Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99920 * 2 1 4 4 H 1.48503 * 109.46814 * 270.00046 * 3 2 1 5 5 H 1.48492 * 109.47183 * 30.00100 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00182 * 3 2 1 7 7 C 1.39935 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 190.82106 * 7 2 1 9 9 C 1.41436 * 120.00291 * 10.82172 * 7 2 1 10 10 C 1.40793 * 120.17824 * 209.23144 * 9 7 2 11 11 C 1.37712 * 120.04087 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41043 * 359.78746 * 11 10 9 13 13 C 1.39883 * 120.35947 * 0.47171 * 12 11 10 14 14 C 1.47887 * 120.02626 * 179.78908 * 13 12 11 15 15 O 1.21548 * 119.99820 * 173.30037 * 14 13 12 16 16 N 1.34774 * 119.99960 * 353.29834 * 14 13 12 17 17 C 1.47423 * 125.64792 * 178.17222 * 16 14 13 18 18 C 1.54912 * 104.82953 * 204.39032 * 17 16 14 19 19 C 1.55151 * 101.58410 * 322.98911 * 18 17 16 20 20 C 1.47023 * 125.64903 * 358.47505 * 16 14 13 21 21 H 1.09001 * 109.88060 * 59.26215 * 20 16 14 22 22 C 1.50701 * 109.88566 * 298.25165 * 20 16 14 23 23 C 1.38255 * 119.92796 * 332.34355 * 22 20 16 24 24 C 1.38228 * 120.14549 * 179.97438 * 23 22 20 25 25 C 1.38553 * 120.02954 * 0.02562 * 24 23 22 26 26 C 1.39264 * 119.82453 * 359.97343 * 25 24 23 27 27 C 1.38236 * 119.93120 * 152.06738 * 22 20 16 28 28 O 1.36499 * 108.63648 * 179.97438 * 26 25 24 29 29 C 1.43980 * 105.49008 * 342.72397 * 28 26 25 30 30 O 1.36503 * 131.53269 * 179.97438 * 25 24 23 31 31 C 1.39038 * 119.94847 * 359.50579 * 13 12 11 32 32 H 0.97001 * 120.00337 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.97841 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.79131 * 180.02562 * 11 10 9 35 35 H 1.07999 * 119.82199 * 180.22984 * 12 11 10 36 36 H 1.09003 * 110.36614 * 323.22613 * 17 16 14 37 37 H 1.09004 * 110.37042 * 85.55407 * 17 16 14 38 38 H 1.09000 * 111.00574 * 204.91277 * 18 17 16 39 39 H 1.09003 * 111.00368 * 81.06961 * 18 17 16 40 40 H 1.08999 * 110.71815 * 277.13868 * 19 18 17 41 41 H 1.08996 * 110.72162 * 153.86332 * 19 18 17 42 42 H 1.08005 * 119.92476 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.98916 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.98106 * 0.02562 * 27 22 20 45 45 H 1.08995 * 110.57543 * 268.55320 * 29 28 26 46 46 H 1.09006 * 110.57349 * 145.67652 * 29 28 26 47 47 H 1.07994 * 120.20300 * 180.27869 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0735 -1.2202 0.1761 9 6 1.3196 -2.4260 -0.2289 10 6 1.7902 -3.6248 0.3401 11 6 1.1175 -4.8052 0.1153 12 6 -0.0250 -4.8227 -0.6652 13 6 -0.5044 -3.6425 -1.2432 14 6 -1.7236 -3.6704 -2.0799 15 8 -2.2091 -2.6309 -2.4812 16 7 -2.2961 -4.8485 -2.3974 17 6 -3.5288 -5.0193 -3.1877 18 6 -4.0913 -6.3955 -2.7525 19 6 -2.7897 -7.2188 -2.5649 20 6 -1.7983 -6.1758 -2.0076 21 1 -1.7534 -6.2505 -0.9211 22 6 -0.4284 -6.4018 -2.5936 23 6 -0.0657 -5.7644 -3.7656 24 6 1.1898 -5.9680 -4.3068 25 6 2.0883 -6.8128 -3.6754 26 6 1.7230 -7.4549 -2.4948 27 6 0.4650 -7.2416 -1.9552 28 8 2.7697 -8.2237 -2.0745 29 6 3.6281 -8.3650 -3.2218 30 8 3.3641 -7.1788 -3.9944 31 6 0.1627 -2.4422 -1.0256 32 1 -0.4851 0.8400 0.0004 33 1 2.6787 -3.6184 0.9539 34 1 1.4817 -5.7223 0.5540 35 1 -0.5472 -5.7531 -0.8322 36 1 -4.2412 -4.2276 -2.9553 37 1 -3.2989 -5.0232 -4.2532 38 1 -4.7171 -6.8266 -3.5339 39 1 -4.6408 -6.3141 -1.8147 40 1 -2.4405 -7.6110 -3.5201 41 1 -2.9437 -8.0257 -1.8485 42 1 -0.7650 -5.1058 -4.2594 43 1 1.4703 -5.4691 -5.2227 44 1 0.1804 -7.7351 -1.0376 45 1 3.3657 -9.2581 -3.7888 46 1 4.6739 -8.3977 -2.9160 47 1 -0.2064 -1.5279 -1.4662 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069458007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -21.412315 kcal Electronic energy + Delta-G solvation = -33964.477018 eV Core-core repulsion = 29657.891134 eV Total energy + Delta-G solvation = -4306.585884 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 7.88 seconds Orbital eigenvalues (eV) -43.15331 -41.89812 -39.39285 -38.93408 -37.68393 -37.22334 -35.58550 -33.33709 -32.68917 -31.32896 -31.26032 -31.07624 -28.80031 -27.17753 -26.61879 -25.62398 -24.03050 -23.85131 -22.86241 -22.47388 -21.88671 -20.59738 -19.48524 -18.87010 -18.52051 -18.10932 -17.65857 -17.40589 -17.28487 -16.73781 -16.60497 -16.18307 -15.46305 -15.35050 -15.28066 -15.04920 -14.82044 -14.80892 -14.53805 -14.37862 -14.21433 -13.95338 -13.89533 -13.73221 -13.44825 -13.42662 -13.29366 -12.89670 -12.82263 -12.58468 -12.41203 -12.14795 -12.08933 -11.92291 -11.81826 -11.61859 -11.52168 -11.18097 -11.10081 -10.73099 -9.83707 -9.78854 -9.39395 -9.25831 -8.88764 -8.59252 -6.38710 0.11226 0.25555 0.43651 1.04275 1.33566 1.45884 1.48278 1.81990 1.98741 2.08720 2.19281 2.56206 2.59231 2.81596 3.46249 3.55108 3.65596 3.68833 3.72797 3.86273 3.98950 4.05084 4.11461 4.20202 4.25340 4.31088 4.34830 4.45087 4.53042 4.61333 4.69229 4.83101 4.87195 4.93675 5.03154 5.06409 5.09586 5.10336 5.16192 5.20337 5.23578 5.27262 5.35237 5.40429 5.48927 5.51637 5.55682 5.86758 5.96539 6.06551 6.17465 6.31698 6.43470 6.64042 6.90790 6.96192 7.24274 8.36500 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.004239 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.171844 B = 6603.733240 C = 8814.391806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.503 4.503 8 H 0.077 0.923 9 C 0.065 3.935 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.210 4.210 13 C -0.136 4.136 14 C 0.577 3.423 15 O -0.589 6.589 16 N -0.608 5.608 17 C 0.092 3.908 18 C -0.117 4.117 19 C -0.113 4.113 20 C 0.159 3.841 21 H 0.109 0.891 22 C -0.067 4.067 23 C -0.102 4.102 24 C -0.108 4.108 25 C 0.012 3.988 26 C 0.031 3.969 27 C -0.086 4.086 28 O -0.319 6.319 29 C 0.204 3.796 30 O -0.331 6.331 31 C -0.122 4.122 32 H 0.283 0.717 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.176 0.824 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.110 0.890 46 H 0.154 0.846 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 -21.361 -6.690 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.534 4.534 8 H 0.095 0.905 9 C 0.063 3.937 10 C -0.229 4.229 11 C -0.119 4.119 12 C -0.228 4.228 13 C -0.139 4.139 14 C 0.369 3.631 15 O -0.471 6.471 16 N -0.340 5.340 17 C -0.029 4.029 18 C -0.155 4.155 19 C -0.150 4.150 20 C 0.057 3.943 21 H 0.126 0.874 22 C -0.068 4.068 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.033 4.033 26 C -0.013 4.013 27 C -0.105 4.105 28 O -0.236 6.236 29 C 0.094 3.906 30 O -0.247 6.247 31 C -0.142 4.142 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.192 0.808 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.153 0.847 44 H 0.180 0.820 45 H 0.128 0.872 46 H 0.172 0.828 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.587 -20.604 -6.814 21.996 hybrid contribution 0.929 1.677 -0.055 1.918 sum -2.658 -18.927 -6.870 20.310 Atomic orbital electron populations 1.69884 1.08965 1.30136 1.37330 1.26783 0.95527 1.04657 0.91578 0.85188 0.79104 0.76017 0.79295 1.19150 1.19275 1.17654 1.19789 0.96053 0.91606 1.45927 0.90498 1.17876 0.92223 0.93666 0.89892 1.21441 1.02967 0.93849 1.04688 1.20825 0.95678 0.96773 0.98627 1.22492 0.99530 0.98015 1.02745 1.19650 0.96278 0.95475 1.02506 1.18427 0.83580 0.82081 0.78984 1.90680 1.65798 1.33852 1.56761 1.48367 1.27164 1.04629 1.53832 1.22511 0.85156 0.99711 0.95544 1.22805 0.97184 0.91759 1.03743 1.22825 0.92334 0.96242 1.03623 1.21180 0.90444 0.82944 0.99775 0.87360 1.19697 0.96144 0.96342 0.94612 1.20606 0.95474 0.99415 0.96509 1.20117 0.91920 0.99367 1.01277 1.19904 0.85200 1.01640 0.96507 1.19729 0.90724 0.96843 0.94036 1.19925 0.88467 1.00552 1.01565 1.87311 1.31927 1.68487 1.35878 1.26106 0.97945 0.87679 0.78884 1.87319 1.26669 1.44998 1.65763 1.21411 0.97715 0.95883 0.99222 0.90618 0.88170 0.85484 0.80773 0.92087 0.90913 0.86661 0.89808 0.89028 0.86237 0.86040 0.84719 0.82029 0.87223 0.82837 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.77 10.87 21.82 0.24 -48.53 16 2 C 0.03 1.51 5.25 85.25 0.45 1.96 16 3 Si 0.98 41.80 29.57 68.60 2.03 43.83 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.91 9.06 23.47 0.21 -28.70 16 8 H 0.08 4.22 7.87 -2.91 -0.02 4.20 16 9 C 0.07 3.73 5.54 -21.32 -0.12 3.61 16 10 C -0.21 -10.40 9.78 22.77 0.22 -10.18 16 11 C -0.10 -4.22 9.86 22.18 0.22 -4.00 16 12 C -0.21 -8.41 6.47 22.70 0.15 -8.26 16 13 C -0.14 -6.60 5.55 -20.13 -0.11 -6.71 16 14 C 0.58 25.88 6.99 86.80 0.61 26.49 16 15 O -0.59 -31.55 16.62 -3.87 -0.06 -31.61 16 16 N -0.61 -19.02 2.12 -805.34 -1.70 -20.72 16 17 C 0.09 2.19 6.90 86.86 0.60 2.79 16 18 C -0.12 -1.54 7.08 31.99 0.23 -1.32 16 19 C -0.11 -1.43 6.47 31.78 0.21 -1.22 16 20 C 0.16 3.62 2.38 44.59 0.11 3.73 16 21 H 0.11 2.41 6.07 -2.39 -0.01 2.40 16 22 C -0.07 -1.70 2.42 -19.86 -0.05 -1.75 16 23 C -0.10 -2.98 8.70 22.27 0.19 -2.79 16 24 C -0.11 -3.24 10.06 22.34 0.22 -3.01 16 25 C 0.01 0.35 7.15 22.59 0.16 0.51 16 26 C 0.03 0.85 7.15 22.59 0.16 1.02 16 27 C -0.09 -2.09 7.64 22.34 0.17 -1.92 16 28 O -0.32 -8.05 11.40 -76.04 -0.87 -8.92 16 29 C 0.20 3.87 8.89 113.37 1.01 4.88 16 30 O -0.33 -9.21 11.40 -76.09 -0.87 -10.07 16 31 C -0.12 -7.03 8.20 23.01 0.19 -6.84 16 32 H 0.28 15.27 8.30 -92.71 -0.77 14.50 16 33 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.18 5.40 1.36 -6.83 -0.01 5.39 16 36 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.05 7.85 -2.39 -0.02 1.03 16 41 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 3.74 7.19 -2.91 -0.02 3.72 16 43 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.16 2.95 7.98 -2.91 -0.02 2.93 16 45 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.15 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.10 6.14 5.85 -2.91 -0.02 6.12 16 Total: -1.00 -80.14 378.39 4.60 -75.54 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 1.02 Total: 32.21 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 4.82 Total: -31.71 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.47 Total: -69.26 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.80 Total: -50.60 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -80.14 4.60 -75.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069458007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.123 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.88 seconds