Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46636 * 2 1 4 4 N 1.46506 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.36947 * 119.99652 * 269.99834 * 4 3 2 6 6 H 1.08000 * 120.00015 * 139.95033 * 5 4 3 7 7 C 1.38988 * 120.00174 * 319.94644 * 5 4 3 8 8 N 1.31395 * 120.00382 * 341.39941 * 7 5 4 9 9 Si 1.86807 * 120.00071 * 161.39167 * 7 5 4 10 10 H 1.48502 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46666 * 120.00060 * 9 7 5 12 12 H 1.48498 * 109.47410 * 240.00382 * 9 7 5 13 13 C 1.34769 * 119.99915 * 89.99562 * 4 3 2 14 14 O 1.21626 * 120.00405 * 355.09747 * 13 4 3 15 15 C 1.47429 * 120.00100 * 175.10001 * 13 4 3 16 16 N 1.34442 * 125.77174 * 355.68132 * 15 13 4 17 17 N 1.28747 * 109.58496 * 180.02562 * 16 15 13 18 18 N 1.40210 * 108.40494 * 359.97438 * 17 16 15 19 19 C 1.40192 * 126.60965 * 179.97438 * 18 17 16 20 20 C 1.39946 * 119.70658 * 43.95348 * 19 18 17 21 21 C 1.35919 * 120.99912 * 179.68340 * 20 19 18 22 22 C 1.40637 * 119.98105 * 0.60422 * 21 20 19 23 23 N 1.33700 * 120.93287 * 179.67802 * 22 21 20 24 24 C 1.31075 * 121.35958 * 180.02562 * 23 22 21 25 25 C 1.39330 * 121.76022 * 359.97438 * 24 23 22 26 26 C 1.36573 * 119.91737 * 359.97438 * 25 24 23 27 27 C 1.40811 * 118.15906 * 0.02562 * 26 25 24 28 28 C 1.37686 * 119.71403 * 224.22244 * 19 18 17 29 29 C 1.35099 * 106.77954 * 359.74082 * 18 17 16 30 30 C 1.50698 * 126.61144 * 180.25236 * 29 18 17 31 31 H 1.09006 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47144 * 300.00190 * 1 2 3 33 33 H 1.08995 * 109.47203 * 60.00570 * 1 2 3 34 34 H 1.08999 * 109.47144 * 239.99810 * 2 1 3 35 35 H 1.09001 * 109.46922 * 119.99084 * 2 1 3 36 36 H 1.08999 * 109.47509 * 60.00033 * 3 2 1 37 37 H 1.09007 * 109.47122 * 299.99312 * 3 2 1 38 38 H 0.96997 * 120.00966 * 185.04261 * 8 7 5 39 39 H 1.08001 * 119.50156 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.00742 * 180.25674 * 21 20 19 41 41 H 1.07997 * 119.12406 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.04587 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.92227 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.26850 * 359.97438 * 28 19 18 45 45 H 1.09000 * 109.47559 * 264.04329 * 30 29 18 46 46 H 1.08991 * 109.47017 * 24.04633 * 30 29 18 47 47 H 1.09007 * 109.46873 * 144.05084 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1901 1.4426 1.1851 6 1 5.0803 0.8408 1.2944 7 6 3.7400 2.2170 2.2479 8 7 2.9048 3.2079 2.0314 9 14 4.3224 1.8489 3.9843 10 1 5.2527 0.6917 3.9595 11 1 5.0250 3.0366 4.5329 12 1 3.1530 1.5261 4.8407 13 6 4.1783 1.4428 -1.1680 14 8 3.5731 1.3528 -2.2192 15 6 5.6485 1.5520 -1.1710 16 7 6.4250 1.7384 -0.0894 17 7 7.6604 1.7883 -0.4484 18 7 7.7239 1.6274 -1.8398 19 6 8.8828 1.6210 -2.6286 20 6 10.0072 0.9044 -2.2034 21 6 11.1422 0.8749 -2.9505 22 6 11.2029 1.5818 -4.1648 23 7 12.3119 1.5712 -4.9115 24 6 12.3778 2.2274 -6.0443 25 6 11.3001 2.9666 -6.5274 26 6 10.1362 3.0194 -5.8148 27 6 10.0692 2.3132 -4.5984 28 6 8.9067 2.3241 -3.8122 29 6 6.4534 1.4747 -2.2732 30 6 6.0089 1.2641 -3.6976 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9564 -0.8901 38 1 2.6477 3.7937 2.7605 39 1 9.9709 0.3628 -1.2697 40 1 11.9992 0.3134 -2.6090 41 1 13.2915 2.1935 -6.6189 42 1 11.3849 3.4973 -7.4643 43 1 9.2906 3.5870 -6.1742 44 1 8.0374 2.8786 -4.1336 45 1 5.7212 2.2207 -4.1337 46 1 6.8279 0.8337 -4.2739 47 1 5.1560 0.5854 -3.7155 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066827185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = 129.727293 kcal Electronic energy + Delta-G solvation = -32081.352347 eV Core-core repulsion = 27845.905870 eV Total energy + Delta-G solvation = -4235.446477 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.95213 -41.00469 -38.41404 -37.62442 -35.16804 -34.26077 -33.66563 -32.77981 -31.92413 -31.22211 -30.60450 -29.37189 -27.58578 -25.81637 -24.85470 -24.51966 -24.23531 -22.72298 -22.12214 -21.34882 -20.39472 -19.32268 -18.62392 -17.97280 -17.28840 -17.00321 -15.98471 -15.68993 -15.38500 -14.89281 -14.72118 -14.62703 -14.47133 -14.35958 -13.91312 -13.82220 -13.65340 -13.47359 -13.46112 -13.00912 -12.91946 -12.76258 -12.45941 -12.26784 -12.08634 -11.92765 -11.60909 -11.34873 -11.33214 -11.21714 -10.96488 -10.93932 -10.79295 -10.54586 -10.23545 -10.18314 -9.98721 -9.88151 -9.70343 -9.08791 -9.02943 -8.67040 -8.61294 -8.31777 -7.41174 -6.30667 -3.95324 -0.09810 0.33424 1.44632 1.71287 2.29885 2.52583 2.61835 3.21871 3.29823 3.36082 3.70227 3.91644 4.16288 4.18322 4.31137 4.37177 4.48436 4.52632 4.55695 4.66943 4.74722 4.88272 5.02383 5.06861 5.12498 5.33629 5.40461 5.45029 5.56912 5.64836 5.70965 5.71253 5.80948 5.82598 5.85289 5.94940 6.06794 6.09770 6.14860 6.23369 6.32766 6.43911 6.54384 6.66335 6.70394 6.82785 6.99798 7.12099 7.40745 7.52396 7.65187 7.95955 8.50156 8.62044 9.15119 9.48782 9.90784 10.72181 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.002446 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.913468 B =11445.646495 C =12652.301153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.116 3.884 4 N -0.412 5.412 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.048 3.952 8 N -0.864 5.864 9 Si 0.916 3.084 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.533 3.467 14 O -0.605 6.605 15 C -0.046 4.046 16 N -0.150 5.150 17 N -0.090 5.090 18 N -0.339 5.339 19 C 0.158 3.842 20 C -0.085 4.085 21 C -0.075 4.075 22 C 0.126 3.874 23 N -0.472 5.472 24 C 0.132 3.868 25 C -0.174 4.174 26 C -0.052 4.052 27 C -0.088 4.088 28 C -0.096 4.096 29 C 0.093 3.907 30 C -0.083 4.083 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.269 0.731 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -1.985 -14.656 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.126 5.126 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.158 4.158 8 N -0.501 5.501 9 Si 0.742 3.258 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.321 3.679 14 O -0.492 6.492 15 C -0.183 4.183 16 N -0.022 5.022 17 N -0.067 5.067 18 N -0.120 5.120 19 C 0.066 3.934 20 C -0.106 4.106 21 C -0.094 4.094 22 C 0.004 3.996 23 N -0.179 5.179 24 C -0.041 4.041 25 C -0.194 4.194 26 C -0.078 4.078 27 C -0.091 4.091 28 C -0.118 4.118 29 C -0.040 4.040 30 C -0.141 4.141 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.735 -2.229 -13.252 19.216 hybrid contribution -0.768 0.498 -0.135 0.926 sum 12.967 -1.731 -13.387 18.718 Atomic orbital electron populations 1.21656 0.96546 1.00454 1.01406 1.21820 0.94676 0.99214 1.01490 1.21509 0.80777 0.94846 1.03624 1.43377 1.04978 1.59830 1.04441 1.19768 1.10685 1.26612 0.87422 0.87811 1.25402 0.96062 0.93959 1.00390 1.69841 1.33281 1.13945 1.33042 0.86030 0.78524 0.78972 0.82229 1.18955 1.20677 1.20737 1.16986 0.83417 0.82911 0.84595 1.90595 1.68316 1.58659 1.31610 1.21497 0.96805 1.12560 0.87429 1.75172 0.95953 1.07019 1.24104 1.82183 1.14896 1.24114 0.85540 1.47575 1.03938 1.51825 1.08685 1.17432 0.85791 0.98931 0.91219 1.20822 0.91305 0.97690 1.00788 1.20670 0.98114 0.98454 0.92174 1.18929 0.89189 0.96336 0.95099 1.68057 1.25036 1.18961 1.05893 1.23011 0.98302 0.91063 0.91701 1.21916 0.94287 1.01405 1.01788 1.21502 0.98493 0.95579 0.92205 1.18555 0.94429 0.99879 0.96227 1.21186 0.98269 0.98372 0.93952 1.21894 0.83270 1.00197 0.98687 1.20576 1.02401 1.04331 0.86822 0.93626 0.92962 0.93137 0.92833 0.92153 0.87611 0.92597 0.92066 0.83809 0.83544 0.82216 0.84221 0.83975 0.83992 0.89550 0.91744 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.12 2.74 4.96 -4.04 -0.02 2.72 16 4 N -0.41 -10.58 2.50 -116.02 -0.29 -10.87 16 5 C -0.32 -8.32 7.67 -14.99 -0.11 -8.43 16 6 H 0.10 2.78 6.31 -52.49 -0.33 2.45 16 7 C 0.05 1.24 5.00 -17.46 -0.09 1.16 16 8 N -0.86 -23.22 11.46 55.50 0.64 -22.58 16 9 Si 0.92 20.57 29.60 -169.99 -5.03 15.54 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.53 13.33 7.62 -12.52 -0.10 13.24 16 14 O -0.60 -15.13 14.56 5.25 0.08 -15.05 16 15 C -0.05 -1.04 6.71 -83.54 -0.56 -1.60 16 16 N -0.15 -3.54 9.25 32.85 0.30 -3.24 16 17 N -0.09 -1.88 13.65 60.35 0.82 -1.06 16 18 N -0.34 -5.93 3.69 -6.70 -0.02 -5.95 16 19 C 0.16 2.19 6.07 -83.59 -0.51 1.69 16 20 C -0.08 -1.03 9.77 -39.77 -0.39 -1.42 16 21 C -0.08 -0.81 9.96 -39.51 -0.39 -1.20 16 22 C 0.13 1.42 6.60 -84.82 -0.56 0.86 16 23 N -0.47 -4.99 10.34 -10.96 -0.11 -5.11 16 24 C 0.13 1.00 11.15 -17.47 -0.19 0.81 16 25 C -0.17 -1.12 10.03 -39.78 -0.40 -1.52 16 26 C -0.05 -0.40 9.89 -39.21 -0.39 -0.79 16 27 C -0.09 -0.93 5.74 -106.81 -0.61 -1.54 16 28 C -0.10 -1.11 8.17 -38.99 -0.32 -1.43 16 29 C 0.09 1.72 6.83 -81.71 -0.56 1.17 16 30 C -0.08 -1.20 8.24 36.00 0.30 -0.90 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 2.66 5.60 -51.93 -0.29 2.37 16 37 H 0.06 1.35 7.49 -51.93 -0.39 0.96 16 38 H 0.27 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.14 1.49 7.20 -52.48 -0.38 1.11 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 0.74 7.05 -51.93 -0.37 0.38 16 47 H 0.11 1.72 6.89 -51.92 -0.36 1.37 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -32.25 394.94 -8.27 -40.52 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.90 Total: 3.91 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -4.70 Total: -2.07 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 1.34 Total: -48.80 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.25 -8.27 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066827185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.246 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds