Wall clock time and date at job start Tue Mar 31 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47376 * 274.99779 * 3 2 1 5 5 H 1.48501 * 109.46981 * 35.00342 * 3 2 1 6 6 H 1.48503 * 109.46893 * 154.99760 * 3 2 1 7 7 C 1.39943 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00047 * 150.63058 * 7 2 1 9 9 C 1.41436 * 120.00084 * 330.63413 * 7 2 1 10 10 C 1.40788 * 120.17411 * 345.89018 * 9 7 2 11 11 C 1.37715 * 120.03687 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41196 * 359.74055 * 11 10 9 13 13 C 1.39883 * 120.35903 * 0.51512 * 12 11 10 14 14 C 1.47885 * 120.02664 * 179.76209 * 13 12 11 15 15 O 1.21549 * 120.00139 * 185.83327 * 14 13 12 16 16 N 1.34777 * 119.99871 * 5.82717 * 14 13 12 17 17 C 1.47422 * 125.64677 * 182.46123 * 16 14 13 18 18 C 1.54914 * 104.83518 * 155.90740 * 17 16 14 19 19 C 1.55400 * 101.66191 * 36.92180 * 18 17 16 20 20 C 1.47016 * 125.65128 * 2.49992 * 16 14 13 21 21 H 1.08997 * 109.88141 * 300.59752 * 20 16 14 22 22 C 1.50703 * 109.88306 * 61.60639 * 20 16 14 23 23 C 1.38255 * 119.92499 * 26.77732 * 22 20 16 24 24 C 1.38243 * 120.14358 * 179.97438 * 23 22 20 25 25 C 1.38545 * 120.02694 * 0.05243 * 24 23 22 26 26 C 1.39266 * 119.82846 * 359.97401 * 25 24 23 27 27 C 1.38229 * 119.93183 * 206.80436 * 22 20 16 28 28 O 1.36709 * 108.70336 * 180.12011 * 26 25 24 29 29 C 1.43987 * 105.37379 * 17.08015 * 28 26 25 30 30 O 1.36498 * 131.53548 * 179.97438 * 25 24 23 31 31 C 1.39034 * 119.94881 * 359.49246 * 13 12 11 32 32 H 0.97003 * 119.99902 * 359.97438 * 1 2 3 33 33 H 1.07994 * 119.98335 * 359.95721 * 10 9 7 34 34 H 1.08001 * 119.79493 * 179.97438 * 11 10 9 35 35 H 1.08004 * 119.82267 * 180.28093 * 12 11 10 36 36 H 1.09005 * 110.36934 * 274.74417 * 17 16 14 37 37 H 1.09002 * 110.37312 * 37.06521 * 17 16 14 38 38 H 1.08994 * 111.00284 * 155.07849 * 18 17 16 39 39 H 1.08992 * 111.00296 * 278.89676 * 18 17 16 40 40 H 1.09001 * 110.85308 * 206.30178 * 19 18 17 41 41 H 1.09001 * 110.69639 * 82.95601 * 19 18 17 42 42 H 1.07997 * 119.93103 * 0.02722 * 23 22 20 43 43 H 1.07991 * 119.98563 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.98531 * 359.97438 * 27 22 20 45 45 H 1.09005 * 110.57253 * 214.42984 * 29 28 26 46 46 H 1.08995 * 110.57430 * 91.70400 * 29 28 26 47 47 H 1.07999 * 120.20528 * 180.23088 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3841 2.1074 -1.3947 5 1 1.4965 2.6198 0.8031 6 1 3.5886 1.4119 0.5918 7 6 2.0080 -1.2119 -0.0005 8 1 2.9838 -1.2719 -0.4593 9 6 1.4371 -2.3584 0.5996 10 6 0.3209 -2.2314 1.4482 11 6 -0.2330 -3.3496 2.0306 12 6 0.2973 -4.6036 1.7836 13 6 1.4093 -4.7487 0.9475 14 6 1.9733 -6.0919 0.6928 15 8 3.0006 -6.2085 0.0537 16 7 1.3481 -7.1867 1.1693 17 6 1.8246 -8.5752 1.0341 18 6 1.1622 -9.3380 2.2085 19 6 -0.2347 -8.6605 2.2750 20 6 0.0778 -7.1942 1.9093 21 1 0.1740 -6.5981 2.8168 22 6 -1.0226 -6.6360 1.0441 23 6 -0.9312 -6.7273 -0.3324 24 6 -1.9383 -6.2174 -1.1304 25 6 -3.0420 -5.6121 -0.5517 26 6 -3.1338 -5.5196 0.8349 27 6 -2.1209 -6.0335 1.6283 28 8 -4.3042 -4.8901 1.1557 29 6 -5.1139 -4.9607 -0.0328 30 8 -4.1521 -5.0389 -1.1015 31 6 1.9805 -3.6299 0.3517 32 1 -0.4850 0.8401 0.0004 33 1 -0.1010 -1.2565 1.6427 34 1 -1.0890 -3.2476 2.6813 35 1 -0.1475 -5.4746 2.2418 36 1 1.5043 -8.9951 0.0805 37 1 2.9105 -8.6140 1.1210 38 1 1.0715 -10.4004 1.9826 39 1 1.7143 -9.1835 3.1355 40 1 -0.6507 -8.7269 3.2804 41 1 -0.9129 -9.1037 1.5459 42 1 -0.0716 -7.1988 -0.7853 43 1 -1.8645 -6.2904 -2.2053 44 1 -2.1897 -5.9635 2.7039 45 1 -5.7259 -4.0643 -0.1331 46 1 -5.7415 -5.8517 -0.0164 47 1 2.8368 -3.7376 -0.2975 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069458005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:43 Heat of formation + Delta-G solvation = -21.466336 kcal Electronic energy + Delta-G solvation = -33900.863928 eV Core-core repulsion = 29594.275701 eV Total energy + Delta-G solvation = -4306.588227 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.14964 -41.90412 -39.40414 -38.94317 -37.70125 -37.23579 -35.69730 -33.26686 -32.70657 -31.63260 -31.19300 -31.00761 -28.79729 -27.21351 -26.63819 -25.63567 -24.02577 -23.82490 -22.80937 -22.55948 -21.83210 -20.76292 -19.49703 -18.88985 -18.53665 -18.06447 -17.66726 -17.53009 -17.22729 -16.79438 -16.56905 -16.24544 -15.48268 -15.35206 -15.29509 -15.11050 -14.86223 -14.82725 -14.58092 -14.38893 -14.19025 -13.96932 -13.90636 -13.78648 -13.48125 -13.43488 -13.12214 -12.93155 -12.85846 -12.64332 -12.52287 -12.16019 -12.09519 -12.02555 -11.83469 -11.59216 -11.53101 -11.11913 -10.94106 -10.78779 -9.84080 -9.81977 -9.45299 -9.36112 -8.91802 -8.78497 -6.34393 0.10832 0.24558 0.44338 0.96978 1.33694 1.43053 1.52837 1.80779 1.97144 2.08751 2.17528 2.54403 2.58048 2.68766 3.45331 3.54225 3.64773 3.69255 3.72150 3.83445 3.98648 4.03292 4.09998 4.19583 4.25010 4.30385 4.33763 4.41764 4.52412 4.60653 4.68735 4.85841 4.92052 4.97097 5.01839 5.05114 5.06072 5.09169 5.16201 5.17276 5.22486 5.26948 5.32707 5.40242 5.47775 5.50296 5.51360 5.85964 5.98993 6.04264 6.15667 6.22862 6.46910 6.60175 6.85885 6.93821 7.19615 8.18499 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004332 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.764815 B = 6462.368211 C = 8917.713862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.047 3.953 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.073 3.927 10 C -0.179 4.179 11 C -0.105 4.105 12 C -0.222 4.222 13 C -0.114 4.114 14 C 0.579 3.421 15 O -0.589 6.589 16 N -0.606 5.606 17 C 0.093 3.907 18 C -0.117 4.117 19 C -0.114 4.114 20 C 0.160 3.840 21 H 0.111 0.889 22 C -0.066 4.066 23 C -0.101 4.101 24 C -0.109 4.109 25 C 0.011 3.989 26 C 0.028 3.972 27 C -0.087 4.087 28 O -0.321 6.321 29 C 0.204 3.796 30 O -0.332 6.332 31 C -0.200 4.200 32 H 0.293 0.707 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.175 0.825 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.113 0.887 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -16.759 6.779 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.171 4.171 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.086 0.914 9 C 0.071 3.929 10 C -0.199 4.199 11 C -0.123 4.123 12 C -0.240 4.240 13 C -0.117 4.117 14 C 0.372 3.628 15 O -0.471 6.471 16 N -0.338 5.338 17 C -0.029 4.029 18 C -0.154 4.154 19 C -0.151 4.151 20 C 0.057 3.943 21 H 0.128 0.872 22 C -0.067 4.067 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.034 4.034 26 C -0.016 4.016 27 C -0.106 4.106 28 O -0.238 6.238 29 C 0.093 3.907 30 O -0.249 6.249 31 C -0.221 4.221 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.191 0.809 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.130 0.870 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.341 -16.453 6.367 20.449 hybrid contribution 0.385 1.592 -0.969 1.903 sum -9.956 -14.860 5.398 18.684 Atomic orbital electron populations 1.69912 1.09245 1.31137 1.32452 1.26741 0.95187 1.04488 0.90651 0.85308 0.79518 0.75989 0.79638 1.18572 1.18149 1.18531 1.19764 1.03832 0.94829 1.34925 0.91364 1.17781 0.92085 0.91854 0.91211 1.21529 0.99561 0.98519 1.00273 1.20876 0.99073 0.92867 0.99453 1.22394 0.98145 0.99045 1.04386 1.19445 0.98844 0.91150 1.02237 1.18351 0.82501 0.84546 0.77442 1.90657 1.26491 1.87420 1.42558 1.48354 1.23161 1.06412 1.55844 1.22528 0.99887 0.79797 1.00654 1.22844 0.94823 1.00565 0.97217 1.22878 0.98082 0.89296 1.04879 1.21178 0.79951 1.00142 0.93003 0.87161 1.19718 0.94790 0.98222 0.93999 1.20616 0.97302 1.00647 0.93387 1.20141 0.92057 0.99458 1.01109 1.19930 0.92003 1.00089 0.91333 1.19830 0.90746 0.98694 0.92305 1.19935 0.91333 0.98530 1.00825 1.87365 1.25376 1.73820 1.37241 1.26076 0.88380 1.06501 0.69697 1.87310 1.23601 1.77462 1.36506 1.21001 1.03200 0.92435 1.05477 0.89636 0.87523 0.86600 0.80866 0.90943 0.91595 0.86710 0.89615 0.86275 0.89175 0.85739 0.84742 0.82095 0.83143 0.86971 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.58 11.04 21.83 0.24 -42.34 16 2 C 0.05 2.46 4.97 85.26 0.42 2.89 16 3 Si 0.98 39.26 29.65 68.60 2.03 41.30 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.51 -29.09 9.01 23.47 0.21 -28.88 16 8 H 0.07 3.92 7.99 -2.91 -0.02 3.89 16 9 C 0.07 4.19 5.65 -21.32 -0.12 4.07 16 10 C -0.18 -9.58 8.82 22.77 0.20 -9.38 16 11 C -0.10 -4.70 9.94 22.18 0.22 -4.48 16 12 C -0.22 -9.05 6.52 22.70 0.15 -8.90 16 13 C -0.11 -5.36 5.55 -20.13 -0.11 -5.47 16 14 C 0.58 24.54 6.91 86.80 0.60 25.14 16 15 O -0.59 -29.16 16.63 -3.87 -0.06 -29.22 16 16 N -0.61 -18.03 2.12 -806.27 -1.71 -19.74 16 17 C 0.09 2.03 6.90 86.86 0.60 2.63 16 18 C -0.12 -1.40 7.09 32.07 0.23 -1.17 16 19 C -0.11 -1.40 6.49 31.87 0.21 -1.19 16 20 C 0.16 3.59 2.37 44.60 0.11 3.69 16 21 H 0.11 2.42 6.04 -2.39 -0.01 2.41 16 22 C -0.07 -1.75 2.41 -19.86 -0.05 -1.80 16 23 C -0.10 -3.07 8.68 22.27 0.19 -2.88 16 24 C -0.11 -3.49 10.06 22.34 0.22 -3.26 16 25 C 0.01 0.35 7.15 22.59 0.16 0.51 16 26 C 0.03 0.86 7.15 22.59 0.16 1.03 16 27 C -0.09 -2.29 7.80 22.34 0.17 -2.11 16 28 O -0.32 -9.15 11.42 -78.53 -0.90 -10.05 16 29 C 0.20 4.50 8.88 113.37 1.01 5.50 16 30 O -0.33 -10.33 11.40 -76.04 -0.87 -11.20 16 31 C -0.20 -11.13 9.34 23.01 0.21 -10.92 16 32 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 33 H 0.11 5.90 5.85 -2.91 -0.02 5.88 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.18 5.49 1.38 -7.19 -0.01 5.48 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 37 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 1.03 7.84 -2.39 -0.02 1.01 16 42 H 0.12 3.86 7.13 -2.91 -0.02 3.84 16 43 H 0.13 3.98 8.06 -2.92 -0.02 3.96 16 44 H 0.16 3.23 8.01 -2.91 -0.02 3.21 16 45 H 0.15 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 4.58 7.65 -2.91 -0.02 4.56 16 Total: -1.00 -77.47 378.49 4.56 -72.91 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 1.02 Total: 33.31 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.80 Total: -34.98 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -1.47 Total: -62.08 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -1.83 Total: -50.46 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.30 kcal Total: -77.47 4.56 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069458005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.449 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds