Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38063 * 119.99583 * 2 1 4 4 C 1.38928 * 119.98796 * 180.02562 * 3 2 1 5 5 S 1.76200 * 120.00920 * 180.02562 * 4 3 2 6 6 C 1.81405 * 102.99978 * 185.66013 * 5 4 3 7 7 C 1.52998 * 109.46862 * 190.26372 * 6 5 4 8 8 C 1.53011 * 109.46917 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46978 * 59.99705 * 8 7 6 10 10 C 1.52992 * 109.47107 * 300.00110 * 9 8 7 11 11 C 1.52996 * 109.47407 * 60.00420 * 10 9 8 12 12 C 1.38977 * 119.98243 * 359.72456 * 4 3 2 13 13 C 1.38021 * 119.98651 * 0.52953 * 12 4 3 14 14 C 1.38845 * 119.99544 * 179.97438 * 2 1 3 15 15 N 1.40150 * 119.98743 * 0.02562 * 14 2 1 16 16 C 1.34776 * 119.99890 * 145.99882 * 15 14 2 17 17 O 1.21288 * 120.00129 * 354.29422 * 16 15 14 18 18 C 1.50703 * 119.99870 * 174.29025 * 16 15 14 19 19 S 1.80999 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00266 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99777 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00230 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99648 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46759 * 90.00083 * 24 22 20 26 26 H 1.48500 * 109.47237 * 210.00149 * 24 22 20 27 27 H 1.48503 * 109.47103 * 330.00099 * 24 22 20 28 28 H 1.09003 * 109.46664 * 270.02210 * 1 2 3 29 29 H 1.08999 * 109.47072 * 30.01853 * 1 2 3 30 30 H 1.08993 * 109.47134 * 150.02078 * 1 2 3 31 31 H 1.07994 * 120.00541 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46963 * 310.25873 * 6 5 4 33 33 H 1.08998 * 109.47157 * 299.99864 * 7 6 5 34 34 H 1.08997 * 109.47585 * 60.00159 * 7 6 5 35 35 H 1.08998 * 109.47056 * 299.99876 * 8 7 6 36 36 H 1.08999 * 109.47071 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.46842 * 179.97438 * 9 8 7 38 38 H 1.08998 * 109.47087 * 60.00190 * 9 8 7 39 39 H 1.08998 * 109.47212 * 300.00004 * 10 9 8 40 40 H 1.09010 * 109.47283 * 180.02562 * 10 9 8 41 41 H 1.09008 * 109.47447 * 179.97438 * 11 10 9 42 42 H 1.08998 * 109.47274 * 59.99621 * 11 10 9 43 43 H 1.07993 * 120.00649 * 180.27458 * 12 4 3 44 44 H 1.07998 * 119.99629 * 179.74094 * 13 12 4 45 45 H 0.97003 * 120.00148 * 325.99823 * 15 14 2 46 46 H 1.08996 * 109.47663 * 300.00459 * 18 16 15 47 47 H 1.09000 * 109.46843 * 60.00392 * 18 16 15 48 48 H 0.96994 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1957 0.0000 4 6 3.5865 1.1955 -0.0005 5 16 4.4680 2.7212 0.0001 6 6 6.1951 2.1947 -0.1752 7 6 7.1194 3.3903 0.0635 8 6 8.5761 2.9464 -0.0850 9 6 8.8017 2.4011 -1.4967 10 6 7.8773 1.2056 -1.7353 11 6 6.4207 1.6495 -1.5868 12 6 4.2809 -0.0084 0.0047 13 6 3.5900 -1.2032 -0.0006 14 6 2.2011 -1.2025 0.0005 15 7 1.5000 -2.4160 0.0005 16 6 2.0010 -3.4837 -0.6517 17 8 3.0040 -3.3680 -1.3239 18 6 1.3151 -4.8214 -0.5459 19 16 2.2218 -6.0436 -1.5257 20 6 1.2296 -7.4695 -1.2306 21 1 0.3571 -7.3987 -0.5980 22 6 1.5699 -8.6839 -1.8102 23 7 2.6341 -8.7705 -2.5799 24 14 0.5184 -10.1957 -1.4967 25 1 -0.5439 -10.2827 -2.5307 26 1 1.3689 -11.4115 -1.5572 27 1 -0.1057 -10.0946 -0.1530 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6573 2.1310 -0.0004 32 1 6.4132 1.4154 0.5550 33 1 6.9012 4.1697 -0.6666 34 1 6.9584 3.7791 1.0690 35 1 8.7946 2.1669 0.6448 36 1 9.2346 3.7983 0.0846 37 1 9.8395 2.0853 -1.6026 38 1 8.5832 3.1807 -2.2265 39 1 8.0958 0.4261 -1.0054 40 1 8.0383 0.8168 -2.7409 41 1 5.7621 0.7977 -1.7573 42 1 6.2022 2.4290 -2.3167 43 1 5.3608 -0.0089 0.0088 44 1 4.1294 -2.1388 -0.0007 45 1 0.6542 -2.4875 0.4700 46 1 1.2927 -5.1368 0.4972 47 1 0.2955 -4.7376 -0.9221 48 1 2.8717 -9.6191 -2.9853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069454228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -38.859633 kcal Electronic energy + Delta-G solvation = -27049.587208 eV Core-core repulsion = 23320.441574 eV Total energy + Delta-G solvation = -3729.145634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.122 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.46407 -38.74972 -38.34062 -34.75127 -32.84863 -32.48188 -31.23761 -31.18104 -30.63497 -28.62517 -26.95527 -25.54199 -23.58733 -22.99980 -22.66781 -21.66079 -20.40667 -20.16741 -18.15216 -17.55832 -17.27379 -16.56510 -16.00020 -15.55393 -15.43143 -14.85200 -14.80393 -14.65617 -14.48443 -14.36143 -13.97971 -13.95300 -13.46710 -13.33737 -13.26536 -13.03033 -12.67281 -12.64339 -12.61075 -12.36718 -12.17535 -12.06050 -11.67488 -11.55580 -11.41240 -11.10920 -11.07688 -10.98851 -10.84710 -10.81898 -10.52345 -10.48347 -10.08452 -9.88592 -9.56880 -9.11828 -8.89171 -8.80124 -8.32672 -7.29998 -6.57476 -6.27136 -3.98672 1.06409 1.28660 1.35952 2.24551 2.84972 2.88142 3.19069 3.23826 3.27610 3.57081 3.65108 4.14637 4.23540 4.24492 4.55673 4.61799 4.72920 4.76573 4.82071 4.92176 4.98196 5.02900 5.06068 5.08363 5.12495 5.20020 5.23861 5.37050 5.41641 5.42384 5.49757 5.59431 5.62324 5.66046 5.73690 5.75514 5.75907 5.76318 5.87145 5.91082 5.94854 6.02195 6.04637 6.07363 6.19109 6.33699 6.46126 6.94700 7.46156 7.54621 8.29740 8.36378 9.18337 10.80280 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.001946 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.456018 B =14383.799235 C =16161.556959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.082 4.082 4 C -0.098 4.098 5 S -0.132 6.132 6 C -0.069 4.069 7 C -0.098 4.098 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.116 4.116 13 C -0.099 4.099 14 C 0.157 3.843 15 N -0.679 5.679 16 C 0.531 3.469 17 O -0.495 6.495 18 C -0.154 4.154 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.074 0.926 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.409 0.591 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 25.917 7.318 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.211 4.211 5 S 0.115 5.885 6 C -0.198 4.198 7 C -0.137 4.137 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.158 4.158 12 C -0.140 4.140 13 C -0.121 4.121 14 C 0.060 3.940 15 N -0.326 5.326 16 C 0.319 3.681 17 O -0.367 6.367 18 C -0.305 4.305 19 S 0.170 5.830 20 C -0.685 4.685 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.245 0.755 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.060 27.106 6.194 28.458 hybrid contribution -1.850 -2.550 1.070 3.327 sum 4.210 24.557 7.264 25.952 Atomic orbital electron populations 1.20739 0.90630 1.03343 1.02388 1.19571 0.96092 0.91310 1.03494 1.20355 0.91554 0.97229 1.01423 1.21475 0.96501 0.96005 1.07166 1.85247 1.02194 1.08996 1.92088 1.23458 0.93220 1.01811 1.01289 1.21353 0.93820 0.95872 1.02676 1.21538 0.95219 1.01031 0.97543 1.21566 0.99480 0.98017 0.96831 1.21571 0.94087 0.97862 1.02291 1.21956 0.97393 1.01837 0.94635 1.21054 0.99654 0.91068 1.02208 1.21095 0.92642 0.98876 0.99448 1.17628 0.91303 0.84941 1.00093 1.43763 1.25463 1.09274 1.54136 1.20548 0.84796 0.84975 0.77826 1.90721 1.24484 1.84169 1.37352 1.23550 1.04420 0.95898 1.06611 1.85416 1.36184 1.00089 1.61321 1.22853 1.14492 0.95117 1.36028 0.90828 1.25001 0.95488 0.98613 0.94480 1.70011 1.24129 1.26414 1.29651 0.86151 0.79658 0.80829 0.78773 1.20229 1.20716 1.19664 0.91003 0.91042 0.91319 0.85444 0.88856 0.90992 0.90953 0.91670 0.91394 0.91772 0.91829 0.91747 0.91296 0.90793 0.90702 0.85517 0.84193 0.75470 0.88742 0.88867 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.47 36.01 0.34 -0.65 16 2 C -0.10 -1.18 5.89 -104.46 -0.62 -1.79 16 3 C -0.08 -0.94 9.44 -39.39 -0.37 -1.31 16 4 C -0.10 -1.18 6.03 -39.05 -0.24 -1.42 16 5 S -0.13 -1.35 21.30 -107.50 -2.29 -3.64 16 6 C -0.07 -0.59 1.86 -26.73 -0.05 -0.64 16 7 C -0.10 -0.68 5.21 -26.73 -0.14 -0.81 16 8 C -0.11 -0.68 5.92 -26.73 -0.16 -0.84 16 9 C -0.12 -0.78 5.92 -26.74 -0.16 -0.94 16 10 C -0.12 -0.92 5.92 -26.74 -0.16 -1.08 16 11 C -0.12 -1.05 4.78 -26.73 -0.13 -1.18 16 12 C -0.12 -1.49 8.06 -39.39 -0.32 -1.80 16 13 C -0.10 -1.46 8.65 -39.42 -0.34 -1.80 16 14 C 0.16 2.19 6.25 -83.59 -0.52 1.67 16 15 N -0.68 -9.31 4.77 -9.81 -0.05 -9.36 16 16 C 0.53 9.58 7.57 -10.98 -0.08 9.50 16 17 O -0.50 -10.75 13.61 5.55 0.08 -10.67 16 18 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 20 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.09 0.82 6.82 -51.92 -0.35 0.46 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.79 6.08 -51.92 -0.32 0.47 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.13 1.44 4.91 -52.49 -0.26 1.19 16 44 H 0.14 2.32 6.47 -52.49 -0.34 1.98 16 45 H 0.41 4.23 7.81 -40.82 -0.32 3.91 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 47 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -32.87 405.68 -12.58 -45.46 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.42 Total: 3.31 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.52 Total: -18.54 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.69 Total: -34.40 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -4.50 Total: -7.34 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.87 -12.58 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069454228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.599 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds