Wall clock time and date at job start Tue Mar 31 2020 07:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46651 * 2 1 4 4 C 1.50694 * 109.47479 * 240.00124 * 2 1 3 5 5 H 1.07999 * 119.99825 * 245.31703 * 4 2 1 6 6 C 1.37878 * 120.00173 * 65.31301 * 4 2 1 7 7 N 1.31510 * 119.99962 * 7.75025 * 6 4 2 8 8 Si 1.86803 * 119.99825 * 187.74373 * 6 4 2 9 9 H 1.48503 * 109.46883 * 94.99486 * 8 6 4 10 10 H 1.48495 * 109.47056 * 214.98796 * 8 6 4 11 11 H 1.48501 * 109.47482 * 334.99164 * 8 6 4 12 12 N 1.46496 * 109.47108 * 119.99377 * 2 1 3 13 13 C 1.46504 * 119.99765 * 60.00730 * 12 2 1 14 14 C 1.34781 * 120.00579 * 240.00268 * 12 2 1 15 15 O 1.21585 * 119.99401 * 3.64418 * 14 12 2 16 16 C 1.47612 * 120.00296 * 183.64948 * 14 12 2 17 17 C 1.39552 * 120.49313 * 329.03721 * 16 14 12 18 18 N 1.31646 * 120.64904 * 179.72936 * 17 16 14 19 19 C 1.32401 * 121.81589 * 0.52009 * 18 17 16 20 20 O 1.35523 * 119.53543 * 179.75476 * 19 18 17 21 21 C 1.42900 * 116.99756 * 359.72855 * 20 19 18 22 22 C 1.52997 * 109.47169 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47409 * 59.99670 * 22 21 20 24 24 F 1.39904 * 109.47380 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.47186 * 299.99672 * 22 21 20 26 26 C 1.39234 * 120.93686 * 359.47930 * 19 18 17 27 27 Cl 1.73603 * 120.38345 * 180.23172 * 26 19 18 28 28 C 1.38088 * 119.24016 * 0.25099 * 26 19 18 29 29 H 1.08991 * 109.47206 * 303.31730 * 1 2 3 30 30 H 1.08994 * 109.47078 * 63.32155 * 1 2 3 31 31 H 1.09007 * 109.46705 * 183.31675 * 1 2 3 32 32 H 0.96996 * 119.99806 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47070 * 274.26287 * 13 12 2 34 34 H 1.09000 * 109.47106 * 34.26261 * 13 12 2 35 35 H 1.09008 * 109.47047 * 154.26528 * 13 12 2 36 36 H 1.07998 * 119.67378 * 359.97438 * 17 16 14 37 37 H 1.08994 * 109.47288 * 59.99670 * 21 20 19 38 38 H 1.09007 * 109.46936 * 299.99993 * 21 20 19 39 39 H 1.07999 * 120.82825 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5807 -1.6358 -1.1336 6 6 1.7921 -0.1789 -2.4797 7 7 1.2610 1.0188 -2.5938 8 14 2.2210 -1.1601 -4.0104 9 1 1.0188 -1.8939 -4.4809 10 1 2.6857 -0.2365 -5.0763 11 1 3.2994 -2.1297 -3.6908 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0323 1.1462 1.9256 16 6 3.3514 -0.7526 3.2466 17 6 2.6579 -1.8188 3.8208 18 7 3.1555 -2.4639 4.8549 19 6 4.3164 -2.1270 5.3951 20 8 4.7828 -2.8200 6.4623 21 6 3.9683 -3.8890 6.9479 22 6 4.6533 -4.5481 8.1467 23 9 4.8325 -3.6008 9.1604 24 9 3.8563 -5.5952 8.6217 25 9 5.8981 -5.0516 7.7538 26 6 5.0676 -1.0745 4.8788 27 17 6.5908 -0.6489 5.5947 28 6 4.5869 -0.3728 3.7909 29 1 -0.3633 0.5644 0.8587 30 1 -0.3633 0.4614 -0.9182 31 1 -0.3633 -1.0260 0.0595 32 1 1.0923 1.3928 -3.4727 33 1 0.6998 -2.1458 1.9329 34 1 1.6038 -2.6151 0.4731 35 1 2.4265 -2.5619 2.0508 36 1 1.7055 -2.1201 3.4103 37 1 3.8284 -4.6269 6.1580 38 1 2.9986 -3.4967 7.2544 39 1 5.1486 0.4477 3.3695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065591454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:20 Heat of formation + Delta-G solvation = -170.832190 kcal Electronic energy + Delta-G solvation = -30408.949750 eV Core-core repulsion = 25350.335939 eV Total energy + Delta-G solvation = -5058.613812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.074 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.54918 -48.10461 -47.99774 -41.32191 -39.57699 -38.08297 -36.83542 -35.63217 -33.19922 -32.69890 -31.72518 -30.34602 -28.93591 -26.77319 -25.31485 -24.81246 -24.23903 -23.24639 -21.47879 -19.64265 -19.17086 -19.09208 -18.58367 -18.29869 -17.41872 -16.91345 -16.71750 -16.34899 -15.59883 -15.34804 -15.02006 -14.91553 -14.78733 -14.45830 -14.42071 -14.28508 -14.17164 -14.16280 -13.95449 -13.93034 -13.47221 -13.02836 -12.67614 -12.56607 -12.33958 -12.24660 -12.00774 -11.76499 -11.47068 -11.27054 -11.08531 -11.01734 -10.83171 -10.44348 -10.30600 -10.23304 -10.01155 -9.36871 -9.25027 -8.76706 -8.51024 -7.82699 -6.18252 -4.24658 0.42191 0.69907 1.64484 1.75891 2.49240 2.89279 3.20645 3.23875 3.28647 3.30069 3.48573 3.51624 3.65025 3.74169 3.87538 4.30988 4.38849 4.50760 4.54804 4.60344 4.74255 4.89480 5.14504 5.25487 5.44696 5.66435 5.70693 5.81703 6.16215 6.39418 6.57129 6.64356 6.86331 7.16889 7.19225 7.38557 7.56655 7.80970 8.02261 8.29740 8.65907 8.83365 9.41205 10.89078 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002239 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.861018 B =12503.766117 C =13111.843745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.257 3.743 3 H 0.072 0.928 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.062 3.938 14 C 0.552 3.448 15 O -0.538 6.538 16 C -0.186 4.186 17 C 0.161 3.839 18 N -0.529 5.529 19 C 0.341 3.659 20 O -0.281 6.281 21 C 0.025 3.975 22 C 0.464 3.536 23 F -0.173 7.173 24 F -0.170 7.170 25 F -0.173 7.173 26 C -0.109 4.109 27 Cl -0.036 7.036 28 C 0.020 3.980 29 H 0.017 0.983 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.193 0.807 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -10.951 19.382 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.157 3.843 3 H 0.090 0.910 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.082 4.082 14 C 0.338 3.662 15 O -0.416 6.416 16 C -0.192 4.192 17 C 0.006 3.994 18 N -0.253 5.253 19 C 0.161 3.839 20 O -0.188 6.188 21 C -0.053 4.053 22 C 0.409 3.591 23 F -0.155 7.155 24 F -0.152 7.152 25 F -0.155 7.155 26 C -0.138 4.138 27 Cl -0.007 7.007 28 C -0.006 4.006 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.209 0.791 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.032 -10.836 19.733 22.871 hybrid contribution 0.678 -0.183 -1.013 1.233 sum 4.710 -11.019 18.720 22.226 Atomic orbital electron populations 1.22023 0.98193 0.99019 1.00804 1.19048 0.90715 0.95073 0.79440 0.90985 1.21258 1.36748 1.08877 0.90272 0.92067 1.24892 0.94978 0.94644 0.99005 1.69952 1.43286 1.14565 1.24215 0.86515 0.78617 0.79918 0.82582 1.20543 1.21092 1.19852 1.48185 1.48108 1.11409 1.23323 1.22249 0.98673 0.83819 1.03452 1.17723 0.79915 0.86688 0.81911 1.90787 1.60350 1.14978 1.75518 1.21168 0.97128 1.00029 1.00910 1.23662 0.99624 0.88437 0.87713 1.67506 1.11568 1.31979 1.14197 1.19425 0.89161 0.88584 0.86686 1.86217 1.45262 1.44181 1.43117 1.23689 0.95055 0.91503 0.95011 1.20056 0.77450 0.77165 0.84405 1.93243 1.95354 1.64152 1.62735 1.93236 1.73796 1.58850 1.89306 1.93245 1.43705 1.87906 1.90611 1.20637 0.92769 0.99971 1.00444 1.98393 1.27308 1.92454 1.82563 1.21521 0.93376 0.95919 0.89800 0.96368 0.90185 0.94833 0.92544 0.92702 0.89525 0.91650 0.79094 0.86434 0.86486 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.11 37.16 0.34 -2.75 16 2 C 0.26 6.09 2.50 -69.09 -0.17 5.91 16 3 H 0.07 2.02 6.87 -51.93 -0.36 1.66 16 4 C -0.53 -13.54 8.05 -34.44 -0.28 -13.81 16 5 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 6 C 0.07 1.78 5.20 -17.82 -0.09 1.69 16 7 N -0.88 -24.23 12.06 55.43 0.67 -23.56 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.58 -11.17 2.75 -176.46 -0.49 -11.65 16 13 C 0.06 0.88 7.75 59.85 0.46 1.34 16 14 C 0.55 10.53 7.46 -12.43 -0.09 10.44 16 15 O -0.54 -12.40 16.12 5.29 0.09 -12.31 16 16 C -0.19 -2.71 5.49 -104.83 -0.58 -3.29 16 17 C 0.16 1.91 8.63 -17.14 -0.15 1.77 16 18 N -0.53 -5.94 9.18 -12.94 -0.12 -6.06 16 19 C 0.34 3.99 7.49 -16.94 -0.13 3.86 16 20 O -0.28 -2.96 9.46 -18.26 -0.17 -3.14 16 21 C 0.02 0.19 5.26 37.16 0.20 0.38 16 22 C 0.46 3.77 3.32 37.16 0.12 3.89 16 23 F -0.17 -1.63 17.26 2.25 0.04 -1.59 16 24 F -0.17 -1.32 17.32 2.25 0.04 -1.28 16 25 F -0.17 -1.64 17.26 2.25 0.04 -1.60 16 26 C -0.11 -1.34 6.35 -39.27 -0.25 -1.59 16 27 Cl -0.04 -0.41 28.53 -51.86 -1.48 -1.89 16 28 C 0.02 0.27 9.52 -38.88 -0.37 -0.10 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 1.93 6.75 -51.93 -0.35 1.58 16 31 H 0.03 0.65 7.56 -51.92 -0.39 0.26 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 0.64 7.42 -51.93 -0.39 0.26 16 34 H 0.09 1.33 6.87 -51.93 -0.36 0.97 16 35 H 0.07 0.78 4.75 -51.92 -0.25 0.53 16 36 H 0.19 1.91 4.73 -52.49 -0.25 1.66 16 37 H 0.12 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.12 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.17 2.18 8.00 -52.49 -0.42 1.76 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -29.87 359.61 -5.50 -35.37 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.53 Total: -0.55 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.98 Total: 7.74 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.06 Total: -41.28 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.09 Total: -15.45 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.12 Total: -4.48 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.87 -5.50 -35.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065591454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.458 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds