Wall clock time and date at job start Tue Mar 31 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35954 * 116.99898 * 2 1 4 4 C 1.38737 * 119.98999 * 180.02562 * 3 2 1 5 5 C 1.38062 * 120.01711 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.98683 * 359.97438 * 5 4 3 7 7 N 1.40177 * 120.01406 * 179.97438 * 6 5 4 8 8 C 1.35323 * 124.71484 * 65.02856 * 7 6 5 9 9 C 1.50698 * 125.23834 * 359.93806 * 8 7 6 10 10 C 1.37920 * 109.52762 * 179.97438 * 8 7 6 11 11 C 1.41666 * 126.86962 * 179.97438 * 10 8 7 12 12 C 1.50700 * 120.00070 * 274.99345 * 11 10 8 13 13 O 1.21413 * 119.99975 * 94.99039 * 11 10 8 14 14 C 1.47662 * 106.26470 * 359.97438 * 10 8 7 15 15 C 1.39121 * 133.82691 * 180.02562 * 14 10 8 16 16 C 1.38453 * 119.62830 * 179.97438 * 15 14 10 17 17 O 1.35778 * 119.94157 * 179.72071 * 16 15 14 18 18 C 1.34818 * 117.00454 * 354.24958 * 17 16 15 19 19 H 1.07999 * 119.99714 * 354.61559 * 18 17 16 20 20 C 1.38638 * 120.00211 * 174.61211 * 18 17 16 21 21 N 1.31560 * 120.00032 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99798 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47199 * 90.00459 * 22 20 18 24 24 H 1.48500 * 109.46820 * 210.00021 * 22 20 18 25 25 H 1.48495 * 109.47246 * 329.99748 * 22 20 18 26 26 C 1.39321 * 120.11348 * 0.02562 * 16 15 14 27 27 C 1.37653 * 120.56193 * 0.02562 * 26 16 15 28 28 C 1.38275 * 124.70839 * 244.99613 * 7 6 5 29 29 C 1.38859 * 119.97324 * 0.25539 * 6 5 4 30 30 C 1.38071 * 119.97875 * 359.46829 * 29 6 5 31 31 H 1.08993 * 109.47035 * 60.00009 * 1 2 3 32 32 H 1.08997 * 109.46520 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46860 * 299.99560 * 1 2 3 34 34 H 1.08005 * 119.98823 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.01019 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47211 * 270.02399 * 9 8 7 37 37 H 1.09008 * 109.47042 * 30.01816 * 9 8 7 38 38 H 1.08989 * 109.47516 * 150.01956 * 9 8 7 39 39 H 1.08999 * 109.46888 * 4.99582 * 12 11 10 40 40 H 1.08997 * 109.47151 * 124.99967 * 12 11 10 41 41 H 1.08998 * 109.47069 * 244.99715 * 12 11 10 42 42 H 1.08003 * 120.18670 * 359.97438 * 15 14 10 43 43 H 0.97005 * 120.00764 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.71919 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.97536 * 179.97438 * 27 26 16 46 46 H 1.07992 * 120.01121 * 179.72441 * 29 6 5 47 47 H 1.08003 * 119.99287 * 180.25290 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0590 2.5136 0.0000 6 6 3.3030 3.6783 0.0005 7 7 3.9394 4.9273 0.0016 8 6 4.7080 5.4015 -1.0062 9 6 5.0076 4.6703 -2.2893 10 6 5.1758 6.6567 -0.6778 11 6 6.0112 7.4857 -1.4665 12 6 7.5074 7.3122 -1.4175 13 8 5.5217 8.3358 -2.1819 14 6 4.6318 6.9639 0.6601 15 6 4.7389 8.0551 1.5164 16 6 4.0876 8.0332 2.7380 17 8 4.1925 9.0923 3.5810 18 6 5.0387 10.0787 3.2224 19 1 5.6600 9.9652 2.3463 20 6 5.1114 11.2387 3.9783 21 7 5.9368 12.2014 3.6281 22 14 4.0372 11.4346 5.4940 23 1 4.7577 10.9110 6.6823 24 1 3.7260 12.8722 5.6975 25 1 2.7742 10.6764 5.3070 26 6 3.3300 6.9235 3.1063 27 6 3.2205 5.8400 2.2644 28 6 3.8684 5.8463 1.0324 29 6 1.9164 3.6053 0.0059 30 6 1.2903 2.3748 -0.0004 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0196 0.3777 -0.0005 35 1 5.1376 2.5698 -0.0008 36 1 5.9097 4.0713 -2.1642 37 1 4.1706 4.0184 -2.5399 38 1 5.1590 5.3919 -3.0919 39 1 7.7531 6.4516 -0.7954 40 1 7.8877 7.1519 -2.4263 41 1 7.9633 8.2077 -0.9953 42 1 5.3269 8.9146 1.2299 43 1 5.9880 13.0129 4.1570 44 1 2.8249 6.9130 4.0609 45 1 2.6311 4.9846 2.5596 46 1 1.3278 4.5108 0.0108 47 1 0.2118 2.3177 -0.0004 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068755377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:14 Heat of formation + Delta-G solvation = -2.255219 kcal Electronic energy + Delta-G solvation = -31985.561974 eV Core-core repulsion = 27679.806804 eV Total energy + Delta-G solvation = -4305.755170 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 5.89 seconds Orbital eigenvalues (eV) -41.61101 -40.31649 -38.75540 -38.62138 -37.47216 -35.45418 -32.93192 -32.33109 -31.56033 -30.83063 -30.09148 -29.70054 -28.19874 -27.20003 -26.77307 -24.93129 -23.36721 -23.12463 -21.74633 -21.39397 -20.44479 -18.62872 -18.52179 -18.05068 -17.38468 -16.81260 -16.66613 -16.15869 -15.79420 -15.23399 -15.18656 -14.86040 -14.53909 -14.46599 -14.24343 -14.03945 -13.86359 -13.75281 -13.60519 -13.37422 -13.30074 -13.02668 -12.81668 -12.71150 -12.38669 -12.33575 -12.19513 -12.11415 -12.07635 -11.77445 -11.52178 -11.44653 -11.29860 -10.97209 -10.71365 -10.26219 -10.18397 -9.56722 -9.45921 -9.33081 -9.18579 -8.79871 -8.49436 -7.44337 -6.91954 -6.36979 -4.02731 0.82386 0.91214 1.50257 2.17295 2.29026 2.70807 2.76749 2.91273 3.25344 3.27560 3.28443 3.42290 4.26769 4.36937 4.42949 4.46639 4.56663 4.65270 4.67834 4.71938 4.83699 4.86594 4.92269 5.01926 5.07148 5.12807 5.19118 5.28870 5.34636 5.38421 5.51441 5.55747 5.59494 5.64456 5.71629 5.77695 5.88349 5.94059 6.04955 6.06607 6.13112 6.16568 6.20129 6.42948 6.65686 6.75562 6.91292 7.00171 7.18165 7.28074 7.55014 7.65182 7.83565 7.84658 8.06561 8.98047 9.59829 10.70763 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.002778 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.857699 B =10075.240164 C =12272.170440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.139 4.139 5 C -0.073 4.073 6 C 0.093 3.907 7 N -0.420 5.420 8 C 0.126 3.874 9 C -0.096 4.096 10 C -0.269 4.269 11 C 0.444 3.556 12 C -0.198 4.198 13 O -0.459 6.459 14 C -0.010 4.010 15 C -0.200 4.200 16 C 0.147 3.853 17 O -0.216 6.216 18 C -0.385 4.385 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.148 4.148 27 C -0.083 4.083 28 C 0.024 3.976 29 C -0.069 4.069 30 C -0.195 4.195 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.279 0.721 44 H 0.126 0.874 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -24.654 -9.403 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.159 4.159 5 C -0.092 4.092 6 C 0.003 3.997 7 N -0.101 5.101 8 C 0.016 3.984 9 C -0.153 4.153 10 C -0.278 4.278 11 C 0.321 3.679 12 C -0.255 4.255 13 O -0.333 6.333 14 C -0.013 4.013 15 C -0.220 4.220 16 C 0.095 3.905 17 O -0.122 6.122 18 C -0.460 4.460 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.167 4.167 27 C -0.103 4.103 28 C -0.076 4.076 29 C -0.089 4.089 30 C -0.215 4.215 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.504 -24.359 -9.478 26.935 hybrid contribution -0.569 0.399 0.729 1.007 sum -7.073 -23.959 -8.749 26.469 Atomic orbital electron populations 1.23102 0.78092 1.04149 1.01615 1.86090 1.21633 1.26685 1.88519 1.19087 0.92351 0.84240 0.95929 1.20285 0.91340 0.98178 1.06052 1.21062 1.00376 0.90299 0.97455 1.17542 0.91224 0.84070 1.06851 1.40523 1.42358 1.12532 1.14645 1.20382 0.94792 0.92758 0.90458 1.20532 1.02530 1.00229 0.92015 1.19514 1.12008 0.97363 0.98908 1.20337 0.91009 0.79641 0.76946 1.22269 0.94655 1.04809 1.03813 1.90570 1.78829 1.29843 1.34060 1.18322 0.97433 0.93536 0.92023 1.20431 1.07859 0.99232 0.94524 1.18781 0.94366 0.88349 0.88981 1.83579 1.58750 1.26705 1.43140 1.20754 1.16458 0.94453 1.14381 0.87684 1.24462 0.96988 0.93736 0.98863 1.69654 1.36026 1.06534 1.39458 0.86183 0.81490 0.77319 0.81909 1.19903 1.20892 1.18362 1.19991 1.03828 0.92225 1.00681 1.19566 1.00998 0.98387 0.91362 1.17893 1.07191 0.90580 0.91887 1.21090 0.93125 0.98091 0.96579 1.21135 1.00370 0.91505 1.08455 0.92468 0.88076 0.92387 0.84395 0.84558 0.90033 0.90953 0.89902 0.90159 0.89591 0.88682 0.84780 0.91091 0.85609 0.86728 0.84854 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.66 10.50 -19.60 -0.21 -2.86 16 3 C 0.13 1.18 6.69 -39.21 -0.26 0.92 16 4 C -0.14 -1.24 9.98 -39.46 -0.39 -1.63 16 5 C -0.07 -0.72 9.55 -39.42 -0.38 -1.10 16 6 C 0.09 1.12 4.89 -83.58 -0.41 0.71 16 7 N -0.42 -6.22 2.78 -53.74 -0.15 -6.37 16 8 C 0.13 1.83 6.81 -81.17 -0.55 1.28 16 9 C -0.10 -0.97 9.53 36.00 0.34 -0.63 16 10 C -0.27 -4.71 5.63 -104.86 -0.59 -5.30 16 11 C 0.44 7.58 6.41 -33.00 -0.21 7.37 16 12 C -0.20 -2.53 10.30 36.01 0.37 -2.16 16 13 O -0.46 -9.35 17.84 5.44 0.10 -9.25 16 14 C -0.01 -0.19 6.33 -104.92 -0.66 -0.86 16 15 C -0.20 -4.59 9.16 -39.17 -0.36 -4.95 16 16 C 0.15 3.43 6.65 -39.10 -0.26 3.17 16 17 O -0.22 -5.72 8.58 0.00 0.00 -5.72 16 18 C -0.38 -11.00 9.90 30.88 0.31 -10.69 16 19 H 0.11 3.11 5.52 -52.49 -0.29 2.82 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.76 13.96 55.48 0.77 -24.98 16 22 Si 0.91 21.81 28.62 -169.99 -4.86 16.94 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.15 -2.86 9.96 -39.39 -0.39 -3.25 16 27 C -0.08 -1.42 9.92 -39.44 -0.39 -1.81 16 28 C 0.02 0.43 6.67 -83.80 -0.56 -0.13 16 29 C -0.07 -0.76 9.88 -39.41 -0.39 -1.14 16 30 C -0.20 -1.74 9.03 -39.46 -0.36 -2.09 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 7.71 -51.92 -0.40 0.27 16 38 H 0.08 0.83 7.88 -51.94 -0.41 0.42 16 39 H 0.08 0.91 7.97 -51.93 -0.41 0.49 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.13 3.33 5.71 -52.48 -0.30 3.03 16 43 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.14 0.89 6.29 -52.48 -0.33 0.56 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -34.10 403.76 -8.40 -42.49 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.88 Total: 3.17 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -4.25 Total: -19.50 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.63 Total: -31.35 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.11 Total: -17.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.10 -8.40 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068755377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.238 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.89 seconds