Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47376 * 274.99779 * 3 2 1 5 5 H 1.48501 * 109.46981 * 35.00342 * 3 2 1 6 6 H 1.48503 * 109.46893 * 154.99760 * 3 2 1 7 7 C 1.39943 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00047 * 150.63058 * 7 2 1 9 9 C 1.41436 * 120.00084 * 330.63413 * 7 2 1 10 10 C 1.40788 * 120.17411 * 345.89018 * 9 7 2 11 11 C 1.37715 * 120.03687 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41196 * 359.74055 * 11 10 9 13 13 C 1.39883 * 120.35903 * 0.51512 * 12 11 10 14 14 C 1.47885 * 120.02664 * 179.76209 * 13 12 11 15 15 O 1.21549 * 120.00139 * 185.83327 * 14 13 12 16 16 N 1.34777 * 119.99871 * 5.82717 * 14 13 12 17 17 C 1.47422 * 125.64677 * 182.46123 * 16 14 13 18 18 C 1.54914 * 104.83518 * 155.90740 * 17 16 14 19 19 C 1.55400 * 101.66191 * 36.92180 * 18 17 16 20 20 C 1.47016 * 125.65128 * 2.49992 * 16 14 13 21 21 H 1.08997 * 109.88141 * 300.59752 * 20 16 14 22 22 C 1.50703 * 109.88306 * 61.60639 * 20 16 14 23 23 C 1.38255 * 119.92499 * 26.77732 * 22 20 16 24 24 C 1.38243 * 120.14358 * 179.97438 * 23 22 20 25 25 C 1.38545 * 120.02694 * 0.05243 * 24 23 22 26 26 C 1.39266 * 119.82846 * 359.97401 * 25 24 23 27 27 C 1.38229 * 119.93183 * 206.80436 * 22 20 16 28 28 O 1.36709 * 108.70336 * 180.12011 * 26 25 24 29 29 C 1.43987 * 105.37379 * 17.08015 * 28 26 25 30 30 O 1.36498 * 131.53548 * 179.97438 * 25 24 23 31 31 C 1.39034 * 119.94881 * 359.49246 * 13 12 11 32 32 H 0.97003 * 119.99902 * 359.97438 * 1 2 3 33 33 H 1.07994 * 119.98335 * 359.95721 * 10 9 7 34 34 H 1.08001 * 119.79493 * 179.97438 * 11 10 9 35 35 H 1.08004 * 119.82267 * 180.28093 * 12 11 10 36 36 H 1.09005 * 110.36934 * 274.74417 * 17 16 14 37 37 H 1.09002 * 110.37312 * 37.06521 * 17 16 14 38 38 H 1.08994 * 111.00284 * 155.07849 * 18 17 16 39 39 H 1.08992 * 111.00296 * 278.89676 * 18 17 16 40 40 H 1.09001 * 110.85308 * 206.30178 * 19 18 17 41 41 H 1.09001 * 110.69639 * 82.95601 * 19 18 17 42 42 H 1.07997 * 119.93103 * 0.02722 * 23 22 20 43 43 H 1.07991 * 119.98563 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.98531 * 359.97438 * 27 22 20 45 45 H 1.09005 * 110.57253 * 214.42984 * 29 28 26 46 46 H 1.08995 * 110.57430 * 91.70400 * 29 28 26 47 47 H 1.07999 * 120.20528 * 180.23088 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3841 2.1074 -1.3947 5 1 1.4965 2.6198 0.8031 6 1 3.5886 1.4119 0.5918 7 6 2.0080 -1.2119 -0.0005 8 1 2.9838 -1.2719 -0.4593 9 6 1.4371 -2.3584 0.5996 10 6 0.3209 -2.2314 1.4482 11 6 -0.2330 -3.3496 2.0306 12 6 0.2973 -4.6036 1.7836 13 6 1.4093 -4.7487 0.9475 14 6 1.9733 -6.0919 0.6928 15 8 3.0006 -6.2085 0.0537 16 7 1.3481 -7.1867 1.1693 17 6 1.8246 -8.5752 1.0341 18 6 1.1622 -9.3380 2.2085 19 6 -0.2347 -8.6605 2.2750 20 6 0.0778 -7.1942 1.9093 21 1 0.1740 -6.5981 2.8168 22 6 -1.0226 -6.6360 1.0441 23 6 -0.9312 -6.7273 -0.3324 24 6 -1.9383 -6.2174 -1.1304 25 6 -3.0420 -5.6121 -0.5517 26 6 -3.1338 -5.5196 0.8349 27 6 -2.1209 -6.0335 1.6283 28 8 -4.3042 -4.8901 1.1557 29 6 -5.1139 -4.9607 -0.0328 30 8 -4.1521 -5.0389 -1.1015 31 6 1.9805 -3.6299 0.3517 32 1 -0.4850 0.8401 0.0004 33 1 -0.1010 -1.2565 1.6427 34 1 -1.0890 -3.2476 2.6813 35 1 -0.1475 -5.4746 2.2418 36 1 1.5043 -8.9951 0.0805 37 1 2.9105 -8.6140 1.1210 38 1 1.0715 -10.4004 1.9826 39 1 1.7143 -9.1835 3.1355 40 1 -0.6507 -8.7269 3.2804 41 1 -0.9129 -9.1037 1.5459 42 1 -0.0716 -7.1988 -0.7853 43 1 -1.8645 -6.2904 -2.2053 44 1 -2.1897 -5.9635 2.7039 45 1 -5.7259 -4.0643 -0.1331 46 1 -5.7415 -5.8517 -0.0164 47 1 2.8368 -3.7376 -0.2975 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069458005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -3.371048 kcal Electronic energy + Delta-G solvation = -33900.079257 eV Core-core repulsion = 29594.275701 eV Total energy + Delta-G solvation = -4305.803556 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -42.01785 -40.59723 -37.93346 -37.26469 -36.37953 -36.09219 -33.83513 -31.96745 -31.46870 -30.11032 -29.69866 -29.32811 -27.74387 -25.62332 -25.31818 -24.30083 -22.82061 -22.51692 -21.40729 -21.11437 -20.44590 -19.26088 -17.87265 -17.72529 -17.43549 -16.71833 -16.58088 -15.95453 -15.66448 -15.49092 -14.97385 -14.67437 -14.30785 -14.13018 -13.90742 -13.68186 -13.56100 -13.42549 -13.13005 -12.96966 -12.84177 -12.76247 -12.69438 -12.43573 -12.24409 -12.07172 -11.74888 -11.36753 -11.27212 -11.13936 -11.11643 -11.02709 -10.77939 -10.65162 -10.48093 -10.34035 -9.99888 -9.41766 -9.12952 -9.00385 -8.54858 -8.46218 -7.83867 -7.51838 -7.44953 -6.89352 -4.32486 1.32519 1.45337 2.25528 2.79172 2.90323 3.05568 3.09031 3.21843 3.26576 3.59774 3.74878 3.84422 3.90397 4.41464 4.54439 4.57194 4.68093 4.70960 4.75196 4.92392 5.02058 5.11899 5.27942 5.36053 5.39178 5.40011 5.51887 5.63676 5.67791 5.70179 5.74549 5.83612 5.89600 6.05580 6.18607 6.23966 6.26074 6.37802 6.41514 6.49742 6.59396 6.68768 6.95425 6.98807 7.13392 7.20496 7.30789 7.43070 7.71277 7.87550 7.96757 7.99764 8.22835 8.57315 8.78319 8.84340 8.91829 10.04850 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004332 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.764815 B = 6462.368211 C = 8917.713862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.083 3.917 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.158 4.158 11 C -0.105 4.105 12 C -0.246 4.246 13 C -0.110 4.110 14 C 0.583 3.417 15 O -0.549 6.549 16 N -0.616 5.616 17 C 0.105 3.895 18 C -0.132 4.132 19 C -0.127 4.127 20 C 0.171 3.829 21 H 0.106 0.894 22 C -0.063 4.063 23 C -0.091 4.091 24 C -0.093 4.093 25 C 0.030 3.970 26 C 0.038 3.962 27 C -0.086 4.086 28 O -0.309 6.309 29 C 0.214 3.786 30 O -0.310 6.310 31 C -0.165 4.165 32 H 0.282 0.718 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.078 0.922 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -14.827 4.352 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.178 4.178 11 C -0.123 4.123 12 C -0.264 4.264 13 C -0.113 4.113 14 C 0.377 3.623 15 O -0.427 6.427 16 N -0.351 5.351 17 C -0.018 4.018 18 C -0.170 4.170 19 C -0.165 4.165 20 C 0.067 3.933 21 H 0.123 0.877 22 C -0.065 4.065 23 C -0.110 4.110 24 C -0.112 4.112 25 C -0.014 4.014 26 C -0.006 4.006 27 C -0.105 4.105 28 O -0.225 6.225 29 C 0.102 3.898 30 O -0.226 6.226 31 C -0.185 4.185 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.144 0.856 46 H 0.096 0.904 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.357 -14.469 3.917 17.161 hybrid contribution -0.077 1.170 -0.190 1.188 sum -8.434 -13.298 3.727 16.182 Atomic orbital electron populations 1.69904 1.07966 1.29618 1.32241 1.25947 0.94439 1.01600 0.91776 0.86423 0.81304 0.80648 0.79200 1.19458 1.19910 1.18126 1.19580 1.03620 0.93019 1.32603 0.90087 1.17501 0.91176 0.91365 0.90400 1.21518 0.99222 0.97836 0.99197 1.20536 0.98683 0.93207 0.99876 1.21838 0.99940 0.98076 1.06580 1.19130 0.98751 0.90472 1.02955 1.18702 0.82657 0.83901 0.77044 1.90686 1.24675 1.86796 1.40571 1.48408 1.22766 1.06236 1.57675 1.22170 0.99994 0.81586 0.98029 1.22833 0.95786 0.99523 0.98894 1.22837 0.97659 0.93236 1.02761 1.20874 0.81939 0.96505 0.93968 0.87709 1.19531 0.94243 0.98392 0.94304 1.20566 0.97566 1.00267 0.92589 1.19949 0.91705 0.98989 1.00515 1.19699 0.91542 0.99606 0.90577 1.19571 0.90088 0.98556 0.92384 1.19617 0.92045 0.99341 0.99463 1.87402 1.25387 1.73794 1.35911 1.25515 0.89219 1.03468 0.71618 1.87351 1.23081 1.77385 1.34809 1.21033 1.02589 0.91175 1.03734 0.90683 0.86287 0.89456 0.85225 0.91807 0.90422 0.89890 0.90479 0.89642 0.90141 0.85190 0.85162 0.84945 0.85600 0.90416 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.91 11.04 55.55 0.61 -19.30 16 2 C 0.08 2.08 4.97 -17.34 -0.09 2.00 16 3 Si 0.90 18.64 29.65 -169.99 -5.04 13.60 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.41 9.01 -37.73 -0.34 -12.75 16 8 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.10 2.65 5.65 -106.87 -0.60 2.05 16 10 C -0.16 -4.09 8.82 -38.81 -0.34 -4.44 16 11 C -0.10 -2.38 9.94 -39.72 -0.39 -2.78 16 12 C -0.25 -5.14 6.52 -38.92 -0.25 -5.39 16 13 C -0.11 -2.53 5.55 -105.04 -0.58 -3.11 16 14 C 0.58 12.15 6.91 -12.31 -0.09 12.06 16 15 O -0.55 -13.00 16.63 5.32 0.09 -12.91 16 16 N -0.62 -9.65 2.12 -168.81 -0.36 -10.00 16 17 C 0.10 1.27 6.90 -2.53 -0.02 1.25 16 18 C -0.13 -1.11 7.09 -24.45 -0.17 -1.29 16 19 C -0.13 -1.12 6.49 -24.76 -0.16 -1.28 16 20 C 0.17 2.21 2.37 -68.11 -0.16 2.05 16 21 H 0.11 1.39 6.04 -51.93 -0.31 1.08 16 22 C -0.06 -0.92 2.41 -104.62 -0.25 -1.17 16 23 C -0.09 -1.42 8.68 -39.57 -0.34 -1.76 16 24 C -0.09 -1.48 10.06 -39.47 -0.40 -1.87 16 25 C 0.03 0.50 7.15 -39.09 -0.28 0.22 16 26 C 0.04 0.61 7.15 -39.08 -0.28 0.33 16 27 C -0.09 -1.25 7.80 -39.47 -0.31 -1.56 16 28 O -0.31 -4.72 11.42 -46.36 -0.53 -5.25 16 29 C 0.21 2.57 8.88 101.05 0.90 3.46 16 30 O -0.31 -4.91 11.40 -45.67 -0.52 -5.43 16 31 C -0.16 -4.28 9.34 -38.44 -0.36 -4.64 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.12 3.18 5.85 -52.49 -0.31 2.87 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 2.25 1.38 -57.04 -0.08 2.17 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.68 7.84 -51.93 -0.41 0.27 16 42 H 0.13 2.01 7.13 -52.49 -0.37 1.64 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.13 1.65 8.01 -52.49 -0.42 1.23 16 45 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 2.71 7.65 -52.49 -0.40 2.31 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.40 378.49 -10.22 -42.62 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.66 Total: 9.57 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -4.52 Total: -18.61 kcal Atomic # 7 Polarization: -29.56 SS G_CDS: 0.26 Total: -29.30 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.96 Total: -23.58 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.04 Total: 13.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.40 -10.22 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069458005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.250 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds