Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30237 * 126.17247 * 2 1 4 4 N 1.39827 * 110.09217 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.38637 * 180.02562 * 4 3 2 6 6 C 1.36825 * 109.22792 * 0.02562 * 4 3 2 7 7 N 1.32757 * 133.58334 * 180.02562 * 6 4 3 8 8 C 1.31510 * 121.47503 * 179.97438 * 7 6 4 9 9 C 1.38813 * 121.58656 * 359.97438 * 8 7 6 10 10 S 1.76197 * 120.17467 * 180.02562 * 9 8 7 11 11 O 1.42099 * 106.40438 * 23.52079 * 10 9 8 12 12 O 1.42093 * 106.40238 * 156.44443 * 10 9 8 13 13 N 1.65603 * 107.21909 * 269.98093 * 10 9 8 14 14 C 1.46965 * 120.59743 * 269.72034 * 13 10 9 15 15 C 1.53809 * 108.39657 * 124.75526 * 14 13 10 16 16 N 1.46956 * 108.58010 * 49.64306 * 15 14 13 17 17 C 1.36939 * 120.59752 * 124.66833 * 16 15 14 18 18 H 1.08005 * 120.00149 * 208.19517 * 17 16 15 19 19 C 1.38808 * 119.99983 * 28.18532 * 17 16 15 20 20 N 1.31621 * 119.99930 * 17.61004 * 19 17 16 21 21 Si 1.86806 * 120.00019 * 197.61392 * 19 17 16 22 22 H 1.48498 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47160 * 120.00224 * 21 19 17 24 24 H 1.48494 * 109.46927 * 239.99832 * 21 19 17 25 25 C 1.46973 * 118.81248 * 304.64394 * 16 15 14 26 26 C 1.46969 * 120.59176 * 90.00045 * 13 10 9 27 27 C 1.37012 * 119.64675 * 0.02562 * 9 8 7 28 28 C 1.39995 * 118.15419 * 359.97438 * 27 9 8 29 29 H 1.08999 * 109.47104 * 90.02490 * 1 2 3 30 30 H 1.09008 * 109.46952 * 210.02354 * 1 2 3 31 31 H 1.08996 * 109.47442 * 330.02040 * 1 2 3 32 32 H 1.09005 * 109.47813 * 269.98146 * 5 4 3 33 33 H 1.09005 * 109.47225 * 29.97927 * 5 4 3 34 34 H 1.09007 * 109.47294 * 149.97928 * 5 4 3 35 35 H 1.07996 * 119.20776 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.61290 * 244.54238 * 14 13 10 37 37 H 1.09007 * 109.60207 * 5.05685 * 14 13 10 38 38 H 1.09003 * 109.74406 * 289.85048 * 15 14 13 39 39 H 1.09005 * 109.67494 * 169.39025 * 15 14 13 40 40 H 0.97004 * 119.99509 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.60805 * 295.48199 * 25 16 15 42 42 H 1.09002 * 109.74808 * 175.05775 * 25 16 15 43 43 H 1.08999 * 109.61156 * 354.94937 * 26 13 10 44 44 H 1.09003 * 109.61011 * 115.45979 * 26 13 10 45 45 H 1.08001 * 120.92475 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0513 0.0000 4 7 3.6192 0.6640 -0.0006 5 6 4.7652 1.5767 -0.0002 6 6 3.6944 -0.7022 -0.0016 7 7 4.7048 -1.5632 -0.0020 8 6 4.5000 -2.8623 -0.0024 9 6 3.2187 -3.3963 -0.0020 10 16 2.9872 -5.1430 -0.0020 11 8 4.1737 -5.7050 0.5416 12 8 1.6960 -5.3766 0.5432 13 7 2.9217 -5.6289 -1.5838 14 6 1.6374 -5.6880 -2.2956 15 6 1.7493 -4.8351 -3.5707 16 7 2.9738 -5.2207 -4.2859 17 6 2.9197 -5.6224 -5.5940 18 1 3.6602 -6.3076 -5.9795 19 6 1.9131 -5.1492 -6.4243 20 7 1.2300 -4.0765 -6.0850 21 14 1.5277 -6.0348 -8.0233 22 1 2.4309 -7.2042 -8.1715 23 1 0.1171 -6.4985 -8.0048 24 1 1.7284 -5.1059 -9.1644 25 6 4.2576 -5.1670 -3.5725 26 6 4.1463 -6.0145 -2.2991 27 6 2.1350 -2.5579 -0.0016 28 6 2.3678 -1.1775 -0.0011 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 5.0495 1.8036 -1.0278 33 1 4.4950 2.4990 0.5140 34 1 5.6039 1.1066 0.5134 35 1 5.3491 -3.5297 -0.0023 36 1 1.4138 -6.7211 -2.5617 37 1 0.8470 -5.2926 -1.6574 38 1 1.7984 -3.7792 -3.3043 39 1 0.8826 -5.0117 -4.2076 40 1 0.5263 -3.7460 -6.6651 41 1 4.4852 -4.1348 -3.3062 42 1 5.0491 -5.5639 -4.2082 43 1 5.0133 -5.8350 -1.6633 44 1 4.0973 -7.0704 -2.5654 45 1 1.1291 -2.9511 -0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065613307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = 67.225675 kcal Electronic energy + Delta-G solvation = -31863.103346 eV Core-core repulsion = 27624.557453 eV Total energy + Delta-G solvation = -4238.545893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.131 amu Computer time = 6.40 seconds Orbital eigenvalues (eV) -41.81274 -38.39059 -37.64327 -37.15935 -35.71951 -34.66431 -33.86636 -32.18443 -31.15057 -30.54202 -30.20640 -29.75995 -26.45761 -26.03504 -24.23150 -23.36694 -23.07645 -22.92046 -20.28587 -20.06131 -18.87413 -18.13711 -17.64575 -17.41283 -16.86420 -16.22484 -16.11670 -15.63255 -15.41290 -14.83600 -14.13909 -13.97346 -13.87893 -13.80028 -13.69234 -13.65838 -13.61266 -13.46058 -13.36780 -13.01476 -12.97431 -12.56207 -12.20802 -12.09486 -12.02766 -11.96563 -11.69424 -11.46608 -11.18130 -10.98436 -10.87152 -10.83777 -10.77327 -10.43806 -10.27190 -10.00937 -9.81032 -9.68593 -9.24666 -8.83727 -8.65081 -8.50907 -6.74371 -5.88102 -3.31774 0.45256 0.57341 0.75583 1.87069 2.14874 3.06509 3.31991 3.40869 3.42486 3.44027 3.82873 3.90957 3.98084 4.11893 4.42230 4.47434 4.65371 4.76718 4.91026 4.98791 5.07311 5.10790 5.20068 5.25695 5.28229 5.35426 5.46485 5.47014 5.52843 5.66319 5.71808 5.88221 5.99822 6.01376 6.21504 6.23276 6.29605 6.38272 6.49011 6.57512 6.77019 6.86129 7.18489 7.20476 7.49532 7.59838 7.71505 8.33908 9.10316 9.73222 10.29923 11.19661 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.003715 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.163598 B = 7536.031740 C = 8836.701801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.128 3.872 3 N -0.246 5.246 4 N -0.393 5.393 5 C 0.111 3.889 6 C 0.351 3.649 7 N -0.510 5.510 8 C 0.262 3.738 9 C -0.770 4.770 10 S 2.700 3.300 11 O -0.961 6.961 12 O -0.960 6.960 13 N -0.984 5.984 14 C 0.094 3.906 15 C 0.157 3.843 16 N -0.588 5.588 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.131 3.869 26 C 0.104 3.896 27 C 0.122 3.878 28 C -0.245 4.245 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.180 0.820 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.100 0.900 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 6.447 13.888 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 N -0.059 5.059 4 N -0.181 5.181 5 C -0.030 4.030 6 C 0.111 3.889 7 N -0.225 5.225 8 C 0.090 3.910 9 C -0.859 4.859 10 S 2.788 3.212 11 O -0.951 6.951 12 O -0.950 6.950 13 N -0.824 5.824 14 C -0.032 4.032 15 C 0.030 3.970 16 N -0.310 5.310 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.002 3.998 26 C -0.023 4.023 27 C 0.094 3.906 28 C -0.256 4.256 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.197 0.803 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.877 7.906 14.508 16.771 hybrid contribution -0.747 -0.562 -1.325 1.621 sum 2.130 7.344 13.183 15.240 Atomic orbital electron populations 1.20388 0.84772 1.04312 1.04448 1.23605 0.97061 0.88025 0.96391 1.76733 0.86137 1.22652 1.20385 1.48184 1.04803 1.01551 1.63562 1.21864 0.84515 0.93019 1.03596 1.19194 0.90601 0.86326 0.92800 1.66858 1.32832 1.02822 1.19970 1.22408 0.94811 0.89679 0.84140 1.31686 1.00761 1.29003 1.24482 1.01795 0.73435 0.73076 0.72869 1.93546 1.48832 1.75886 1.76847 1.93548 1.40367 1.84371 1.76746 1.57421 1.14732 1.79973 1.30244 1.22470 0.81954 1.02692 0.96070 1.21260 0.92180 0.93829 0.89746 1.43898 1.00082 1.77988 1.09061 1.19247 1.12907 1.20385 0.85767 0.91417 1.25046 1.00802 0.95930 0.97738 1.70029 1.25067 1.21210 1.38349 0.86224 0.78057 0.79231 0.83253 1.20188 1.21474 1.21791 1.21288 0.90328 0.96195 0.91940 1.22088 0.84327 1.00594 0.95286 1.20497 0.98952 0.90126 0.81041 1.20388 0.93927 0.94914 1.16335 0.88924 0.89398 0.89845 0.90788 0.89286 0.89030 0.80302 0.91080 0.90446 0.96117 0.88212 0.93590 0.96170 0.91492 0.90199 0.90869 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.48 36.01 0.38 -0.32 16 2 C 0.13 1.65 7.44 -80.22 -0.60 1.05 16 3 N -0.25 -3.40 12.40 34.82 0.43 -2.97 16 4 N -0.39 -5.42 4.04 -67.21 -0.27 -5.69 16 5 C 0.11 1.05 11.44 59.85 0.68 1.73 16 6 C 0.35 5.40 7.97 -156.12 -1.24 4.16 16 7 N -0.51 -7.76 10.40 -12.34 -0.13 -7.89 16 8 C 0.26 3.72 10.65 -17.48 -0.19 3.54 16 9 C -0.77 -11.14 5.95 -39.81 -0.24 -11.37 16 10 S 2.70 40.77 5.70 -107.50 -0.61 40.15 16 11 O -0.96 -15.48 15.97 -57.17 -0.91 -16.40 16 12 O -0.96 -15.85 16.00 -57.17 -0.91 -16.76 16 13 N -0.98 -15.91 3.26 -113.00 -0.37 -16.28 16 14 C 0.09 1.65 6.58 -3.37 -0.02 1.62 16 15 C 0.16 3.42 5.53 -3.37 -0.02 3.40 16 16 N -0.59 -13.67 2.97 -171.76 -0.51 -14.18 16 17 C -0.25 -6.55 9.58 -15.06 -0.14 -6.69 16 18 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 20 N -0.90 -24.90 11.20 55.49 0.62 -24.28 16 21 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.50 6.67 -3.59 -0.02 2.47 16 26 C 0.10 1.65 6.55 -3.60 -0.02 1.63 16 27 C 0.12 1.72 9.64 -39.37 -0.38 1.34 16 28 C -0.24 -3.59 6.35 -105.18 -0.67 -4.26 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.18 2.09 7.59 -52.49 -0.40 1.70 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.19 7.08 -51.93 -0.37 0.82 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 2.43 5.98 -51.93 -0.31 2.12 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 43 H 0.08 1.07 7.09 -51.93 -0.37 0.70 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.16 1.81 7.67 -52.49 -0.40 1.41 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -34.05 383.54 -10.52 -44.57 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.04 Total: -0.13 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.57 Total: -1.69 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.22 Total: -71.29 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.83 Total: -33.16 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: 40.77 SS G_CDS: -0.61 Total: 40.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.05 -10.52 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065613307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.797 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.40 seconds