Wall clock time and date at job start Tue Mar 31 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00388 * 2 1 4 4 H 1.48493 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47220 * 300.00392 * 3 2 1 6 6 H 1.48509 * 109.47107 * 60.00154 * 3 2 1 7 7 C 1.39908 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99702 * 175.55598 * 7 2 1 9 9 C 1.41146 * 120.00022 * 355.55861 * 7 2 1 10 10 C 1.40868 * 120.16154 * 214.77717 * 9 7 2 11 11 C 1.36379 * 119.82856 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16942 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83516 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99819 * 35.29140 * 13 12 11 15 15 O 1.21287 * 119.99782 * 355.71075 * 14 13 12 16 16 C 1.50698 * 119.99926 * 175.70230 * 14 13 12 17 17 N 1.46502 * 109.46950 * 179.97438 * 16 14 13 18 18 C 1.40176 * 120.61145 * 90.00585 * 17 16 14 19 19 C 1.38724 * 120.47527 * 49.32626 * 18 17 16 20 20 C 1.38181 * 119.73033 * 178.89794 * 19 18 17 21 21 C 1.38304 * 120.04857 * 0.49284 * 20 19 18 22 22 C 1.38284 * 120.25212 * 359.74884 * 21 20 19 23 23 C 1.38144 * 119.95581 * 0.28142 * 22 21 20 24 24 C 1.50490 * 120.32154 * 178.55395 * 23 22 21 25 25 C 1.52989 * 110.28688 * 104.06946 * 24 23 22 26 26 C 1.52886 * 109.50930 * 43.12340 * 25 24 23 27 27 C 1.34583 * 120.61969 * 269.98428 * 17 16 14 28 28 O 1.21292 * 119.91146 * 4.63992 * 27 17 16 29 29 C 1.39482 * 120.33269 * 0.25475 * 12 11 10 30 30 C 1.36376 * 120.16660 * 359.44196 * 29 12 11 31 31 H 0.97006 * 119.99473 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08818 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.91492 * 180.02562 * 11 10 9 34 34 H 0.96992 * 119.99772 * 215.28668 * 13 12 11 35 35 H 1.09001 * 109.46831 * 60.00560 * 16 14 13 36 36 H 1.08998 * 109.47398 * 300.00368 * 16 14 13 37 37 H 1.08000 * 120.13187 * 359.15276 * 19 18 17 38 38 H 1.07998 * 119.97304 * 180.25895 * 20 19 18 39 39 H 1.08000 * 119.87112 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.02787 * 180.30483 * 22 21 20 41 41 H 1.08998 * 109.33941 * 224.31758 * 24 23 22 42 42 H 1.09001 * 109.33377 * 343.82267 * 24 23 22 43 43 H 1.08996 * 109.45786 * 283.12010 * 25 24 23 44 44 H 1.08996 * 109.46765 * 163.13477 * 25 24 23 45 45 H 1.09004 * 109.25862 * 283.01675 * 26 25 24 46 46 H 1.09006 * 109.22812 * 163.56129 * 26 25 24 47 47 H 1.08000 * 119.91629 * 179.72399 * 29 12 11 48 48 H 1.08004 * 120.08700 * 180.25569 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8842 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2131 -0.0730 9 6 1.3056 -2.4322 0.0936 10 6 1.8648 -3.5187 0.7944 11 6 1.1802 -4.6950 0.8807 12 6 -0.0704 -4.8241 0.2767 13 7 -0.7630 -6.0285 0.3686 14 6 -0.6813 -6.7688 1.4919 15 8 0.0560 -6.4259 2.3918 16 6 -1.5060 -8.0225 1.6297 17 7 -1.2396 -8.6417 2.9304 18 6 -2.0056 -8.3005 4.0537 19 6 -3.3912 -8.2990 3.9864 20 6 -4.1315 -7.9823 5.1094 21 6 -3.4916 -7.6584 6.2920 22 6 -2.1104 -7.6548 6.3585 23 6 -1.3651 -7.9700 5.2389 24 6 0.1385 -7.9370 5.2931 25 6 0.6980 -9.3591 5.3639 26 6 -0.0572 -10.2545 4.3813 27 6 -0.2553 -9.5490 3.0690 28 8 0.4741 -9.7979 2.1324 29 6 -0.6280 -3.7547 -0.4240 30 6 0.0419 -2.5702 -0.5135 31 1 -0.4850 0.8401 0.0004 32 1 2.8332 -3.4204 1.2623 33 1 1.6075 -5.5287 1.4180 34 1 -1.3044 -6.3346 -0.3757 35 1 -1.2422 -8.7201 0.8348 36 1 -2.5641 -7.7713 1.5563 37 1 -3.8893 -8.5484 3.0612 38 1 -5.2104 -7.9840 5.0625 39 1 -4.0731 -7.4118 7.1681 40 1 -1.6146 -7.4061 7.2851 41 1 0.5211 -7.4428 4.4001 42 1 0.4557 -7.3801 6.1748 43 1 0.5770 -9.7470 6.3753 44 1 1.7564 -9.3464 5.1039 45 1 -1.0296 -10.5102 4.8023 46 1 0.5142 -11.1679 4.2158 47 1 -1.5949 -3.8635 -0.8928 48 1 -0.3930 -1.7417 -1.0529 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069370276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:29 Heat of formation + Delta-G solvation = -14.862718 kcal Electronic energy + Delta-G solvation = -32423.213081 eV Core-core repulsion = 28214.629870 eV Total energy + Delta-G solvation = -4208.583210 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -41.44660 -39.50043 -38.73186 -37.25237 -35.51907 -35.30467 -34.38268 -32.92725 -31.20737 -30.28947 -29.61633 -29.34021 -28.35537 -26.63317 -24.81641 -23.84318 -22.75324 -21.66127 -20.89047 -20.84966 -19.92208 -19.50104 -17.51046 -17.27668 -17.22215 -16.92409 -16.26403 -16.00686 -15.75243 -15.14964 -15.02053 -14.66375 -14.50624 -14.33582 -14.07463 -13.86447 -13.53870 -13.33428 -13.18485 -13.09405 -12.84155 -12.65538 -12.22638 -12.05588 -11.85293 -11.70426 -11.67859 -11.63546 -11.36296 -11.16193 -11.12602 -10.94834 -10.91209 -10.72808 -10.33575 -10.04885 -9.80023 -9.47444 -9.41608 -9.14480 -8.95005 -8.85629 -8.26133 -7.53793 -6.85556 -6.61470 -4.33691 1.03920 1.16131 2.36364 2.54982 2.66686 3.00390 3.09320 3.10581 3.15772 3.33790 3.49699 3.79767 3.98729 4.27040 4.49022 4.62330 4.69143 4.71174 4.79242 4.88214 5.00825 5.02725 5.09316 5.13392 5.24059 5.27184 5.41367 5.46771 5.56112 5.66165 5.70678 5.74663 5.87047 5.99514 6.15672 6.19424 6.25581 6.31636 6.45604 6.46808 6.69728 6.76569 6.92999 7.07640 7.19832 7.21355 7.30446 7.64858 7.73995 7.86934 7.94308 8.07471 8.25994 8.32382 8.62970 8.74232 8.93574 9.00709 10.29648 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.002394 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.680030 B =11694.957451 C =12088.133056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.006 3.994 13 N -0.650 5.650 14 C 0.485 3.515 15 O -0.517 6.517 16 C 0.095 3.905 17 N -0.544 5.544 18 C 0.146 3.854 19 C -0.131 4.131 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.100 4.100 23 C -0.078 4.078 24 C -0.102 4.102 25 C -0.102 4.102 26 C -0.138 4.138 27 C 0.529 3.471 28 O -0.527 6.527 29 C -0.121 4.121 30 C -0.141 4.141 31 H 0.277 0.723 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.395 0.605 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -17.501 9.900 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.087 4.087 13 N -0.293 5.293 14 C 0.270 3.730 15 O -0.392 6.392 16 C -0.031 4.031 17 N -0.270 5.270 18 C 0.054 3.946 19 C -0.151 4.151 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.118 4.118 23 C -0.080 4.080 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.178 4.178 27 C 0.318 3.682 28 O -0.402 6.402 29 C -0.141 4.141 30 C -0.161 4.161 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.229 0.771 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.117 0.883 47 H 0.109 0.891 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.790 -17.268 9.996 21.803 hybrid contribution -0.211 0.855 -0.326 0.939 sum -9.001 -16.412 9.671 21.069 Atomic orbital electron populations 1.69778 1.07273 1.28546 1.38366 1.25880 0.94944 1.01160 0.92576 0.86151 0.80613 0.80858 0.78376 1.18591 1.20000 1.19996 1.19534 0.94760 0.90214 1.44635 0.90590 1.17725 0.92285 0.92006 0.88236 1.20808 1.01179 0.94980 1.05564 1.20390 0.92731 0.97777 0.99460 1.17253 0.94180 0.85717 1.11514 1.42920 1.48977 1.21405 1.16036 1.20833 0.84042 0.85434 0.82715 1.90635 1.38417 1.70280 1.39905 1.21436 1.00651 0.94609 0.86417 1.45085 1.33712 1.40210 1.07985 1.17539 0.90189 1.00219 0.86696 1.20989 0.91938 1.02651 0.99563 1.20979 0.99802 0.99349 0.92480 1.21153 0.94508 1.00648 0.98123 1.20974 0.93771 0.99458 0.97633 1.19791 0.96255 0.98867 0.93058 1.20778 0.90585 0.97162 1.05390 1.21457 1.00043 0.93919 0.98611 1.21690 1.03225 0.99873 0.92990 1.20626 0.78521 0.78460 0.90549 1.90732 1.42857 1.64594 1.42009 1.20308 0.98365 0.93142 1.02274 1.21187 0.97296 0.95537 1.02109 0.91243 0.88675 0.87569 0.77128 0.86789 0.87395 0.85601 0.85608 0.85838 0.85525 0.88068 0.90386 0.90495 0.90560 0.89430 0.88276 0.89108 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.26 10.60 55.55 0.59 -20.67 16 2 C 0.07 1.77 5.42 -17.33 -0.09 1.67 16 3 Si 0.91 19.19 29.56 -169.99 -5.03 14.17 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.44 9.02 -37.85 -0.34 -12.79 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.08 -2.06 8.61 -39.79 -0.34 -2.40 16 12 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 13 N -0.65 -11.47 5.30 -9.74 -0.05 -11.52 16 14 C 0.49 8.56 7.73 -10.99 -0.08 8.47 16 15 O -0.52 -11.08 12.12 5.55 0.07 -11.01 16 16 C 0.09 1.21 5.82 -5.19 -0.03 1.18 16 17 N -0.54 -7.19 1.82 -114.96 -0.21 -7.40 16 18 C 0.15 1.75 4.89 -83.69 -0.41 1.34 16 19 C -0.13 -1.30 9.34 -39.42 -0.37 -1.67 16 20 C -0.11 -0.93 10.04 -39.58 -0.40 -1.33 16 21 C -0.13 -1.10 10.04 -39.54 -0.40 -1.50 16 22 C -0.10 -0.98 9.68 -39.60 -0.38 -1.37 16 23 C -0.08 -0.92 4.67 -104.58 -0.49 -1.41 16 24 C -0.10 -1.25 5.31 -27.99 -0.15 -1.40 16 25 C -0.10 -1.01 6.13 -26.80 -0.16 -1.17 16 26 C -0.14 -1.43 5.38 -28.13 -0.15 -1.58 16 27 C 0.53 7.47 6.24 -11.26 -0.07 7.40 16 28 O -0.53 -9.30 16.76 5.55 0.09 -9.20 16 29 C -0.12 -2.77 9.90 -39.79 -0.39 -3.16 16 30 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 34 H 0.40 5.35 8.82 -40.82 -0.36 4.99 16 35 H 0.11 1.33 7.53 -51.93 -0.39 0.94 16 36 H 0.11 1.03 6.98 -51.93 -0.36 0.67 16 37 H 0.13 1.00 7.43 -52.49 -0.39 0.61 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.00 8.02 -52.49 -0.42 0.58 16 41 H 0.10 1.67 5.76 -51.93 -0.30 1.37 16 42 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.78 7.22 -51.93 -0.38 0.40 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 48 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -33.70 390.80 -10.92 -44.62 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.17 Total: 12.81 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -6.11 Total: -17.68 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.33 Total: -39.60 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.70 -10.92 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069370276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.759 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.84 seconds