Wall clock time and date at job start Tue Mar 31 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00388 * 2 1 4 4 H 1.48493 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47220 * 300.00392 * 3 2 1 6 6 H 1.48509 * 109.47107 * 60.00154 * 3 2 1 7 7 C 1.39908 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99702 * 175.55598 * 7 2 1 9 9 C 1.41146 * 120.00022 * 355.55861 * 7 2 1 10 10 C 1.40868 * 120.16154 * 214.77717 * 9 7 2 11 11 C 1.36379 * 119.82856 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16942 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83516 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99819 * 35.29140 * 13 12 11 15 15 O 1.21287 * 119.99782 * 355.71075 * 14 13 12 16 16 C 1.50698 * 119.99926 * 175.70230 * 14 13 12 17 17 N 1.46502 * 109.46950 * 179.97438 * 16 14 13 18 18 C 1.40176 * 120.61145 * 90.00585 * 17 16 14 19 19 C 1.38724 * 120.47527 * 49.32626 * 18 17 16 20 20 C 1.38181 * 119.73033 * 178.89794 * 19 18 17 21 21 C 1.38304 * 120.04857 * 0.49284 * 20 19 18 22 22 C 1.38284 * 120.25212 * 359.74884 * 21 20 19 23 23 C 1.38144 * 119.95581 * 0.28142 * 22 21 20 24 24 C 1.50490 * 120.32154 * 178.55395 * 23 22 21 25 25 C 1.52989 * 110.28688 * 104.06946 * 24 23 22 26 26 C 1.52886 * 109.50930 * 43.12340 * 25 24 23 27 27 C 1.34583 * 120.61969 * 269.98428 * 17 16 14 28 28 O 1.21292 * 119.91146 * 4.63992 * 27 17 16 29 29 C 1.39482 * 120.33269 * 0.25475 * 12 11 10 30 30 C 1.36376 * 120.16660 * 359.44196 * 29 12 11 31 31 H 0.97006 * 119.99473 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08818 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.91492 * 180.02562 * 11 10 9 34 34 H 0.96992 * 119.99772 * 215.28668 * 13 12 11 35 35 H 1.09001 * 109.46831 * 60.00560 * 16 14 13 36 36 H 1.08998 * 109.47398 * 300.00368 * 16 14 13 37 37 H 1.08000 * 120.13187 * 359.15276 * 19 18 17 38 38 H 1.07998 * 119.97304 * 180.25895 * 20 19 18 39 39 H 1.08000 * 119.87112 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.02787 * 180.30483 * 22 21 20 41 41 H 1.08998 * 109.33941 * 224.31758 * 24 23 22 42 42 H 1.09001 * 109.33377 * 343.82267 * 24 23 22 43 43 H 1.08996 * 109.45786 * 283.12010 * 25 24 23 44 44 H 1.08996 * 109.46765 * 163.13477 * 25 24 23 45 45 H 1.09004 * 109.25862 * 283.01675 * 26 25 24 46 46 H 1.09006 * 109.22812 * 163.56129 * 26 25 24 47 47 H 1.08000 * 119.91629 * 179.72399 * 29 12 11 48 48 H 1.08004 * 120.08700 * 180.25569 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8842 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2131 -0.0730 9 6 1.3056 -2.4322 0.0936 10 6 1.8648 -3.5187 0.7944 11 6 1.1802 -4.6950 0.8807 12 6 -0.0704 -4.8241 0.2767 13 7 -0.7630 -6.0285 0.3686 14 6 -0.6813 -6.7688 1.4919 15 8 0.0560 -6.4259 2.3918 16 6 -1.5060 -8.0225 1.6297 17 7 -1.2396 -8.6417 2.9304 18 6 -2.0056 -8.3005 4.0537 19 6 -3.3912 -8.2990 3.9864 20 6 -4.1315 -7.9823 5.1094 21 6 -3.4916 -7.6584 6.2920 22 6 -2.1104 -7.6548 6.3585 23 6 -1.3651 -7.9700 5.2389 24 6 0.1385 -7.9370 5.2931 25 6 0.6980 -9.3591 5.3639 26 6 -0.0572 -10.2545 4.3813 27 6 -0.2553 -9.5490 3.0690 28 8 0.4741 -9.7979 2.1324 29 6 -0.6280 -3.7547 -0.4240 30 6 0.0419 -2.5702 -0.5135 31 1 -0.4850 0.8401 0.0004 32 1 2.8332 -3.4204 1.2623 33 1 1.6075 -5.5287 1.4180 34 1 -1.3044 -6.3346 -0.3757 35 1 -1.2422 -8.7201 0.8348 36 1 -2.5641 -7.7713 1.5563 37 1 -3.8893 -8.5484 3.0612 38 1 -5.2104 -7.9840 5.0625 39 1 -4.0731 -7.4118 7.1681 40 1 -1.6146 -7.4061 7.2851 41 1 0.5211 -7.4428 4.4001 42 1 0.4557 -7.3801 6.1748 43 1 0.5770 -9.7470 6.3753 44 1 1.7564 -9.3464 5.1039 45 1 -1.0296 -10.5102 4.8023 46 1 0.5142 -11.1679 4.2158 47 1 -1.5949 -3.8635 -0.8928 48 1 -0.3930 -1.7417 -1.0529 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069370276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:23 Heat of formation + Delta-G solvation = -33.426998 kcal Electronic energy + Delta-G solvation = -32424.018088 eV Core-core repulsion = 28214.629870 eV Total energy + Delta-G solvation = -4209.388218 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.42552 -40.99779 -39.68455 -39.04387 -36.55340 -36.25419 -36.04391 -34.74287 -32.00259 -31.58503 -31.33855 -30.69271 -29.68111 -27.68318 -26.51201 -24.78126 -23.70375 -23.32365 -22.64220 -21.71222 -21.39968 -20.56993 -19.31735 -18.69648 -18.33340 -18.06709 -17.54249 -17.07565 -16.91717 -16.73527 -16.31341 -15.73821 -15.67727 -15.42528 -15.32354 -15.06668 -14.83289 -14.67242 -14.49974 -14.18445 -14.05956 -14.01993 -13.67500 -13.62239 -13.27846 -13.21031 -12.86638 -12.74571 -12.60057 -12.57509 -12.48553 -12.38584 -11.99029 -11.80549 -11.78667 -11.42707 -11.31653 -11.23029 -11.01205 -10.72051 -10.44002 -9.69860 -9.50508 -9.16198 -8.76172 -8.52984 -6.35902 0.26301 0.43878 0.75194 1.09772 1.31575 1.37995 1.41759 1.52980 1.70800 1.76119 2.22548 2.38972 2.77117 2.80751 3.39330 3.62034 3.68807 3.75903 3.85046 3.88932 4.07977 4.13674 4.16307 4.26811 4.36109 4.36371 4.43562 4.47511 4.50347 4.63314 4.69060 4.77523 4.88849 4.92054 4.97761 5.07915 5.10937 5.12095 5.16549 5.27664 5.33510 5.41243 5.45779 5.61573 5.65980 5.66821 5.87425 5.94811 5.99855 6.11013 6.27122 6.35898 6.63269 6.66928 6.91451 6.93924 6.96867 7.34775 8.40052 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.002394 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.680030 B =11694.957451 C =12088.133056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.070 0.930 9 C 0.069 3.931 10 C -0.223 4.223 11 C -0.096 4.096 12 C 0.023 3.977 13 N -0.643 5.643 14 C 0.479 3.521 15 O -0.557 6.557 16 C 0.101 3.899 17 N -0.543 5.543 18 C 0.118 3.882 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.097 4.097 24 C -0.101 4.101 25 C -0.097 4.097 26 C -0.132 4.132 27 C 0.520 3.480 28 O -0.575 6.575 29 C -0.116 4.116 30 C -0.158 4.158 31 H 0.285 0.715 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.419 0.581 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 -18.317 10.981 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.193 1.193 7 C -0.529 4.529 8 H 0.088 0.912 9 C 0.067 3.933 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.070 4.070 13 N -0.289 5.289 14 C 0.266 3.734 15 O -0.435 6.435 16 C -0.025 4.025 17 N -0.268 5.268 18 C 0.027 3.973 19 C -0.152 4.152 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.125 4.125 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.172 4.172 27 C 0.311 3.689 28 O -0.454 6.454 29 C -0.136 4.136 30 C -0.178 4.178 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.146 0.854 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.816 -18.119 11.079 24.304 hybrid contribution 0.608 1.002 -0.571 1.304 sum -11.208 -17.117 10.508 23.001 Atomic orbital electron populations 1.69827 1.08509 1.29945 1.38448 1.26733 0.95851 1.04246 0.91522 0.85053 0.78963 0.76085 0.78915 1.18610 1.18546 1.19288 1.19733 0.94753 0.91398 1.47022 0.91180 1.18019 0.93435 0.92555 0.89327 1.20899 1.01481 0.95662 1.06244 1.20437 0.93930 0.97115 1.00172 1.17299 0.93285 0.87381 1.09072 1.42856 1.48766 1.19905 1.17368 1.21835 0.83544 0.86320 0.81711 1.90645 1.40105 1.71460 1.41306 1.21556 1.01700 0.92117 0.87119 1.45156 1.33564 1.39514 1.08520 1.17808 0.91117 1.02065 0.86312 1.21269 0.90960 1.01999 1.00988 1.21376 1.01263 0.97967 0.91853 1.21534 0.94162 0.99234 0.99223 1.21211 0.94532 0.99155 0.97626 1.19868 0.95760 1.00186 0.94051 1.20687 0.91679 0.98212 1.03227 1.21461 0.99094 0.92690 1.00240 1.21724 1.04501 0.99772 0.91186 1.21341 0.77895 0.78413 0.91203 1.90698 1.44577 1.66342 1.43735 1.20570 0.99416 0.91956 1.01674 1.21188 0.97371 0.96521 1.02687 0.90402 0.89083 0.88387 0.74365 0.85446 0.83326 0.83591 0.82755 0.83235 0.84060 0.92920 0.89742 0.87223 0.91693 0.87474 0.87233 0.85372 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.64 10.60 21.82 0.23 -44.41 16 2 C 0.03 1.48 5.42 85.24 0.46 1.94 16 3 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 6 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.50 -28.10 9.02 23.39 0.21 -27.89 16 8 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 9 C 0.07 3.92 5.55 -21.28 -0.12 3.80 16 10 C -0.22 -12.18 9.74 22.48 0.22 -11.96 16 11 C -0.10 -4.92 8.61 22.14 0.19 -4.73 16 12 C 0.02 1.05 6.31 38.57 0.24 1.29 16 13 N -0.64 -21.95 5.30 -303.11 -1.61 -23.56 16 14 C 0.48 16.71 7.73 87.66 0.68 17.39 16 15 O -0.56 -24.67 12.12 -3.05 -0.04 -24.70 16 16 C 0.10 2.41 5.82 85.63 0.50 2.91 16 17 N -0.54 -13.88 1.82 -636.12 -1.16 -15.04 16 18 C 0.12 2.65 4.89 38.03 0.19 2.84 16 19 C -0.13 -2.19 9.34 22.37 0.21 -1.98 16 20 C -0.11 -1.42 10.04 22.27 0.22 -1.20 16 21 C -0.12 -1.72 10.04 22.30 0.22 -1.49 16 22 C -0.11 -1.86 9.68 22.26 0.22 -1.65 16 23 C -0.10 -2.18 4.67 -19.84 -0.09 -2.28 16 24 C -0.10 -2.52 5.31 29.78 0.16 -2.36 16 25 C -0.10 -1.88 6.13 30.55 0.19 -1.69 16 26 C -0.13 -2.63 5.38 29.69 0.16 -2.47 16 27 C 0.52 14.71 6.24 87.56 0.55 15.25 16 28 O -0.57 -20.83 16.76 -3.07 -0.05 -20.88 16 29 C -0.12 -5.27 9.90 22.14 0.22 -5.05 16 30 C -0.16 -8.36 8.62 22.48 0.19 -8.17 16 31 H 0.29 13.69 8.30 -92.70 -0.77 12.92 16 32 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.10 5.13 6.22 -2.91 -0.02 5.11 16 34 H 0.42 10.31 8.82 -92.71 -0.82 9.49 16 35 H 0.13 2.77 7.53 -2.39 -0.02 2.75 16 36 H 0.15 2.31 6.98 -2.39 -0.02 2.29 16 37 H 0.15 1.72 7.43 -2.91 -0.02 1.70 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.14 1.93 8.02 -2.91 -0.02 1.90 16 41 H 0.05 1.85 5.76 -2.39 -0.01 1.84 16 42 H 0.08 1.87 7.97 -2.39 -0.02 1.85 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.70 7.22 -2.39 -0.02 1.68 16 46 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 47 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 48 H 0.12 6.62 6.13 -2.91 -0.02 6.60 16 Total: -1.00 -78.71 390.80 4.41 -74.30 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: 0.19 Total: 39.99 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.81 Total: -27.50 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.54 Total: -83.00 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.09 Total: -45.59 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -78.71 4.41 -74.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069370276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.876 kcal (2) G-P(sol) polarization free energy of solvation -78.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds