Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47583 * 2 1 4 4 O 1.42903 * 109.47126 * 119.99625 * 2 1 3 5 5 C 1.35707 * 117.00353 * 277.14250 * 4 2 1 6 6 C 1.38647 * 120.14651 * 358.31145 * 5 4 2 7 7 C 1.38102 * 120.09450 * 179.97438 * 6 5 4 8 8 C 1.38517 * 120.38827 * 359.97438 * 7 6 5 9 9 C 1.37821 * 120.29632 * 0.02562 * 8 7 6 10 10 C 1.39709 * 119.90499 * 0.27471 * 9 8 7 11 11 C 1.43198 * 120.19913 * 179.70673 * 10 9 8 12 12 N 4.93125 * 109.42852 * 130.68642 * 2 1 3 13 13 C 1.50705 * 109.47588 * 239.99638 * 2 1 3 14 14 O 1.21272 * 120.00124 * 255.13683 * 13 2 1 15 15 N 1.34774 * 119.99758 * 75.13785 * 13 2 1 16 16 C 1.46506 * 119.99950 * 4.89122 * 15 13 2 17 17 C 1.50697 * 109.46924 * 92.82019 * 16 15 13 18 18 H 1.07995 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00129 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47229 * 90.00248 * 21 19 17 23 23 H 1.48503 * 109.47044 * 209.99939 * 21 19 17 24 24 H 1.48489 * 109.47230 * 329.99969 * 21 19 17 25 25 C 1.46499 * 120.00077 * 184.89488 * 15 13 2 26 26 C 1.50697 * 109.47207 * 89.99718 * 25 15 13 27 27 C 1.38681 * 120.42075 * 269.72242 * 26 25 15 28 28 C 1.38621 * 118.42096 * 179.78051 * 27 26 25 29 29 C 1.38229 * 119.16421 * 0.51841 * 28 27 26 30 30 N 1.31857 * 120.76176 * 359.72030 * 29 28 27 31 31 C 1.31894 * 121.72339 * 0.02562 * 30 29 28 32 32 H 1.09007 * 109.46790 * 55.76004 * 1 2 3 33 33 H 1.09002 * 109.46924 * 175.75311 * 1 2 3 34 34 H 1.08994 * 109.47328 * 295.75440 * 1 2 3 35 35 H 1.08011 * 119.95135 * 359.96690 * 6 5 4 36 36 H 1.08001 * 119.80514 * 179.97438 * 7 6 5 37 37 H 1.07995 * 119.85029 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.05051 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46823 * 212.81796 * 16 15 13 40 40 H 1.09000 * 109.46883 * 332.81688 * 16 15 13 41 41 H 0.96998 * 119.99704 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47259 * 209.99461 * 25 15 13 43 43 H 1.08998 * 109.46812 * 329.99848 * 25 15 13 44 44 H 1.07998 * 120.78137 * 0.02562 * 27 26 25 45 45 H 1.08008 * 120.41981 * 180.21947 * 28 27 26 46 46 H 1.07998 * 119.62242 * 179.74945 * 29 28 27 47 47 H 1.07999 * 119.61165 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0699 0.0500 2.3132 6 6 1.7159 1.3905 2.3110 7 6 1.7806 2.1257 3.4783 8 6 2.1980 1.5319 4.6581 9 6 2.5536 0.2006 4.6786 10 6 2.4988 -0.5532 3.5035 11 6 2.8729 -1.9354 3.5163 12 7 3.1702 -3.0317 3.5264 13 6 2.0324 -0.7105 -1.2304 14 8 2.4886 -1.8305 -1.1401 15 7 1.9748 -0.1011 -2.4311 16 6 1.5242 1.2897 -2.5259 17 6 2.7167 2.2092 -2.4662 18 1 3.7108 1.7987 -2.3681 19 6 2.5387 3.5745 -2.5381 20 7 1.3283 4.0744 -2.6591 21 14 4.0169 4.7143 -2.4649 22 1 4.5227 4.9579 -3.8397 23 1 3.6168 6.0049 -1.8488 24 1 5.0862 4.0863 -1.6481 25 6 2.3627 -0.8294 -3.6416 26 6 1.1561 -1.5242 -4.2182 27 6 0.8390 -2.8177 -3.8314 28 6 -0.2828 -3.4154 -4.3845 29 6 -1.0365 -2.7114 -5.3048 30 7 -0.7022 -1.4844 -5.6530 31 6 0.3552 -0.8827 -5.1436 32 1 -0.3633 0.5783 -0.8496 33 1 -0.3633 -1.0249 -0.0761 34 1 -0.3634 0.4465 0.9255 35 1 1.3892 1.8605 1.3950 36 1 1.5041 3.1697 3.4712 37 1 2.2449 2.1149 5.5660 38 1 2.8788 -0.2582 5.6006 39 1 0.9981 1.4377 -3.4689 40 1 0.8526 1.5113 -1.6964 41 1 1.2031 5.0350 -2.7093 42 1 2.7633 -0.1290 -4.3744 43 1 3.1233 -1.5693 -3.3924 44 1 1.4493 -3.3451 -3.1133 45 1 -0.5616 -4.4204 -4.1036 46 1 -1.9097 -3.1715 -5.7434 47 1 0.5978 0.1230 -5.4535 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065608214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = 25.306798 kcal Electronic energy + Delta-G solvation = -32610.221980 eV Core-core repulsion = 28337.954740 eV Total energy + Delta-G solvation = -4272.267240 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.70571 -40.06531 -39.08446 -37.43616 -36.19840 -35.40766 -33.31118 -32.49558 -31.98419 -31.39968 -30.85905 -29.88964 -27.69352 -26.32394 -24.46479 -23.94110 -23.49618 -22.95620 -22.46659 -21.42848 -19.42143 -18.86349 -17.53292 -17.04247 -16.88956 -16.45621 -16.11466 -15.85260 -15.57313 -15.40819 -15.09887 -15.03687 -14.63786 -14.33811 -14.31854 -13.79592 -13.50577 -13.40907 -13.07555 -13.04815 -12.90539 -12.78237 -12.61532 -12.49417 -12.28773 -12.20642 -11.88792 -11.85295 -11.66404 -11.63181 -11.25718 -11.17762 -11.07878 -10.83967 -10.73217 -10.33168 -9.95910 -9.66581 -9.31123 -9.29193 -9.10703 -8.83324 -8.70198 -8.29580 -8.00364 -6.35415 -4.44514 0.75471 1.22812 1.27751 1.45785 2.75618 2.84469 3.02724 3.08460 3.12699 3.21283 3.25170 3.78945 3.85835 3.97897 4.12103 4.21083 4.60754 4.75283 4.76029 4.91714 4.96899 4.98291 5.03666 5.06768 5.15276 5.19787 5.20097 5.23880 5.26009 5.42902 5.55848 5.68920 5.75284 5.79052 5.82136 5.98383 6.08442 6.10537 6.12419 6.17892 6.29446 6.34063 6.46073 6.52945 6.55197 6.87093 6.92277 7.18949 7.33330 7.58783 7.67543 7.83665 8.01988 8.12867 8.56859 8.72689 9.25093 10.70770 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.006915 B = 0.003981 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4048.449339 B = 7031.525639 C =10017.744202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 H 0.120 0.880 4 O -0.283 6.283 5 C 0.186 3.814 6 C -0.209 4.209 7 C -0.045 4.045 8 C -0.166 4.166 9 C -0.036 4.036 10 C -0.071 4.071 11 C 0.266 3.734 12 N -0.423 5.423 13 C 0.527 3.473 14 O -0.547 6.547 15 N -0.585 5.585 16 C 0.228 3.772 17 C -0.547 4.547 18 H 0.063 0.937 19 C 0.070 3.930 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.162 3.838 26 C -0.147 4.147 27 C -0.057 4.057 28 C -0.180 4.180 29 C 0.091 3.909 30 N -0.488 5.488 31 C 0.116 3.884 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.267 0.733 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.150 0.850 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -3.559 6.704 8.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 H 0.137 0.863 4 O -0.193 6.193 5 C 0.136 3.864 6 C -0.228 4.228 7 C -0.064 4.064 8 C -0.184 4.184 9 C -0.056 4.056 10 C -0.075 4.075 11 C -0.049 4.049 12 N -0.099 5.099 13 C 0.313 3.687 14 O -0.425 6.425 15 N -0.316 5.316 16 C 0.109 3.891 17 C -0.586 4.586 18 H 0.082 0.918 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C 0.038 3.962 26 C -0.150 4.150 27 C -0.084 4.084 28 C -0.200 4.200 29 C -0.066 4.066 30 N -0.197 5.197 31 C -0.041 4.041 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.168 0.832 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.487 -5.412 6.069 8.848 hybrid contribution 1.012 1.055 0.462 1.533 sum -2.475 -4.357 6.531 8.232 Atomic orbital electron populations 1.22331 0.92609 1.03732 1.04386 1.22421 0.95743 0.98474 0.82818 0.86301 1.86163 1.79307 