Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37675 * 125.76302 * 2 1 4 4 C 1.40743 * 126.03880 * 0.02562 * 3 2 1 5 5 N 1.31357 * 120.00093 * 180.02562 * 4 3 2 6 6 N 1.40098 * 120.00014 * 180.02562 * 5 4 3 7 7 C 1.34787 * 119.99982 * 180.02562 * 6 5 4 8 8 O 1.22140 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.39243 * 119.99867 * 179.97438 * 7 6 5 10 10 H 1.07999 * 120.00336 * 359.97438 * 9 7 6 11 11 C 1.39893 * 119.99625 * 179.97438 * 9 7 6 12 12 N 1.30792 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99776 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46956 * 60.00003 * 13 11 9 15 15 H 1.48502 * 109.46964 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47125 * 300.00282 * 13 11 9 17 17 C 1.40027 * 107.92075 * 179.97438 * 3 2 1 18 18 C 1.38215 * 107.49249 * 359.97438 * 17 3 2 19 19 C 1.36867 * 125.75977 * 179.97438 * 2 1 3 20 20 C 1.47173 * 125.82278 * 359.76399 * 19 2 1 21 21 C 1.40054 * 120.18072 * 338.54325 * 20 19 2 22 22 C 1.37790 * 119.81045 * 179.79132 * 21 20 19 23 23 C 1.38512 * 120.18512 * 0.49327 * 22 21 20 24 24 C 1.38472 * 120.36894 * 359.73758 * 23 22 21 25 25 C 1.50698 * 119.90398 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47401 * 270.02499 * 25 24 23 27 27 F 1.39901 * 109.47185 * 30.02411 * 25 24 23 28 28 F 1.39904 * 109.47021 * 150.02519 * 25 24 23 29 29 C 1.37832 * 120.18491 * 0.02715 * 24 23 22 30 30 H 1.09007 * 109.47403 * 264.18882 * 1 2 3 31 31 H 1.09004 * 109.47371 * 24.18783 * 1 2 3 32 32 H 1.09000 * 109.47407 * 144.18785 * 1 2 3 33 33 H 1.08006 * 119.99767 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00298 * 359.97438 * 6 5 4 35 35 H 0.96995 * 120.00087 * 179.97438 * 12 11 9 36 36 H 1.08007 * 126.25642 * 179.97438 * 17 3 2 37 37 H 1.08002 * 126.12209 * 180.02562 * 18 17 3 38 38 H 1.08000 * 120.09143 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.90255 * 180.20861 * 22 21 20 40 40 H 1.07994 * 119.81463 * 179.72268 * 23 22 21 41 41 H 1.08000 * 120.08891 * 179.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1171 0.0000 4 6 1.8301 2.4542 0.0005 5 7 2.7056 3.4334 -0.0001 6 7 2.2681 4.7643 0.0010 7 6 3.1665 5.7691 -0.0001 8 8 4.3621 5.5192 -0.0016 9 6 2.7316 7.0919 0.0004 10 1 1.6744 7.3128 0.0012 11 6 3.6641 8.1347 -0.0002 12 7 4.9444 7.8672 -0.0008 13 14 3.0807 9.9093 -0.0003 14 1 2.2616 10.1611 1.2125 15 1 4.2562 10.8168 -0.0016 16 1 2.2605 10.1607 -1.2124 17 6 3.6025 0.6881 0.0006 18 6 3.5941 -0.6940 0.0015 19 6 2.2648 -1.1106 0.0005 20 6 1.7999 -2.5070 0.0060 21 6 0.5098 -2.8177 0.4541 22 6 0.0809 -4.1272 0.4520 23 6 0.9251 -5.1359 0.0180 24 6 2.2037 -4.8377 -0.4221 25 6 3.1132 -5.9434 -0.8926 26 9 3.8513 -6.4327 0.1904 27 9 2.3459 -6.9776 -1.4393 28 9 3.9868 -5.4463 -1.8657 29 6 2.6468 -3.5326 -0.4310 30 1 -0.3634 -0.1041 1.0224 31 1 -0.3634 0.9375 -0.4211 32 1 -0.3634 -0.8334 -0.6013 33 1 0.7728 2.6750 0.0014 34 1 1.3186 4.9627 0.0018 35 1 5.5909 8.5902 -0.0016 36 1 4.4774 1.3215 0.0004 37 1 4.4626 -1.3360 0.0026 38 1 -0.1481 -2.0328 0.7968 39 1 -0.9148 -4.3681 0.7940 40 1 0.5842 -6.1606 0.0230 41 1 3.6445 -3.3019 -0.7742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067300006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -66.466107 kcal Electronic energy + Delta-G solvation = -30457.856740 eV Core-core repulsion = 25503.920093 eV Total energy + Delta-G solvation = -4953.936647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.46433 -47.98317 -47.92044 -41.19067 -39.31595 -37.67633 -35.33140 -33.35214 -32.90800 -32.55258 -31.95368 -30.95360 -27.94276 -26.82258 -26.37179 -26.29340 -23.72179 -22.92806 -21.68754 -20.54900 -19.81396 -19.09114 -18.79271 -18.61926 -18.46399 -17.61096 -16.81573 -16.32847 -16.01109 -15.60394 -15.56459 -15.30290 -14.84859 -14.73959 -14.66799 -14.38305 -14.21855 -14.08028 -14.03757 -13.92877 -13.53254 -13.32481 -13.30967 -13.19917 -12.84661 -12.70884 -12.52223 -12.21712 -12.06789 -11.63319 -11.47782 -11.45755 -11.36637 -10.93902 -10.69223 -10.44573 -9.80414 -9.61395 -9.59230 -9.04436 -8.67129 -8.25466 -7.80708 -6.84498 -6.44041 -5.02926 0.36687 0.66433 1.62633 2.30521 2.62943 2.65372 3.02764 3.07632 3.10276 3.30773 3.38045 3.55480 3.68893 3.73304 4.06329 4.10491 4.29355 4.38931 4.40151 4.49481 4.58207 4.72587 4.86129 4.92900 5.03769 5.09271 5.21341 5.41371 5.44355 5.55992 5.72793 5.73345 5.79876 5.85644 5.94726 6.23854 6.29660 6.43374 6.62090 7.06393 7.15060 7.20258 7.25094 7.80959 7.90868 8.58751 8.70518 9.24280 10.33601 10.60349 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.001545 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.312795 B =18122.931640 C =18948.767394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.422 5.422 3 C 0.088 3.912 4 C 0.025 3.975 5 N -0.166 5.166 6 N -0.584 5.584 7 C 0.556 3.444 8 O -0.552 6.552 9 C -0.533 4.533 10 H 0.070 0.930 11 C 0.087 3.913 12 N -0.740 5.740 13 Si 0.918 3.082 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.147 4.147 18 C -0.157 4.157 19 C 0.017 3.983 20 C 0.009 3.991 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.173 4.173 25 C 0.509 3.491 26 F -0.176 7.176 27 F -0.178 7.178 28 F -0.175 7.175 29 C -0.062 4.062 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.368 0.632 35 H 0.276 0.724 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -25.395 0.028 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.097 5.097 3 C -0.026 4.026 4 C -0.181 4.181 5 N 0.021 4.979 6 N -0.330 5.330 7 C 0.365 3.635 8 O -0.432 6.432 9 C -0.570 4.570 10 H 0.088 0.912 11 C -0.137 4.137 12 N -0.367 5.367 13 Si 0.742 3.258 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.190 1.190 17 C -0.174 4.174 18 C -0.182 4.182 19 C -0.096 4.096 20 C 0.008 3.992 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.104 4.104 24 C -0.174 4.174 25 C 0.455 3.545 26 F -0.157 7.157 27 F -0.160 7.160 28 F -0.156 7.156 29 C -0.081 4.081 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.203 0.797 35 H 0.087 0.913 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.759 -25.035 0.011 27.249 hybrid contribution -1.748 0.710 -0.052 1.887 sum -12.507 -24.324 -0.041 27.351 Atomic orbital electron populations 1.22284 0.77588 1.04887 1.03226 1.43834 1.05568 1.05004 1.55316 1.17602 0.89640 0.85061 1.10316 1.21566 0.95804 0.90438 1.10320 1.75155 1.28038 0.91146 1.03546 1.48205 1.09454 0.99766 1.75593 1.16425 0.85155 0.83085 0.78814 1.90787 1.15188 1.83162 1.54072 1.19366 0.94776 0.89795 1.53041 0.91175 1.25743 0.94282 1.01199 0.92500 1.70095 1.01553 1.33961 1.31060 0.86246 0.79022 0.80807 0.79705 1.18976 1.20167 1.18980 1.21496 0.95209 0.94332 1.06375 1.21137 0.93858 0.95366 1.07794 1.18901 0.90014 0.84660 1.16004 1.18002 0.93407 0.90029 0.97792 1.21810 0.95456 0.97294 0.98207 1.21020 0.99985 0.92082 0.99681 1.20997 0.91920 1.00503 0.96986 1.19822 0.96045 0.93174 1.08398 1.18290 0.79225 0.81707 0.75296 1.93235 1.78448 1.88992 1.55066 1.93185 1.75279 1.61223 1.86276 1.93214 1.71090 1.87315 1.63999 1.20952 1.00386 0.90005 0.96711 0.90398 0.89199 0.89454 0.88259 0.79667 0.91336 0.83100 0.84182 0.84763 0.84699 0.84797 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 9.11 59.85 0.55 1.01 16 2 N -0.42 -5.11 3.20 -116.76 -0.37 -5.49 16 3 C 0.09 1.37 6.72 -83.62 -0.56 0.81 16 4 C 0.03 0.43 10.35 -16.81 -0.17 0.26 16 5 N -0.17 -3.67 10.73 30.90 0.33 -3.34 16 6 N -0.58 -13.66 6.26 28.64 0.18 -13.48 16 7 C 0.56 15.92 7.60 -15.88 -0.12 15.80 16 8 O -0.55 -18.29 15.15 4.79 0.07 -18.22 16 9 C -0.53 -14.47 9.17 -38.59 -0.35 -14.82 16 10 H 0.07 1.68 7.84 -52.49 -0.41 1.27 16 11 C 0.09 2.32 5.49 -17.38 -0.10 2.22 16 12 N -0.74 -21.38 11.67 55.54 0.65 -20.73 16 13 Si 0.92 18.98 29.56 -169.99 -5.02 13.96 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 C -0.15 -2.39 10.50 -38.92 -0.41 -2.80 16 18 C -0.16 -2.11 10.22 -39.19 -0.40 -2.51 16 19 C 0.02 0.21 6.72 -81.60 -0.55 -0.34 16 20 C 0.01 0.09 5.83 -104.92 -0.61 -0.53 16 21 C -0.11 -0.83 8.53 -39.06 -0.33 -1.17 16 22 C -0.11 -0.69 10.03 -39.64 -0.40 -1.09 16 23 C -0.09 -0.61 9.40 -39.39 -0.37 -0.98 16 24 C -0.17 -1.50 5.45 -104.69 -0.57 -2.07 16 25 C 0.51 4.56 3.36 36.00 0.12 4.68 16 26 F -0.18 -1.69 17.30 2.25 0.04 -1.65 16 27 F -0.18 -1.57 16.45 2.25 0.04 -1.53 16 28 F -0.17 -1.71 16.45 2.25 0.04 -1.67 16 29 C -0.06 -0.58 8.92 -39.07 -0.35 -0.93 16 30 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 31 H 0.09 0.62 7.07 -51.93 -0.37 0.25 16 32 H 0.09 0.52 6.54 -51.93 -0.34 0.18 16 33 H 0.10 1.35 7.17 -52.48 -0.38 0.98 16 34 H 0.37 7.12 8.62 -182.60 -1.57 5.55 16 35 H 0.28 7.14 8.29 -40.82 -0.34 6.80 16 36 H 0.15 2.67 8.06 -52.48 -0.42 2.25 16 37 H 0.14 1.57 7.70 -52.49 -0.40 1.16 16 38 H 0.13 0.80 4.96 -52.49 -0.26 0.54 16 39 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.13 0.72 7.59 -52.49 -0.40 0.32 16 41 H 0.14 1.27 6.95 -52.49 -0.36 0.90 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -35.71 371.92 -7.95 -43.66 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.87 Total: 5.33 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.63 Total: -2.45 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.79 Total: -43.03 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.07 Total: -18.22 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.71 -7.95 -43.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067300006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.807 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds