Wall clock time and date at job start Tue Mar 31 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46636 * 2 1 4 4 N 1.46506 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.36947 * 119.99652 * 269.99834 * 4 3 2 6 6 H 1.08000 * 120.00015 * 139.95033 * 5 4 3 7 7 C 1.38988 * 120.00174 * 319.94644 * 5 4 3 8 8 N 1.31395 * 120.00382 * 341.39941 * 7 5 4 9 9 Si 1.86807 * 120.00071 * 161.39167 * 7 5 4 10 10 H 1.48502 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46666 * 120.00060 * 9 7 5 12 12 H 1.48498 * 109.47410 * 240.00382 * 9 7 5 13 13 C 1.34769 * 119.99915 * 89.99562 * 4 3 2 14 14 O 1.21626 * 120.00405 * 355.09747 * 13 4 3 15 15 C 1.47429 * 120.00100 * 175.10001 * 13 4 3 16 16 N 1.34442 * 125.77174 * 355.68132 * 15 13 4 17 17 N 1.28747 * 109.58496 * 180.02562 * 16 15 13 18 18 N 1.40210 * 108.40494 * 359.97438 * 17 16 15 19 19 C 1.40192 * 126.60965 * 179.97438 * 18 17 16 20 20 C 1.39946 * 119.70658 * 43.95348 * 19 18 17 21 21 C 1.35919 * 120.99912 * 179.68340 * 20 19 18 22 22 C 1.40637 * 119.98105 * 0.60422 * 21 20 19 23 23 N 1.33700 * 120.93287 * 179.67802 * 22 21 20 24 24 C 1.31075 * 121.35958 * 180.02562 * 23 22 21 25 25 C 1.39330 * 121.76022 * 359.97438 * 24 23 22 26 26 C 1.36573 * 119.91737 * 359.97438 * 25 24 23 27 27 C 1.40811 * 118.15906 * 0.02562 * 26 25 24 28 28 C 1.37686 * 119.71403 * 224.22244 * 19 18 17 29 29 C 1.35099 * 106.77954 * 359.74082 * 18 17 16 30 30 C 1.50698 * 126.61144 * 180.25236 * 29 18 17 31 31 H 1.09006 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47144 * 300.00190 * 1 2 3 33 33 H 1.08995 * 109.47203 * 60.00570 * 1 2 3 34 34 H 1.08999 * 109.47144 * 239.99810 * 2 1 3 35 35 H 1.09001 * 109.46922 * 119.99084 * 2 1 3 36 36 H 1.08999 * 109.47509 * 60.00033 * 3 2 1 37 37 H 1.09007 * 109.47122 * 299.99312 * 3 2 1 38 38 H 0.96997 * 120.00966 * 185.04261 * 8 7 5 39 39 H 1.08001 * 119.50156 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.00742 * 180.25674 * 21 20 19 41 41 H 1.07997 * 119.12406 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.04587 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.92227 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.26850 * 359.97438 * 28 19 18 45 45 H 1.09000 * 109.47559 * 264.04329 * 30 29 18 46 46 H 1.08991 * 109.47017 * 24.04633 * 30 29 18 47 47 H 1.09007 * 109.46873 * 144.05084 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1901 1.4426 1.1851 6 1 5.0803 0.8408 1.2944 7 6 3.7400 2.2170 2.2479 8 7 2.9048 3.2079 2.0314 9 14 4.3224 1.8489 3.9843 10 1 5.2527 0.6917 3.9595 11 1 5.0250 3.0366 4.5329 12 1 3.1530 1.5261 4.8407 13 6 4.1783 1.4428 -1.1680 14 8 3.5731 1.3528 -2.2192 15 6 5.6485 1.5520 -1.1710 16 7 6.4250 1.7384 -0.0894 17 7 7.6604 1.7883 -0.4484 18 7 7.7239 1.6274 -1.8398 19 6 8.8828 1.6210 -2.6286 20 6 10.0072 0.9044 -2.2034 21 6 11.1422 0.8749 -2.9505 22 6 11.2029 1.5818 -4.1648 23 7 12.3119 1.5712 -4.9115 24 6 12.3778 2.2274 -6.0443 25 6 11.3001 2.9666 -6.5274 26 6 10.1362 3.0194 -5.8148 27 6 10.0692 2.3132 -4.5984 28 6 8.9067 2.3241 -3.8122 29 6 6.4534 1.4747 -2.2732 30 6 6.0089 1.2641 -3.6976 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9564 -0.8901 38 1 2.6477 3.7937 2.7605 39 1 9.9709 0.3628 -1.2697 40 1 11.9992 0.3134 -2.6090 41 1 13.2915 2.1935 -6.6189 42 1 11.3849 3.4973 -7.4643 43 1 9.2906 3.5870 -6.1742 44 1 8.0374 2.8786 -4.1336 45 1 5.7212 2.2207 -4.1337 46 1 6.8279 0.8337 -4.2739 47 1 5.1560 0.5854 -3.7155 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066827185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:46 Heat of formation + Delta-G solvation = 111.281547 kcal Electronic energy + Delta-G solvation = -32082.152214 eV Core-core repulsion = 27845.905870 eV Total energy + Delta-G solvation = -4236.246344 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.40762 -41.82737 -40.23752 -38.59602 -37.04742 -35.41891 -34.56312 -34.44303 -33.31427 -33.05130 -31.41401 -30.42043 -29.00432 -27.55534 -26.47271 -25.65456 -25.15314 -23.93928 -23.24607 -22.66192 -21.93739 -21.09293 -19.96076 -19.07285 -18.52317 -18.05162 -17.38813 -17.00644 -16.69103 -16.56016 -16.18183 -15.72757 -15.57950 -15.46258 -15.35801 -15.20663 -15.12606 -14.78188 -14.54588 -14.14984 -14.02716 -13.97046 -13.86109 -13.41978 -13.23127 -13.19491 -13.15214 -12.94845 -12.90901 -12.65903 -12.60920 -12.41275 -12.13059 -11.99254 -11.71121 -11.66861 -11.49005 -11.47203 -11.00587 -10.55793 -10.52569 -10.16562 -9.79893 -9.37857 -9.33558 -8.27402 -5.97824 -0.92208 -0.47022 0.22219 0.84036 0.88729 1.00417 1.42632 1.44567 1.57563 1.69855 2.31962 2.49676 2.83419 2.97800 3.08912 3.22742 3.32033 3.39912 3.58724 3.68519 3.75111 3.82991 3.96521 3.99046 4.08838 4.21059 4.25094 4.35866 4.43559 4.56108 4.56718 4.61726 4.67129 4.71069 4.73232 4.78783 4.88715 4.95948 5.00167 5.06808 5.10202 5.12793 5.22122 5.26258 5.33124 5.40833 5.55367 5.60919 5.66135 5.80110 6.03967 6.51060 6.85387 6.98855 7.19223 7.55743 7.95857 8.76131 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.002446 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.913468 B =11445.646495 C =12652.301153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.118 3.882 4 N -0.430 5.430 5 C -0.322 4.322 6 H 0.093 0.907 7 C 0.009 3.991 8 N -0.894 5.894 9 Si 0.973 3.027 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.528 3.472 14 O -0.613 6.613 15 C -0.090 4.090 16 N -0.187 5.187 17 N -0.108 5.108 18 N -0.318 5.318 19 C 0.113 3.887 20 C -0.094 4.094 21 C -0.072 4.072 22 C 0.115 3.885 23 N -0.503 5.503 24 C 0.138 3.862 25 C -0.161 4.161 26 C -0.054 4.054 27 C -0.103 4.103 28 C -0.075 4.075 29 C 0.114 3.886 30 C -0.078 4.078 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.271 0.729 39 H 0.137 0.863 40 H 0.161 0.839 41 H 0.195 0.805 42 H 0.180 0.820 43 H 0.170 0.830 44 H 0.155 0.845 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.600 -1.756 -17.725 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.005 4.005 4 N -0.145 5.145 5 C -0.451 4.451 6 H 0.111 0.889 7 C -0.193 4.193 8 N -0.532 5.532 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.316 3.684 14 O -0.501 6.501 15 C -0.229 4.229 16 N -0.059 5.059 17 N -0.085 5.085 18 N -0.099 5.099 19 C 0.023 3.977 20 C -0.115 4.115 21 C -0.090 4.090 22 C -0.006 4.006 23 N -0.211 5.211 24 C -0.034 4.034 25 C -0.181 4.181 26 C -0.080 4.080 27 C -0.106 4.106 28 C -0.097 4.097 29 C -0.021 4.021 30 C -0.136 4.136 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.211 0.789 42 H 0.197 0.803 43 H 0.187 0.813 44 H 0.173 0.827 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.577 -2.006 -16.328 22.655 hybrid contribution -1.014 0.498 0.418 1.205 sum 14.562 -1.508 -15.910 21.621 Atomic orbital electron populations 1.21604 0.93404 1.02371 1.01853 1.21716 0.97342 0.96553 1.00616 1.21489 0.80222 0.96761 1.02040 1.43597 1.05685 1.60632 1.04610 1.19744 1.10648 1.26698 0.87992 0.88922 1.26078 0.96281 0.93622 1.03353 1.69927 1.34512 1.14790 1.33986 0.85170 0.78305 0.78467 0.78273 1.19008 1.20810 1.19470 1.17340 0.84606 0.82054 0.84365 1.90549 1.69013 1.58930 1.31637 1.21431 0.96263 1.16152 0.89065 1.75101 0.96881 1.08454 1.25428 1.82036 1.13817 1.24968 0.87696 1.47638 1.04831 1.49595 1.07825 1.17761 0.85199 1.02390 0.92396 1.20745 0.91522 0.98281 1.00994 1.20804 0.97843 0.98279 0.92123 1.19122 0.89905 0.96345 0.95276 1.68115 1.24895 1.20758 1.07370 1.23764 0.99926 0.89125 0.90560 1.22377 0.92949 1.00097 1.02646 1.21893 1.00120 0.95003 0.90995 1.18735 0.93685 1.00722 0.97419 1.21346 0.99051 0.96729 0.92559 1.22360 0.83058 0.97352 0.99375 1.20711 1.03039 1.05213 0.84637 0.90937 0.92708 0.92511 0.93655 0.92931 0.89213 0.93856 0.91883 0.84519 0.82153 0.78865 0.80256 0.81292 0.82732 0.87625 0.88271 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.91 71.98 0.71 -3.63 16 2 C -0.12 -5.11 6.26 30.60 0.19 -4.92 16 3 C 0.12 5.82 4.96 86.38 0.43 6.24 16 4 N -0.43 -23.15 2.50 -639.23 -1.60 -24.75 16 5 C -0.32 -17.75 7.67 84.07 0.64 -17.10 16 6 H 0.09 5.26 6.31 -2.91 -0.02 5.24 16 7 C 0.01 0.51 5.00 84.94 0.43 0.93 16 8 N -0.89 -49.71 11.46 21.67 0.25 -49.46 16 9 Si 0.97 43.43 29.60 68.60 2.03 45.46 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.53 27.55 7.62 86.67 0.66 28.21 16 14 O -0.61 -31.61 14.56 -4.11 -0.06 -31.67 16 15 C -0.09 -4.31 6.71 40.81 0.27 -4.04 16 16 N -0.19 -9.29 9.25 -49.99 -0.46 -9.76 16 17 N -0.11 -4.71 13.65 37.02 0.51 -4.20 16 18 N -0.32 -11.32 3.69 -175.13 -0.65 -11.97 16 19 C 0.11 3.09 6.07 38.09 0.23 3.32 16 20 C -0.09 -2.32 9.77 22.15 0.22 -2.10 16 21 C -0.07 -1.49 9.96 22.32 0.22 -1.27 16 22 C 0.11 2.36 6.60 40.30 0.27 2.62 16 23 N -0.50 -9.27 10.34 -188.57 -1.95 -11.22 16 24 C 0.14 1.50 11.15 85.07 0.95 2.44 16 25 C -0.16 -1.23 10.03 22.14 0.22 -1.01 16 26 C -0.05 -0.61 9.89 22.51 0.22 -0.39 16 27 C -0.10 -1.88 5.74 -21.28 -0.12 -2.00 16 28 C -0.08 -1.60 8.17 22.65 0.18 -1.42 16 29 C 0.11 4.29 6.83 41.69 0.28 4.57 16 30 C -0.08 -2.15 8.24 71.24 0.59 -1.57 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 4.72 5.60 -2.39 -0.01 4.70 16 37 H 0.04 2.18 7.49 -2.38 -0.02 2.16 16 38 H 0.27 14.18 8.32 -92.71 -0.77 13.41 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 43 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.16 2.81 7.20 -2.91 -0.02 2.79 16 45 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.10 2.04 7.05 -2.39 -0.02 2.03 16 47 H 0.09 2.96 6.89 -2.38 -0.02 2.94 16 Total: -1.00 -74.98 394.94 5.68 -69.30 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.01 Total: 19.37 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.60 Total: 8.90 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.90 Total: -111.36 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.98 5.68 -69.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066827185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.581 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds