Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37675 * 125.76302 * 2 1 4 4 C 1.40743 * 126.03880 * 0.02562 * 3 2 1 5 5 N 1.31357 * 120.00093 * 180.02562 * 4 3 2 6 6 N 1.40098 * 120.00014 * 180.02562 * 5 4 3 7 7 C 1.34787 * 119.99982 * 180.02562 * 6 5 4 8 8 O 1.22140 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.39243 * 119.99867 * 179.97438 * 7 6 5 10 10 H 1.07999 * 120.00336 * 359.97438 * 9 7 6 11 11 C 1.39893 * 119.99625 * 179.97438 * 9 7 6 12 12 N 1.30792 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99776 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46956 * 60.00003 * 13 11 9 15 15 H 1.48502 * 109.46964 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47125 * 300.00282 * 13 11 9 17 17 C 1.40027 * 107.92075 * 179.97438 * 3 2 1 18 18 C 1.38215 * 107.49249 * 359.97438 * 17 3 2 19 19 C 1.36867 * 125.75977 * 179.97438 * 2 1 3 20 20 C 1.47173 * 125.82278 * 359.76399 * 19 2 1 21 21 C 1.40054 * 120.18072 * 338.54325 * 20 19 2 22 22 C 1.37790 * 119.81045 * 179.79132 * 21 20 19 23 23 C 1.38512 * 120.18512 * 0.49327 * 22 21 20 24 24 C 1.38472 * 120.36894 * 359.73758 * 23 22 21 25 25 C 1.50698 * 119.90398 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47401 * 270.02499 * 25 24 23 27 27 F 1.39901 * 109.47185 * 30.02411 * 25 24 23 28 28 F 1.39904 * 109.47021 * 150.02519 * 25 24 23 29 29 C 1.37832 * 120.18491 * 0.02715 * 24 23 22 30 30 H 1.09007 * 109.47403 * 264.18882 * 1 2 3 31 31 H 1.09004 * 109.47371 * 24.18783 * 1 2 3 32 32 H 1.09000 * 109.47407 * 144.18785 * 1 2 3 33 33 H 1.08006 * 119.99767 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00298 * 359.97438 * 6 5 4 35 35 H 0.96995 * 120.00087 * 179.97438 * 12 11 9 36 36 H 1.08007 * 126.25642 * 179.97438 * 17 3 2 37 37 H 1.08002 * 126.12209 * 180.02562 * 18 17 3 38 38 H 1.08000 * 120.09143 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.90255 * 180.20861 * 22 21 20 40 40 H 1.07994 * 119.81463 * 179.72268 * 23 22 21 41 41 H 1.08000 * 120.08891 * 179.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2696 1.1171 0.0000 4 6 1.8301 2.4542 0.0005 5 7 2.7056 3.4334 -0.0001 6 7 2.2681 4.7643 0.0010 7 6 3.1665 5.7691 -0.0001 8 8 4.3621 5.5192 -0.0016 9 6 2.7316 7.0919 0.0004 10 1 1.6744 7.3128 0.0012 11 6 3.6641 8.1347 -0.0002 12 7 4.9444 7.8672 -0.0008 13 14 3.0807 9.9093 -0.0003 14 1 2.2616 10.1611 1.2125 15 1 4.2562 10.8168 -0.0016 16 1 2.2605 10.1607 -1.2124 17 6 3.6025 0.6881 0.0006 18 6 3.5941 -0.6940 0.0015 19 6 2.2648 -1.1106 0.0005 20 6 1.7999 -2.5070 0.0060 21 6 0.5098 -2.8177 0.4541 22 6 0.0809 -4.1272 0.4520 23 6 0.9251 -5.1359 0.0180 24 6 2.2037 -4.8377 -0.4221 25 6 3.1132 -5.9434 -0.8926 26 9 3.8513 -6.4327 0.1904 27 9 2.3459 -6.9776 -1.4393 28 9 3.9868 -5.4463 -1.8657 29 6 2.6468 -3.5326 -0.4310 30 1 -0.3634 -0.1041 1.0224 31 1 -0.3634 0.9375 -0.4211 32 1 -0.3634 -0.8334 -0.6013 33 1 0.7728 2.6750 0.0014 34 1 1.3186 4.9627 0.0018 35 1 5.5909 8.5902 -0.0016 36 1 4.4774 1.3215 0.0004 37 1 4.4626 -1.3360 0.0026 38 1 -0.1481 -2.0328 0.7968 39 1 -0.9148 -4.3681 0.7940 40 1 0.5842 -6.1606 0.0230 41 1 3.6445 -3.3019 -0.7742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067300006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -89.674698 kcal Electronic energy + Delta-G solvation = -30458.863140 eV Core-core repulsion = 25503.920093 eV Total energy + Delta-G solvation = -4954.943047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.109 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -51.18568 -48.70404 -48.65481 -42.20574 -40.03242 -39.57908 -37.02307 -34.73391 -34.22962 -33.76503 -32.82109 -32.27142 -29.51444 -27.94380 -27.63749 -27.00404 -24.82857 -23.74140 -22.64783 -22.17303 -20.94720 -20.40116 -19.51584 -19.39463 -19.34826 -19.14964 -17.78287 -17.54281 -17.40590 -17.17939 -16.42488 -16.11713 -15.87626 -15.57136 -15.49645 -15.37125 -15.13913 -15.11057 -14.92434 -14.81336 -14.72011 -14.65646 -14.44068 -14.07817 -13.85277 -13.70619 -13.54782 -13.31309 -13.26478 -12.98568 -12.92335 -12.72154 -12.55603 -12.32210 -12.08453 -12.06578 -11.01460 -10.99449 -10.66525 -10.24314 -9.98533 -9.74288 -9.70499 -8.42354 -8.20389 -7.11818 -0.38989 -0.01103 0.48177 1.38774 1.42439 1.52140 1.57530 1.67026 1.68806 2.16379 2.19662 2.44858 2.47704 2.58857 2.69815 2.98942 3.40038 3.50944 3.66853 3.75988 3.82612 3.88519 3.99845 4.10327 4.14185 4.34601 4.37299 4.52930 4.58123 4.63449 4.71883 4.81345 4.90801 5.06310 5.15296 5.16963 5.25463 5.33066 5.39844 5.70926 5.81939 5.89073 6.02055 6.02782 6.26978 6.66488 6.94876 7.45954 8.40839 8.59983 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.001545 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.312795 B =18122.931640 C =18948.767394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.407 5.407 3 C 0.037 3.963 4 C 0.086 3.914 5 N -0.254 5.254 6 N -0.591 5.591 7 C 0.543 3.457 8 O -0.619 6.619 9 C -0.558 4.558 10 H 0.097 0.903 11 C 0.028 3.972 12 N -0.798 5.798 13 Si 1.011 2.989 14 H -0.250 1.250 15 H -0.272 1.272 16 H -0.250 1.250 17 C -0.160 4.160 18 C -0.185 4.185 19 C 0.057 3.943 20 C -0.020 4.020 21 C -0.096 4.096 22 C -0.102 4.102 23 C -0.075 4.075 24 C -0.185 4.185 25 C 0.510 3.490 26 F -0.181 7.181 27 F -0.176 7.176 28 F -0.183 7.183 29 C -0.066 4.066 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.384 0.616 35 H 0.281 0.719 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.156 0.844 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 -27.516 0.452 32.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.081 5.081 3 C -0.077 4.077 4 C -0.121 4.121 5 N -0.064 5.064 6 N -0.337 5.337 7 C 0.353 3.647 8 O -0.505 6.505 9 C -0.594 4.594 10 H 0.115 0.885 11 C -0.191 4.191 12 N -0.426 5.426 13 Si 0.829 3.171 14 H -0.173 1.173 15 H -0.196 1.196 16 H -0.174 1.174 17 C -0.188 4.188 18 C -0.209 4.209 19 C -0.060 4.060 20 C -0.021 4.021 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.187 4.187 25 C 0.456 3.544 26 F -0.163 7.163 27 F -0.157 7.157 28 F -0.164 7.164 29 C -0.085 4.085 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.222 0.778 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.173 0.827 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.481 -27.178 0.435 31.281 hybrid contribution -0.482 0.691 -0.186 0.863 sum -15.964 -26.487 0.248 30.927 Atomic orbital electron populations 1.22794 0.74344 1.06675 1.05629 1.44058 1.07337 1.03568 1.53129 1.17392 0.90023 0.85555 1.14720 1.22066 0.97187 0.90013 1.02881 1.75240 1.29917 0.90955 1.10259 1.47305 1.09224 1.00114 1.77046 1.16824 0.84897 0.84765 0.78199 1.90717 1.17891 1.84650 1.57214 1.19945 0.96405 0.89916 1.53129 0.88484 1.27161 0.93960 1.07123 0.90845 1.70280 1.03645 1.36166 1.32508 0.84874 0.78676 0.72906 0.80650 1.17338 1.19637 1.17382 1.21467 0.95198 0.95588 1.06512 1.21307 0.95629 0.94248 1.09707 1.19289 0.89491 0.85906 1.11340 1.17961 0.95048 0.88337 1.00801 1.22113 0.94233 0.98748 0.96369 1.21437 1.01298 0.90965 0.98289 1.21409 0.90990 1.02062 0.94821 1.19852 0.96872 0.92498 1.09447 1.18362 0.79152 0.81899 0.75004 1.93225 1.78663 1.89099 1.55286 1.93187 1.75124 1.61186 1.86244 1.93199 1.71459 1.87429 1.64348 1.20983 1.00338 0.90517 0.96632 0.87676 0.88202 0.86980 0.84450 0.77817 0.90833 0.86295 0.82868 0.82539 0.80951 0.82673 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.11 127.77 1.16 1.64 16 2 N -0.41 -8.96 3.20 -523.33 -1.67 -10.64 16 3 C 0.04 1.17 6.72 39.27 0.26 1.43 16 4 C 0.09 2.93 10.35 85.38 0.88 3.81 16 5 N -0.25 -11.94 10.73 -56.16 -0.60 -12.54 16 6 N -0.59 -29.13 6.26 -181.34 -1.13 -30.26 16 7 C 0.54 33.07 7.60 84.48 0.64 33.72 16 8 O -0.62 -44.31 15.15 -5.77 -0.09 -44.39 16 9 C -0.56 -31.32 9.17 22.91 0.21 -31.11 16 10 H 0.10 4.68 7.84 -2.91 -0.02 4.66 16 11 C 0.03 1.53 5.49 85.25 0.47 2.00 16 12 N -0.80 -48.65 11.67 21.81 0.25 -48.40 16 13 Si 1.01 39.17 29.56 68.60 2.03 41.20 16 14 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 15 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 17 C -0.16 -5.55 10.50 22.70 0.24 -5.31 16 18 C -0.18 -5.10 10.22 22.52 0.23 -4.87 16 19 C 0.06 1.28 6.72 40.96 0.28 1.55 16 20 C -0.02 -0.34 5.83 -20.06 -0.12 -0.46 16 21 C -0.10 -0.99 8.53 22.60 0.19 -0.79 16 22 C -0.10 -0.71 10.03 22.23 0.22 -0.49 16 23 C -0.07 -0.73 9.40 22.39 0.21 -0.52 16 24 C -0.19 -2.72 5.45 -19.91 -0.11 -2.83 16 25 C 0.51 8.28 3.36 71.24 0.24 8.52 16 26 F -0.18 -3.23 17.30 44.97 0.78 -2.45 16 27 F -0.18 -2.71 16.45 44.97 0.74 -1.97 16 28 F -0.18 -3.43 16.45 44.97 0.74 -2.69 16 29 C -0.07 -1.11 8.92 22.60 0.20 -0.91 16 30 H 0.11 0.65 7.56 -2.38 -0.02 0.63 16 31 H 0.10 0.94 7.07 -2.38 -0.02 0.92 16 32 H 0.11 0.71 6.54 -2.39 -0.02 0.69 16 33 H 0.14 3.45 7.17 -2.91 -0.02 3.43 16 34 H 0.38 15.31 8.62 -213.32 -1.84 13.47 16 35 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 36 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.15 3.60 7.70 -2.91 -0.02 3.58 16 38 H 0.16 0.88 4.96 -2.91 -0.01 0.87 16 39 H 0.17 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.16 0.89 7.59 -2.91 -0.02 0.87 16 41 H 0.14 2.38 6.95 -2.91 -0.02 2.36 16 Total: -1.00 -87.50 371.92 5.55 -81.95 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.71 Total: 24.81 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.22 Total: 5.39 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -3.16 Total: -101.85 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.09 Total: -44.39 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.26 Total: -7.12 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -87.50 5.55 -81.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067300006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.728 kcal (2) G-P(sol) polarization free energy of solvation -87.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds