Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99920 * 2 1 4 4 H 1.48503 * 109.46814 * 270.00046 * 3 2 1 5 5 H 1.48492 * 109.47183 * 30.00100 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00182 * 3 2 1 7 7 C 1.39935 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 190.82106 * 7 2 1 9 9 C 1.41436 * 120.00291 * 10.82172 * 7 2 1 10 10 C 1.40793 * 120.17824 * 209.23144 * 9 7 2 11 11 C 1.37712 * 120.04087 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41043 * 359.78746 * 11 10 9 13 13 C 1.39883 * 120.35947 * 0.47171 * 12 11 10 14 14 C 1.47887 * 120.02626 * 179.78908 * 13 12 11 15 15 O 1.21548 * 119.99820 * 173.30037 * 14 13 12 16 16 N 1.34774 * 119.99960 * 353.29834 * 14 13 12 17 17 C 1.47423 * 125.64792 * 178.17222 * 16 14 13 18 18 C 1.54912 * 104.82953 * 204.39032 * 17 16 14 19 19 C 1.55151 * 101.58410 * 322.98911 * 18 17 16 20 20 C 1.47023 * 125.64903 * 358.47505 * 16 14 13 21 21 H 1.09001 * 109.88060 * 59.26215 * 20 16 14 22 22 C 1.50701 * 109.88566 * 298.25165 * 20 16 14 23 23 C 1.38255 * 119.92796 * 332.34355 * 22 20 16 24 24 C 1.38228 * 120.14549 * 179.97438 * 23 22 20 25 25 C 1.38553 * 120.02954 * 0.02562 * 24 23 22 26 26 C 1.39264 * 119.82453 * 359.97343 * 25 24 23 27 27 C 1.38236 * 119.93120 * 152.06738 * 22 20 16 28 28 O 1.36499 * 108.63648 * 179.97438 * 26 25 24 29 29 C 1.43980 * 105.49008 * 342.72397 * 28 26 25 30 30 O 1.36503 * 131.53269 * 179.97438 * 25 24 23 31 31 C 1.39038 * 119.94847 * 359.50579 * 13 12 11 32 32 H 0.97001 * 120.00337 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.97841 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.79131 * 180.02562 * 11 10 9 35 35 H 1.07999 * 119.82199 * 180.22984 * 12 11 10 36 36 H 1.09003 * 110.36614 * 323.22613 * 17 16 14 37 37 H 1.09004 * 110.37042 * 85.55407 * 17 16 14 38 38 H 1.09000 * 111.00574 * 204.91277 * 18 17 16 39 39 H 1.09003 * 111.00368 * 81.06961 * 18 17 16 40 40 H 1.08999 * 110.71815 * 277.13868 * 19 18 17 41 41 H 1.08996 * 110.72162 * 153.86332 * 19 18 17 42 42 H 1.08005 * 119.92476 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.98916 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.98106 * 0.02562 * 27 22 20 45 45 H 1.08995 * 110.57543 * 268.55320 * 29 28 26 46 46 H 1.09006 * 110.57349 * 145.67652 * 29 28 26 47 47 H 1.07994 * 120.20300 * 180.27869 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0735 -1.2202 0.1761 9 6 1.3196 -2.4260 -0.2289 10 6 1.7902 -3.6248 0.3401 11 6 1.1175 -4.8052 0.1153 12 6 -0.0250 -4.8227 -0.6652 13 6 -0.5044 -3.6425 -1.2432 14 6 -1.7236 -3.6704 -2.0799 15 8 -2.2091 -2.6309 -2.4812 16 7 -2.2961 -4.8485 -2.3974 17 6 -3.5288 -5.0193 -3.1877 18 6 -4.0913 -6.3955 -2.7525 19 6 -2.7897 -7.2188 -2.5649 20 6 -1.7983 -6.1758 -2.0076 21 1 -1.7534 -6.2505 -0.9211 22 6 -0.4284 -6.4018 -2.5936 23 6 -0.0657 -5.7644 -3.7656 24 6 1.1898 -5.9680 -4.3068 25 6 2.0883 -6.8128 -3.6754 26 6 1.7230 -7.4549 -2.4948 27 6 0.4650 -7.2416 -1.9552 28 8 2.7697 -8.2237 -2.0745 29 6 3.6281 -8.3650 -3.2218 30 8 3.3641 -7.1788 -3.9944 31 6 0.1627 -2.4422 -1.0256 32 1 -0.4851 0.8400 0.0004 33 1 2.6787 -3.6184 0.9539 34 1 1.4817 -5.7223 0.5540 35 1 -0.5472 -5.7531 -0.8322 36 1 -4.2412 -4.2276 -2.9553 37 1 -3.2989 -5.0232 -4.2532 38 1 -4.7171 -6.8266 -3.5339 39 1 -4.6408 -6.3141 -1.8147 40 1 -2.4405 -7.6110 -3.5201 41 1 -2.9437 -8.0257 -1.8485 42 1 -0.7650 -5.1058 -4.2594 43 1 1.4703 -5.4691 -5.2227 44 1 0.1804 -7.7351 -1.0376 45 1 3.3657 -9.2581 -3.7888 46 1 4.6739 -8.3977 -2.9160 47 1 -0.2064 -1.5279 -1.4662 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069458007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = -2.505182 kcal Electronic energy + Delta-G solvation = -33963.657143 eV Core-core repulsion = 29657.891134 eV Total energy + Delta-G solvation = -4305.766009 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 5.20 seconds Orbital eigenvalues (eV) -42.09648 -40.58698 -37.91261 -37.28163 -36.34620 -36.16352 -33.70998 -32.00555 -31.44320 -30.13549 -29.61689 -29.29903 -27.77224 -25.68219 -25.27052 -24.28163 -22.87186 -22.58237 -21.40970 -21.00832 -20.59411 -19.12399 -17.85254 -17.72089 -17.47943 -16.80584 -16.59730 -15.86201 -15.72918 -15.44650 -14.98567 -14.60744 -14.35869 -14.12841 -13.89206 -13.73976 -13.55703 -13.40911 -13.06294 -12.92605 -12.89108 -12.76800 -12.70606 -12.46407 -12.17445 -12.04970 -11.68296 -11.54398 -11.23986 -11.13287 -11.11118 -10.93093 -10.84141 -10.60868 -10.42477 -10.17466 -9.92942 -9.49639 -9.19222 -8.99656 -8.59600 -8.41817 -7.87394 -7.52019 -7.30233 -6.66283 -4.34620 1.27069 1.40184 2.26027 2.82381 2.89932 3.12112 3.15121 3.21252 3.29478 3.53354 3.71692 3.85242 3.99020 4.43934 4.57880 4.61585 4.65365 4.66393 4.79417 4.88203 5.01175 5.11451 5.26429 5.31005 5.36397 5.42136 5.53937 5.64871 5.65414 5.68383 5.75301 5.84816 5.93921 6.08099 6.14154 6.18349 6.20632 6.35298 6.38371 6.47564 6.57898 6.66086 6.80153 7.07361 7.11230 7.24945 7.30340 7.46415 7.72846 7.84215 7.95018 8.08212 8.26108 8.58598 8.86725 8.90671 8.93803 10.28067 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.004239 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.171844 B = 6603.733240 C = 8814.391806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.097 3.903 10 C -0.201 4.201 11 C -0.101 4.101 12 C -0.236 4.236 13 C -0.128 4.128 14 C 0.582 3.418 15 O -0.540 6.540 16 N -0.618 5.618 17 C 0.105 3.895 18 C -0.132 4.132 19 C -0.127 4.127 20 C 0.171 3.829 21 H 0.104 0.896 22 C -0.062 4.062 23 C -0.091 4.091 24 C -0.093 4.093 25 C 0.027 3.973 26 C 0.037 3.963 27 C -0.085 4.085 28 O -0.309 6.309 29 C 0.214 3.786 30 O -0.311 6.311 31 C -0.084 4.084 32 H 0.282 0.718 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.127 0.873 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -17.398 -7.020 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.095 3.905 10 C -0.221 4.221 11 C -0.120 4.120 12 C -0.255 4.255 13 C -0.131 4.131 14 C 0.376 3.624 15 O -0.417 6.417 16 N -0.353 5.353 17 C -0.018 4.018 18 C -0.171 4.171 19 C -0.165 4.165 20 C 0.067 3.933 21 H 0.122 0.878 22 C -0.063 4.063 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.017 4.017 26 C -0.007 4.007 27 C -0.104 4.104 28 O -0.226 6.226 29 C 0.102 3.898 30 O -0.227 6.227 31 C -0.105 4.105 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.096 0.904 46 H 0.144 0.856 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.214 -16.554 -7.140 18.313 hybrid contribution 0.815 0.724 0.147 1.100 sum -2.400 -15.830 -6.993 17.472 Atomic orbital electron populations 1.69763 1.07310 1.29323 1.35709 1.25897 0.94840 1.01234 0.92558 0.86268 0.80245 0.80674 0.79256 1.19336 1.20281 1.18731 1.19534 0.95899 0.90351 1.43674 0.90424 1.17567 0.91552 0.92407 0.88978 1.21185 1.02503 0.93578 1.04851 1.20401 0.96024 0.96361 0.99192 1.21891 1.00470 0.97417 1.05725 1.19341 0.95749 0.95635 1.02425 1.18665 0.83834 0.80936 0.78969 1.90716 1.64593 1.31579 1.54837 1.48436 1.26704 1.05046 1.55154 1.22161 0.86893 0.97363 0.95357 1.22796 0.96946 0.94909 1.02401 1.22783 0.94292 0.97084 1.02293 1.20858 0.89571 0.83501 0.99379 0.87848 1.19576 0.95554 0.96302 0.94879 1.20595 0.95473 0.99118 0.95735 1.19960 0.91574 0.98978 1.00696 1.19710 0.84729 1.01367 0.95931 1.19521 0.90098 0.96858 0.94265 1.19642 0.89036 1.00907 1.00799 1.87340 1.31966 1.68732 1.34512 1.25537 0.96822 0.87908 0.79538 1.87350 1.27088 1.43373 1.64937 1.21633 0.96030 0.95633 0.97163 0.90717 0.88944 0.89339 0.85135 0.90398 0.91859 0.89912 0.90464 0.90168 0.89706 0.85072 0.85139 0.84894 0.90368 0.85583 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.70 10.87 55.55 0.60 -21.09 16 2 C 0.07 1.88 5.25 -17.34 -0.09 1.78 16 3 Si 0.91 19.50 29.57 -169.99 -5.03 14.47 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.61 9.06 -37.73 -0.34 -12.96 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 9 C 0.10 2.64 5.54 -106.87 -0.59 2.04 16 10 C -0.20 -4.94 9.78 -38.81 -0.38 -5.32 16 11 C -0.10 -2.21 9.86 -39.73 -0.39 -2.60 16 12 C -0.24 -4.90 6.47 -38.92 -0.25 -5.16 16 13 C -0.13 -3.03 5.55 -105.04 -0.58 -3.61 16 14 C 0.58 12.66 6.99 -12.31 -0.09 12.58 16 15 O -0.54 -13.57 16.62 5.32 0.09 -13.48 16 16 N -0.62 -9.98 2.12 -168.51 -0.36 -10.34 16 17 C 0.10 1.33 6.90 -2.53 -0.02 1.31 16 18 C -0.13 -1.17 7.08 -24.58 -0.17 -1.34 16 19 C -0.13 -1.13 6.47 -24.90 -0.16 -1.29 16 20 C 0.17 2.23 2.38 -68.10 -0.16 2.07 16 21 H 0.10 1.39 6.07 -51.93 -0.32 1.08 16 22 C -0.06 -0.87 2.42 -104.62 -0.25 -1.12 16 23 C -0.09 -1.36 8.70 -39.58 -0.34 -1.71 16 24 C -0.09 -1.40 10.06 -39.47 -0.40 -1.80 16 25 C 0.03 0.41 7.15 -39.08 -0.28 0.13 16 26 C 0.04 0.55 7.15 -39.09 -0.28 0.27 16 27 C -0.08 -1.18 7.64 -39.47 -0.30 -1.48 16 28 O -0.31 -4.37 11.40 -45.69 -0.52 -4.89 16 29 C 0.21 2.33 8.89 101.05 0.90 3.22 16 30 O -0.31 -4.54 11.40 -45.70 -0.52 -5.06 16 31 C -0.08 -2.29 8.20 -38.44 -0.32 -2.60 16 32 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 33 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.13 2.24 1.36 -56.66 -0.08 2.16 16 36 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.67 7.85 -51.93 -0.41 0.27 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.13 1.99 7.19 -52.48 -0.38 1.62 16 43 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.13 1.58 7.98 -52.49 -0.42 1.17 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.13 3.90 5.85 -52.49 -0.31 3.59 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -32.99 378.39 -10.21 -43.20 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.67 Total: 9.07 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -4.50 Total: -17.59 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.25 Total: -31.43 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.95 Total: -23.43 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.99 -10.21 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069458007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.693 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.20 seconds