1.38518 1.15351 1.19049 0.91690 0.90186 0.85452 1.21478 1.07451 0.92810 1.01060 1.21228 0.93670 0.99948 0.91549 1.20958 1.03987 0.94621 0.98832 1.20958 0.95411 0.93667 0.95565 1.15295 1.12237 0.86960 0.92994 1.25326 0.93482 0.92427 0.93637 1.81175 1.09575 1.11761 1.07407 1.19761 0.78786 0.85917 0.84259 1.90641 1.46176 1.19663 1.86028 1.48098 1.64493 1.14968 1.04037 1.19686 0.95843 0.74343 0.99232 1.21478 0.93534 0.90984 1.52559 0.91841 1.24912 0.96075 0.98026 0.94394 1.69909 1.20649 1.13312 1.48536 0.86539 0.82630 0.80045 0.78636 1.20351 1.20918 1.19660 1.20157 0.92718 0.96113 0.87172 1.21411 0.99884 0.95301 0.98451 1.21673 0.95699 0.94351 0.96647 1.22113 0.96897 1.01567 0.99458 1.22711 0.98590 0.90684 0.94618 1.67721 1.16246 1.10284 1.25437 1.22820 0.89458 0.99470 0.92370 0.89051 0.91495 0.90856 0.83395 0.84828 0.84977 0.84603 0.94134 0.93869 0.92281 0.88575 0.89561 0.84564 0.85219 0.83237 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.92 37.15 0.33 -2.23 16 2 C 0.06 1.11 1.80 -27.88 -0.05 1.06 16 3 H 0.12 2.09 5.10 -51.93 -0.26 1.83 16 4 O -0.28 -5.01 8.82 -38.26 -0.34 -5.35 16 5 C 0.19 2.75 6.52 -38.71 -0.25 2.49 16 6 C -0.21 -2.66 8.26 -39.48 -0.33 -2.99 16 7 C -0.05 -0.45 10.03 -39.53 -0.40 -0.85 16 8 C -0.17 -1.44 10.02 -39.63 -0.40 -1.84 16 9 C -0.04 -0.35 9.75 -39.18 -0.38 -0.73 16 10 C -0.07 -0.95 5.75 -106.70 -0.61 -1.56 16 11 C 0.27 4.23 14.87 -22.47 -0.33 3.89 16 12 N -0.42 -7.57 18.54 41.84 0.78 -6.79 16 13 C 0.53 10.33 6.96 -10.98 -0.08 10.25 16 14 O -0.55 -11.98 16.02 -13.88 -0.22 -12.20 16 15 N -0.58 -11.03 2.44 -176.43 -0.43 -11.46 16 16 C 0.23 4.73 4.72 -5.19 -0.02 4.70 16 17 C -0.55 -12.72 9.29 -34.44 -0.32 -13.04 16 18 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 19 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -22.00 13.29 55.43 0.74 -21.27 16 21 Si 0.89 18.95 29.54 -169.99 -5.02 13.93 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.16 2.72 5.61 -5.20 -0.03 2.69 16 26 C -0.15 -2.31 5.48 -104.48 -0.57 -2.88 16 27 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 28 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 29 C 0.09 1.20 11.18 -17.54 -0.20 1.00 16 30 N -0.49 -7.62 10.36 -13.25 -0.14 -7.76 16 31 C 0.12 1.82 10.86 -17.55 -0.19 1.63 16 32 H 0.09 1.39 6.22 -51.92 -0.32 1.06 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.93 7.20 -51.93 -0.37 0.55 16 35 H 0.15 1.94 5.66 -52.48 -0.30 1.64 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.04 0.89 4.50 -51.93 -0.23 0.66 16 41 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 42 H 0.10 1.54 8.02 -51.93 -0.42 1.13 16 43 H 0.09 1.46 7.31 -51.93 -0.38 1.08 16 44 H 0.14 2.08 7.96 -52.49 -0.42 1.66 16 45 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -29.89 408.47 -8.83 -38.72 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.63 Total: 6.79 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -4.71 Total: -0.77 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.94 Total: -47.27 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.56 Total: -17.55 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.89 -8.83 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065608214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.024 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds