 0.57328 * 18 17 16 20 20 O 1.35525 * 119.53420 * 179.70426 * 19 18 17 21 21 C 1.42896 * 116.99790 * 359.73174 * 20 19 18 22 22 C 1.53007 * 109.46995 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.46956 * 59.99388 * 22 21 20 24 24 F 1.39895 * 109.46930 * 179.97438 * 22 21 20 25 25 F 1.39899 * 109.46755 * 299.99789 * 22 21 20 26 26 C 1.39238 * 120.93344 * 359.42743 * 19 18 17 27 27 Cl 1.73601 * 120.37946 * 180.25661 * 26 19 18 28 28 C 1.38078 * 119.24454 * 0.27820 * 26 19 18 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46921 * 299.99043 * 1 2 3 31 31 H 1.09002 * 109.47511 * 59.99969 * 1 2 3 32 32 H 0.96997 * 119.99966 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47606 * 264.89155 * 13 12 2 34 34 H 1.08998 * 109.47294 * 24.89543 * 13 12 2 35 35 H 1.09006 * 109.47206 * 144.89121 * 13 12 2 36 36 H 1.07996 * 119.67872 * 0.04816 * 17 16 14 37 37 H 1.08990 * 109.47502 * 59.99524 * 21 20 19 38 38 H 1.09003 * 109.46542 * 299.99095 * 21 20 19 39 39 H 1.07996 * 120.83166 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3225 -1.1199 4.0078 9 1 3.8075 -1.1195 4.0075 10 1 1.8270 -0.4203 5.2203 11 1 1.8279 -2.5201 4.0079 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1596 1.0998 -1.8486 16 6 3.1968 -0.6963 -3.3402 17 6 3.2567 0.0261 -4.5325 18 7 3.6212 -0.5590 -5.6541 19 6 3.9321 -1.8452 -5.7014 20 8 4.2956 -2.4016 -6.8825 21 6 4.3136 -1.5440 -8.0254 22 6 4.7443 -2.3439 -9.2565 23 9 3.8408 -3.3900 -9.4725 24 9 4.7614 -1.5045 -10.3754 25 9 6.0241 -2.8689 -9.0471 26 6 3.8965 -2.6328 -4.5538 27 17 4.3135 -4.3162 -4.6310 28 6 3.5254 -2.0598 -3.3536 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7084 1.1606 3.4845 33 1 2.4604 -2.7357 -1.0519 34 1 0.7347 -2.3240 -0.9082 35 1 1.5348 -2.2632 -2.4970 36 1 3.0062 1.0766 -4.5344 37 1 5.0171 -0.7288 -7.8569 38 1 3.3163 -1.1355 -8.1887 39 1 3.4886 -2.6468 -2.4479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065591453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:16 Heat of formation + Delta-G solvation = -196.658091 kcal Electronic energy + Delta-G solvation = -30383.285902 eV Core-core repulsion = 25323.552196 eV Total energy + Delta-G solvation = -5059.733707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.074 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.22299 -48.76484 -48.70161 -42.28355 -40.81430 -39.17083 -37.76065 -37.21829 -35.08986 -33.73663 -32.63315 -31.24660 -30.46299 -27.91995 -27.27312 -25.65750 -25.53478 -23.96780 -23.02141 -20.66813 -20.43077 -19.76984 -19.33647 -19.08081 -18.62533 -18.16687 -17.70870 -17.53962 -17.28601 -16.54804 -16.26812 -16.15887 -15.64043 -15.60095 -15.38534 -15.13695 -15.03690 -14.91338 -14.84921 -14.83805 -14.68814 -14.49497 -14.09127 -13.86714 -13.45955 -13.20640 -13.07513 -12.94536 -12.87528 -12.68977 -12.64030 -12.55766 -12.27545 -12.16148 -12.12288 -11.44561 -11.17041 -10.97492 -10.70896 -10.48756 -9.81016 -9.39271 -8.12914 -6.28803 -0.56581 -0.29694 0.82130 0.90322 1.44458 1.46166 1.53102 1.65448 1.78073 2.15334 2.37232 2.48510 2.59337 2.80486 2.87187 3.13737 3.15839 3.32939 3.52223 3.66162 3.92705 3.96067 4.03552 4.22842 4.32890 4.59734 4.69633 4.73867 4.84117 4.92017 4.99910 5.06362 5.46621 5.52068 5.59450 5.67113 6.02148 6.16648 6.25562 6.70486 6.77762 7.21055 7.43763 8.91168 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.002168 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.801127 B =12913.613978 C =13618.468053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.262 3.738 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.588 5.588 13 C 0.073 3.927 14 C 0.551 3.449 15 O -0.587 6.587 16 C -0.198 4.198 17 C 0.205 3.795 18 N -0.521 5.521 19 C 0.350 3.650 20 O -0.286 6.286 21 C 0.021 3.979 22 C 0.469 3.531 23 F -0.181 7.181 24 F -0.167 7.167 25 F -0.182 7.182 26 C -0.111 4.111 27 Cl -0.026 7.026 28 C 0.002 3.998 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.188 0.812 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -9.536 -22.343 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.317 5.317 13 C -0.069 4.069 14 C 0.339 3.661 15 O -0.469 6.469 16 C -0.204 4.204 17 C 0.049 3.951 18 N -0.245 5.245 19 C 0.170 3.830 20 O -0.193 6.193 21 C -0.055 4.055 22 C 0.414 3.586 23 F -0.162 7.162 24 F -0.148 7.148 25 F -0.163 7.163 26 C -0.140 4.140 27 Cl 0.003 6.997 28 C -0.023 4.023 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.205 0.795 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.816 -8.835 -22.955 25.063 hybrid contribution 0.282 -0.590 1.556 1.688 sum 5.098 -9.426 -21.399 23.932 Atomic orbital electron populations 1.21909 0.96834 1.00340 1.00252 1.18624 0.91746 0.92409 0.81134 0.96628 1.21536 1.31995 1.13156 0.90985 0.91886 1.25676 0.95087 0.95606 1.01879 1.69995 1.37180 1.23801 1.24482 0.85567 0.78397 0.79046 0.78365 1.20358 1.21173 1.18725 1.48157 1.48092 1.13274 1.22172 1.22182 1.02287 0.80572 1.01843 1.18294 0.78789 0.85465 0.83590 1.90758 1.57071 1.20667 1.78393 1.20691 1.09364 0.94808 0.95522 1.22779 0.87688 1.00325 0.84354 1.67575 1.18591 1.08318 1.30004 1.19546 0.90396 0.88169 0.84924 1.86202 1.81922 1.36996 1.14144 1.23936 1.08590 0.92310 0.80689 1.20064 0.75134 0.78368 0.84997 1.93231 1.67409 1.60045 1.95536 1.93243 1.96284 1.71119 1.54192 1.93230 1.40645 1.87578 1.94856 1.20633 1.11734 0.89002 0.92677 1.98405 1.91789 1.10993 1.98525 1.22071 0.89511 0.93060 0.97703 0.93238 0.91253 0.95734 0.92647 0.91316 0.90237 0.89618 0.79502 0.84965 0.84743 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.96 71.98 0.64 -5.45 16 2 C 0.26 12.84 2.63 44.25 0.12 12.96 16 3 H 0.02 0.92 6.91 -2.39 -0.02 0.91 16 4 C -0.54 -27.78 8.37 25.60 0.21 -27.56 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -50.99 11.32 21.45 0.24 -50.74 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.59 -22.88 2.75 -830.47 -2.29 -25.17 16 13 C 0.07 2.07 8.08 127.77 1.03 3.10 16 14 C 0.55 20.99 7.37 86.72 0.64 21.63 16 15 O -0.59 -27.67 16.25 -3.99 -0.06 -27.73 16 16 C -0.20 -5.43 5.27 -20.00 -0.11 -5.53 16 17 C 0.21 4.84 10.79 85.03 0.92 5.76 16 18 N -0.52 -10.81 9.18 -307.73 -2.82 -13.64 16 19 C 0.35 7.17 7.49 84.85 0.64 7.80 16 20 O -0.29 -5.23 9.46 -88.28 -0.83 -6.06 16 21 C 0.02 0.27 5.26 71.98 0.38 0.65 16 22 C 0.47 6.66 3.32 71.98 0.24 6.90 16 23 F -0.18 -3.05 17.26 44.97 0.78 -2.27 16 24 F -0.17 -2.27 17.32 44.97 0.78 -1.49 16 25 F -0.18 -3.12 17.26 44.97 0.78 -2.34 16 26 C -0.11 -2.32 6.35 22.47 0.14 -2.18 16 27 Cl -0.03 -0.50 28.53 -2.72 -0.08 -0.58 16 28 C 0.00 0.05 7.48 22.72 0.17 0.22 16 29 H 0.05 2.01 6.66 -2.39 -0.02 1.99 16 30 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 34 H 0.08 2.30 6.44 -2.39 -0.02 2.29 16 35 H 0.09 1.89 5.83 -2.38 -0.01 1.87 16 36 H 0.19 4.10 8.05 -2.91 -0.02 4.07 16 37 H 0.13 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.13 1.30 8.10 -2.39 -0.02 1.28 16 39 H 0.18 3.66 5.30 -2.91 -0.02 3.65 16 Total: -1.00 -64.81 359.24 5.13 -59.68 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.14 Total: 7.05 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.47 Total: 19.67 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -4.87 Total: -89.55 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.90 Total: -33.80 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 2.33 Total: -6.10 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -64.81 5.13 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065591453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.977 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds