Wall clock time and date at job start Tue Mar 31 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38063 * 119.99583 * 2 1 4 4 C 1.38928 * 119.98796 * 180.02562 * 3 2 1 5 5 S 1.76200 * 120.00920 * 180.02562 * 4 3 2 6 6 C 1.81405 * 102.99978 * 185.66013 * 5 4 3 7 7 C 1.52998 * 109.46862 * 190.26372 * 6 5 4 8 8 C 1.53011 * 109.46917 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46978 * 59.99705 * 8 7 6 10 10 C 1.52992 * 109.47107 * 300.00110 * 9 8 7 11 11 C 1.52996 * 109.47407 * 60.00420 * 10 9 8 12 12 C 1.38977 * 119.98243 * 359.72456 * 4 3 2 13 13 C 1.38021 * 119.98651 * 0.52953 * 12 4 3 14 14 C 1.38845 * 119.99544 * 179.97438 * 2 1 3 15 15 N 1.40150 * 119.98743 * 0.02562 * 14 2 1 16 16 C 1.34776 * 119.99890 * 145.99882 * 15 14 2 17 17 O 1.21288 * 120.00129 * 354.29422 * 16 15 14 18 18 C 1.50703 * 119.99870 * 174.29025 * 16 15 14 19 19 S 1.80999 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00266 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99777 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00230 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99648 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46759 * 90.00083 * 24 22 20 26 26 H 1.48500 * 109.47237 * 210.00149 * 24 22 20 27 27 H 1.48503 * 109.47103 * 330.00099 * 24 22 20 28 28 H 1.09003 * 109.46664 * 270.02210 * 1 2 3 29 29 H 1.08999 * 109.47072 * 30.01853 * 1 2 3 30 30 H 1.08993 * 109.47134 * 150.02078 * 1 2 3 31 31 H 1.07994 * 120.00541 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46963 * 310.25873 * 6 5 4 33 33 H 1.08998 * 109.47157 * 299.99864 * 7 6 5 34 34 H 1.08997 * 109.47585 * 60.00159 * 7 6 5 35 35 H 1.08998 * 109.47056 * 299.99876 * 8 7 6 36 36 H 1.08999 * 109.47071 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.46842 * 179.97438 * 9 8 7 38 38 H 1.08998 * 109.47087 * 60.00190 * 9 8 7 39 39 H 1.08998 * 109.47212 * 300.00004 * 10 9 8 40 40 H 1.09010 * 109.47283 * 180.02562 * 10 9 8 41 41 H 1.09008 * 109.47447 * 179.97438 * 11 10 9 42 42 H 1.08998 * 109.47274 * 59.99621 * 11 10 9 43 43 H 1.07993 * 120.00649 * 180.27458 * 12 4 3 44 44 H 1.07998 * 119.99629 * 179.74094 * 13 12 4 45 45 H 0.97003 * 120.00148 * 325.99823 * 15 14 2 46 46 H 1.08996 * 109.47663 * 300.00459 * 18 16 15 47 47 H 1.09000 * 109.46843 * 60.00392 * 18 16 15 48 48 H 0.96994 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1957 0.0000 4 6 3.5865 1.1955 -0.0005 5 16 4.4680 2.7212 0.0001 6 6 6.1951 2.1947 -0.1752 7 6 7.1194 3.3903 0.0635 8 6 8.5761 2.9464 -0.0850 9 6 8.8017 2.4011 -1.4967 10 6 7.8773 1.2056 -1.7353 11 6 6.4207 1.6495 -1.5868 12 6 4.2809 -0.0084 0.0047 13 6 3.5900 -1.2032 -0.0006 14 6 2.2011 -1.2025 0.0005 15 7 1.5000 -2.4160 0.0005 16 6 2.0010 -3.4837 -0.6517 17 8 3.0040 -3.3680 -1.3239 18 6 1.3151 -4.8214 -0.5459 19 16 2.2218 -6.0436 -1.5257 20 6 1.2296 -7.4695 -1.2306 21 1 0.3571 -7.3987 -0.5980 22 6 1.5699 -8.6839 -1.8102 23 7 2.6341 -8.7705 -2.5799 24 14 0.5184 -10.1957 -1.4967 25 1 -0.5439 -10.2827 -2.5307 26 1 1.3689 -11.4115 -1.5572 27 1 -0.1057 -10.0946 -0.1530 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6573 2.1310 -0.0004 32 1 6.4132 1.4154 0.5550 33 1 6.9012 4.1697 -0.6666 34 1 6.9584 3.7791 1.0690 35 1 8.7946 2.1669 0.6448 36 1 9.2346 3.7983 0.0846 37 1 9.8395 2.0853 -1.6026 38 1 8.5832 3.1807 -2.2265 39 1 8.0958 0.4261 -1.0054 40 1 8.0383 0.8168 -2.7409 41 1 5.7621 0.7977 -1.7573 42 1 6.2022 2.4290 -2.3167 43 1 5.3608 -0.0089 0.0088 44 1 4.1294 -2.1388 -0.0007 45 1 0.6542 -2.4875 0.4700 46 1 1.2927 -5.1368 0.4972 47 1 0.2955 -4.7376 -0.9221 48 1 2.8717 -9.6191 -2.9853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069454228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:23 Heat of formation + Delta-G solvation = -55.484579 kcal Electronic energy + Delta-G solvation = -27050.308120 eV Core-core repulsion = 23320.441574 eV Total energy + Delta-G solvation = -3729.866546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.122 amu Computer time = 8.17 seconds Orbital eigenvalues (eV) -41.66359 -39.67638 -39.25501 -35.97609 -34.60065 -33.77644 -32.06502 -31.83973 -31.70876 -29.90173 -27.86570 -27.62593 -24.57179 -23.62626 -23.43609 -22.63901 -21.68324 -20.82564 -19.92840 -18.80308 -18.20181 -17.98235 -16.89716 -16.88383 -16.73144 -16.32466 -15.99065 -15.87371 -15.32947 -15.19815 -15.08340 -14.90702 -14.77181 -14.53557 -14.21123 -14.11443 -13.74168 -13.67169 -13.34487 -13.31222 -13.18177 -13.05250 -12.90592 -12.76419 -12.64145 -12.46077 -12.42404 -12.10794 -11.78657 -11.73266 -11.62955 -11.41054 -11.15633 -11.13578 -11.03749 -10.78988 -10.31327 -9.97217 -9.74026 -8.69629 -8.36462 -8.22059 -6.14753 0.02658 0.29188 0.53559 1.21749 1.39563 1.41805 1.44164 1.47252 1.55216 2.11031 2.25167 2.62232 2.98129 3.26070 3.57526 3.60268 3.68276 3.81210 3.85026 3.96852 4.12454 4.15070 4.21436 4.23653 4.29784 4.37498 4.40915 4.43599 4.47133 4.51032 4.61349 4.61888 4.80237 4.86131 4.86599 5.02762 5.03398 5.04884 5.13771 5.16494 5.17739 5.23237 5.29007 5.31039 5.34293 5.40937 5.41331 5.48040 5.88019 6.18400 6.31184 7.04562 7.05480 8.72679 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.001946 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.456018 B =14383.799235 C =16161.556959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.102 4.102 5 S -0.124 6.124 6 C -0.066 4.066 7 C -0.094 4.094 8 C -0.111 4.111 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.119 4.119 14 C 0.132 3.868 15 N -0.655 5.655 16 C 0.535 3.465 17 O -0.540 6.540 18 C -0.129 4.129 19 S -0.147 6.147 20 C -0.546 4.546 21 H 0.085 0.915 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.257 1.257 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.427 0.573 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 27.736 8.738 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.110 4.110 4 C -0.215 4.215 5 S 0.123 5.877 6 C -0.195 4.195 7 C -0.133 4.133 8 C -0.150 4.150 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.155 4.155 12 C -0.146 4.146 13 C -0.141 4.141 14 C 0.036 3.964 15 N -0.303 5.303 16 C 0.322 3.678 17 O -0.416 6.416 18 C -0.280 4.280 19 S 0.080 5.920 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.181 1.181 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.150 0.850 44 H 0.130 0.870 45 H 0.267 0.733 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.282 28.973 7.651 30.270 hybrid contribution -1.264 -2.910 0.663 3.242 sum 3.018 26.062 8.314 27.522 Atomic orbital electron populations 1.20849 0.88063 1.04122 1.04061 1.19890 0.97850 0.90242 1.01378 1.20713 0.91436 0.98128 1.00702 1.21748 0.97291 0.96536 1.05951 1.85180 1.03153 1.07663 1.91671 1.23533 0.92518 1.02586 1.00824 1.21370 0.93866 0.94995 1.03116 1.21538 0.94760 1.01608 0.97116 1.21556 0.99433 0.97319 0.97306 1.21574 0.93734 0.98551 1.01994 1.21886 0.97689 1.00920 0.94980 1.21080 1.00009 0.90964 1.02579 1.21009 0.93499 0.98474 1.01110 1.17764 0.91093 0.85492 1.02089 1.43360 1.25738 1.08234 1.52966 1.20306 0.84165 0.85483 0.77850 1.90717 1.26436 1.84785 1.39668 1.23362 1.04180 0.94260 1.06177 1.85607 1.39182 1.03205 1.63981 1.23204 1.14628 0.95461 1.36050 0.89689 1.26135 0.96803 1.02279 0.93995 1.70180 1.26225 1.27356 1.31002 0.84950 0.77665 0.76032 0.79323 1.19309 1.20411 1.18111 0.88735 0.89454 0.91381 0.83101 0.89235 0.90697 0.90322 0.91753 0.89768 0.90967 0.91428 0.92235 0.91640 0.93104 0.90631 0.85048 0.86998 0.73303 0.86658 0.86514 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.47 71.24 0.67 -0.96 16 2 C -0.09 -1.94 5.89 -19.76 -0.12 -2.06 16 3 C -0.09 -1.82 9.44 22.39 0.21 -1.61 16 4 C -0.10 -2.39 6.03 22.61 0.14 -2.26 16 5 S -0.12 -2.38 21.30 -56.49 -1.20 -3.59 16 6 C -0.07 -1.08 1.86 30.59 0.06 -1.03 16 7 C -0.09 -1.15 5.21 30.60 0.16 -0.99 16 8 C -0.11 -1.14 5.92 30.60 0.18 -0.96 16 9 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 10 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 11 C -0.12 -2.07 4.78 30.59 0.15 -1.92 16 12 C -0.12 -3.25 8.06 22.40 0.18 -3.07 16 13 C -0.12 -3.70 8.65 22.37 0.19 -3.50 16 14 C 0.13 3.65 6.25 38.11 0.24 3.89 16 15 N -0.66 -17.49 4.77 -303.34 -1.45 -18.94 16 16 C 0.53 19.54 7.57 87.66 0.66 20.20 16 17 O -0.54 -24.66 13.61 -3.05 -0.04 -24.70 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 20 C -0.55 -30.61 9.50 67.96 0.65 -29.97 16 21 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 24 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.07 1.00 7.15 -2.39 -0.02 0.99 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.09 1.56 6.82 -2.39 -0.02 1.54 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.05 1.14 6.08 -2.38 -0.01 1.13 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.13 3.20 4.91 -2.91 -0.01 3.19 16 44 H 0.11 4.07 6.47 -2.91 -0.02 4.05 16 45 H 0.43 7.95 7.81 -92.71 -0.72 7.23 16 46 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 47 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 48 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -74.38 405.68 3.35 -71.04 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.25 Total: 25.89 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.64 Total: -30.37 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.16 Total: -74.22 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -2.37 Total: -12.75 kcal Total: -74.38 3.35 -71.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069454228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.553 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.17 seconds