Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30237 * 126.17247 * 2 1 4 4 N 1.39827 * 110.09217 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.38637 * 180.02562 * 4 3 2 6 6 C 1.36825 * 109.22792 * 0.02562 * 4 3 2 7 7 N 1.32757 * 133.58334 * 180.02562 * 6 4 3 8 8 C 1.31510 * 121.47503 * 179.97438 * 7 6 4 9 9 C 1.38813 * 121.58656 * 359.97438 * 8 7 6 10 10 S 1.76197 * 120.17467 * 180.02562 * 9 8 7 11 11 O 1.42099 * 106.40438 * 23.52079 * 10 9 8 12 12 O 1.42093 * 106.40238 * 156.44443 * 10 9 8 13 13 N 1.65603 * 107.21909 * 269.98093 * 10 9 8 14 14 C 1.46965 * 120.59743 * 269.72034 * 13 10 9 15 15 C 1.53809 * 108.39657 * 124.75526 * 14 13 10 16 16 N 1.46956 * 108.58010 * 49.64306 * 15 14 13 17 17 C 1.36939 * 120.59752 * 124.66833 * 16 15 14 18 18 H 1.08005 * 120.00149 * 208.19517 * 17 16 15 19 19 C 1.38808 * 119.99983 * 28.18532 * 17 16 15 20 20 N 1.31621 * 119.99930 * 17.61004 * 19 17 16 21 21 Si 1.86806 * 120.00019 * 197.61392 * 19 17 16 22 22 H 1.48498 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47160 * 120.00224 * 21 19 17 24 24 H 1.48494 * 109.46927 * 239.99832 * 21 19 17 25 25 C 1.46973 * 118.81248 * 304.64394 * 16 15 14 26 26 C 1.46969 * 120.59176 * 90.00045 * 13 10 9 27 27 C 1.37012 * 119.64675 * 0.02562 * 9 8 7 28 28 C 1.39995 * 118.15419 * 359.97438 * 27 9 8 29 29 H 1.08999 * 109.47104 * 90.02490 * 1 2 3 30 30 H 1.09008 * 109.46952 * 210.02354 * 1 2 3 31 31 H 1.08996 * 109.47442 * 330.02040 * 1 2 3 32 32 H 1.09005 * 109.47813 * 269.98146 * 5 4 3 33 33 H 1.09005 * 109.47225 * 29.97927 * 5 4 3 34 34 H 1.09007 * 109.47294 * 149.97928 * 5 4 3 35 35 H 1.07996 * 119.20776 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.61290 * 244.54238 * 14 13 10 37 37 H 1.09007 * 109.60207 * 5.05685 * 14 13 10 38 38 H 1.09003 * 109.74406 * 289.85048 * 15 14 13 39 39 H 1.09005 * 109.67494 * 169.39025 * 15 14 13 40 40 H 0.97004 * 119.99509 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.60805 * 295.48199 * 25 16 15 42 42 H 1.09002 * 109.74808 * 175.05775 * 25 16 15 43 43 H 1.08999 * 109.61156 * 354.94937 * 26 13 10 44 44 H 1.09003 * 109.61011 * 115.45979 * 26 13 10 45 45 H 1.08001 * 120.92475 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0513 0.0000 4 7 3.6192 0.6640 -0.0006 5 6 4.7652 1.5767 -0.0002 6 6 3.6944 -0.7022 -0.0016 7 7 4.7048 -1.5632 -0.0020 8 6 4.5000 -2.8623 -0.0024 9 6 3.2187 -3.3963 -0.0020 10 16 2.9872 -5.1430 -0.0020 11 8 4.1737 -5.7050 0.5416 12 8 1.6960 -5.3766 0.5432 13 7 2.9217 -5.6289 -1.5838 14 6 1.6374 -5.6880 -2.2956 15 6 1.7493 -4.8351 -3.5707 16 7 2.9738 -5.2207 -4.2859 17 6 2.9197 -5.6224 -5.5940 18 1 3.6602 -6.3076 -5.9795 19 6 1.9131 -5.1492 -6.4243 20 7 1.2300 -4.0765 -6.0850 21 14 1.5277 -6.0348 -8.0233 22 1 2.4309 -7.2042 -8.1715 23 1 0.1171 -6.4985 -8.0048 24 1 1.7284 -5.1059 -9.1644 25 6 4.2576 -5.1670 -3.5725 26 6 4.1463 -6.0145 -2.2991 27 6 2.1350 -2.5579 -0.0016 28 6 2.3678 -1.1775 -0.0011 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 5.0495 1.8036 -1.0278 33 1 4.4950 2.4990 0.5140 34 1 5.6039 1.1066 0.5134 35 1 5.3491 -3.5297 -0.0023 36 1 1.4138 -6.7211 -2.5617 37 1 0.8470 -5.2926 -1.6574 38 1 1.7984 -3.7792 -3.3043 39 1 0.8826 -5.0117 -4.2076 40 1 0.5263 -3.7460 -6.6651 41 1 4.4852 -4.1348 -3.3062 42 1 5.0491 -5.5639 -4.2082 43 1 5.0133 -5.8350 -1.6633 44 1 4.0973 -7.0704 -2.5654 45 1 1.1291 -2.9511 -0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065613307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = 44.092221 kcal Electronic energy + Delta-G solvation = -31864.106488 eV Core-core repulsion = 27624.557453 eV Total energy + Delta-G solvation = -4239.549035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.131 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -42.83757 -39.43925 -39.16507 -38.41772 -36.98155 -35.61424 -35.56798 -33.21474 -32.90660 -31.78965 -31.57371 -30.53439 -28.19064 -26.94149 -25.28793 -25.01895 -24.44159 -24.16062 -21.68511 -21.17605 -20.15825 -19.46191 -18.76846 -18.64115 -17.94275 -17.84708 -17.14496 -16.86233 -16.67624 -16.52478 -15.47188 -15.42703 -15.35389 -15.04898 -14.98169 -14.70743 -14.61268 -14.52190 -14.47433 -14.39770 -13.75901 -13.63330 -13.50047 -13.26248 -13.22314 -12.98333 -12.91268 -12.89086 -12.82358 -12.62236 -12.43630 -12.09333 -12.00799 -11.96824 -11.88832 -11.77554 -11.38851 -10.83039 -10.57745 -10.33525 -10.13568 -9.64721 -8.60244 -7.84557 -5.30509 -0.73365 -0.48320 -0.37364 0.93516 1.14884 1.48528 1.52324 1.61190 1.84723 2.31582 2.53737 2.70398 2.90132 2.94659 3.08409 3.30281 3.41348 3.62687 3.68093 3.74027 3.87223 4.06147 4.20546 4.21474 4.27498 4.35131 4.46364 4.53457 4.55043 4.62112 4.70764 4.72185 4.72562 4.77203 4.88469 4.93034 5.07192 5.15558 5.27371 5.32348 5.35575 5.52266 5.63454 5.67381 5.79656 6.16761 6.41242 6.53187 7.17046 7.87164 8.39069 9.20434 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.003715 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.163598 B = 7536.031740 C = 8836.701801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.128 3.872 3 N -0.263 5.263 4 N -0.398 5.398 5 C 0.103 3.897 6 C 0.327 3.673 7 N -0.522 5.522 8 C 0.254 3.746 9 C -0.777 4.777 10 S 2.724 3.276 11 O -0.967 6.967 12 O -0.971 6.971 13 N -0.987 5.987 14 C 0.107 3.893 15 C 0.164 3.836 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.069 0.931 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.298 1.298 25 C 0.127 3.873 26 C 0.109 3.891 27 C 0.119 3.881 28 C -0.265 4.265 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.202 0.798 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.001 0.999 39 H 0.070 0.930 40 H 0.249 0.751 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 5.849 14.867 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 N -0.077 5.077 4 N -0.186 5.186 5 C -0.037 4.037 6 C 0.087 3.913 7 N -0.237 5.237 8 C 0.082 3.918 9 C -0.867 4.867 10 S 2.813 3.187 11 O -0.957 6.957 12 O -0.962 6.962 13 N -0.825 5.825 14 C -0.020 4.020 15 C 0.037 3.963 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.226 1.226 25 C 0.000 4.000 26 C -0.017 4.017 27 C 0.091 3.909 28 C -0.276 4.276 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.218 0.782 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.019 0.981 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.066 7.299 15.506 17.410 hybrid contribution -0.728 -0.292 -1.594 1.776 sum 2.338 7.007 13.913 15.752 Atomic orbital electron populations 1.20600 0.82036 1.06080 1.05260 1.24245 0.98677 0.87066 0.95054 1.76712 0.86401 1.23208 1.21377 1.48578 1.05588 1.01538 1.62892 1.22147 0.83796 0.93335 1.04388 1.19562 0.91197 0.87207 0.93336 1.66892 1.33010 1.03184 1.20621 1.22837 0.95547 0.89806 0.83596 1.31582 1.01188 1.28402 1.25550 1.01078 0.72850 0.72799 0.72003 1.93534 1.49056 1.76369 1.76767 1.93529 1.41046 1.84773 1.76831 1.57443 1.14306 1.80235 1.30547 1.22207 0.83292 1.01939 0.94548 1.21067 0.90753 0.93508 0.90998 1.44169 1.01933 1.78082 1.08817 1.19558 1.12517 1.19760 0.86986 0.91289 1.25700 1.01208 0.96668 1.00607 1.70166 1.25729 1.22676 1.39391 0.85289 0.77663 0.78226 0.79707 1.19140 1.21650 1.22558 1.21437 0.88752 0.96572 0.93249 1.22047 0.85325 1.00152 0.94185 1.20812 0.99893 0.90053 0.80166 1.20710 0.94291 0.95683 1.16894 0.88375 0.87597 0.88158 0.90275 0.87250 0.88228 0.78187 0.90742 0.88224 0.98123 0.91200 0.94151 0.96831 0.90972 0.87197 0.90164 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.48 71.24 0.75 -0.53 16 2 C 0.13 3.19 7.44 44.77 0.33 3.52 16 3 N -0.26 -7.12 12.40 -43.75 -0.54 -7.66 16 4 N -0.40 -10.81 4.04 -366.54 -1.48 -12.29 16 5 C 0.10 1.87 11.44 127.77 1.46 3.33 16 6 C 0.33 9.97 7.97 134.12 1.07 11.04 16 7 N -0.52 -15.58 10.40 -192.96 -2.01 -17.59 16 8 C 0.25 6.94 10.65 84.88 0.90 7.84 16 9 C -0.78 -21.39 5.95 22.12 0.13 -21.25 16 10 S 2.72 76.36 5.70 -56.49 -0.32 76.04 16 11 O -0.97 -28.64 15.97 -128.00 -2.04 -30.68 16 12 O -0.97 -29.86 16.00 -128.00 -2.05 -31.91 16 13 N -0.99 -29.99 3.26 -511.43 -1.67 -31.66 16 14 C 0.11 3.58 6.58 86.56 0.57 4.15 16 15 C 0.16 7.18 5.53 86.57 0.48 7.66 16 16 N -0.61 -28.15 2.97 -697.34 -2.07 -30.22 16 17 C -0.26 -13.32 9.58 84.03 0.80 -12.52 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -2.46 4.90 84.86 0.42 -2.04 16 20 N -0.93 -52.61 11.20 21.65 0.24 -52.37 16 21 Si 0.96 43.07 29.59 68.60 2.03 45.10 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.13 4.73 6.67 86.41 0.58 5.30 16 26 C 0.11 3.23 6.55 86.41 0.57 3.80 16 27 C 0.12 3.20 9.64 22.41 0.22 3.42 16 28 C -0.26 -7.60 6.35 -20.23 -0.13 -7.73 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.20 4.32 7.59 -2.91 -0.02 4.30 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.10 2.89 7.08 -2.38 -0.02 2.87 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.07 3.48 5.98 -2.38 -0.01 3.47 16 40 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16 43 H 0.11 2.61 7.09 -2.39 -0.02 2.59 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.18 3.80 7.67 -2.91 -0.02 3.78 16 Total: -1.00 -72.79 383.54 -0.74 -73.53 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.02 Total: 13.70 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 8.14 Total: 6.00 kcal Atomic # 7 Polarization: -144.27 SS G_CDS: -7.52 Total: -151.79 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -4.09 Total: -62.59 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 76.36 SS G_CDS: -0.32 Total: 76.04 kcal Total: -72.79 -0.74 -73.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065613307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.626 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds