Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00026 * 2 1 4 4 H 1.48505 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47444 * 300.00198 * 3 2 1 6 6 H 1.48507 * 109.46852 * 60.00276 * 3 2 1 7 7 C 1.37877 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00182 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99744 * 263.45993 * 10 9 7 12 12 C 1.50703 * 109.46917 * 269.99754 * 11 10 9 13 13 C 1.38225 * 119.61432 * 95.00253 * 12 11 10 14 14 C 1.38631 * 119.15940 * 179.97438 * 13 12 11 15 15 C 1.38679 * 118.41934 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16069 * 359.97438 * 15 14 13 17 17 N 1.31850 * 119.61727 * 274.72267 * 12 11 10 18 18 C 1.34774 * 120.00041 * 83.45791 * 10 9 7 19 19 O 1.21558 * 119.99729 * 183.79215 * 18 10 9 20 20 C 1.47592 * 120.00159 * 3.79523 * 18 10 9 21 21 N 1.29022 * 125.86328 * 353.75008 * 20 18 10 22 22 O 1.41382 * 112.88820 * 179.70902 * 21 20 18 23 23 C 1.44205 * 107.59448 * 17.48703 * 22 21 20 24 24 H 1.09001 * 110.97624 * 92.75941 * 23 22 21 25 25 C 1.50706 * 110.97564 * 216.50023 * 23 22 21 26 26 C 1.38227 * 119.99820 * 215.49473 * 25 23 22 27 27 C 1.38237 * 119.99981 * 180.27772 * 26 25 23 28 28 C 1.38241 * 119.99599 * 359.46565 * 27 26 25 29 29 C 1.38227 * 119.99972 * 0.55814 * 28 27 26 30 30 C 1.38237 * 119.99719 * 35.51695 * 25 23 22 31 31 C 1.51757 * 125.85000 * 173.81795 * 20 18 10 32 32 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47281 * 60.00262 * 9 7 2 34 34 H 1.09004 * 109.46901 * 299.99893 * 9 7 2 35 35 H 1.09001 * 109.47277 * 29.99816 * 11 10 9 36 36 H 1.09000 * 109.46692 * 149.99689 * 11 10 9 37 37 H 1.08002 * 120.42281 * 359.95116 * 13 12 11 38 38 H 1.07996 * 120.78998 * 180.02562 * 14 13 12 39 39 H 1.07994 * 120.41825 * 180.02562 * 15 14 13 40 40 H 1.08000 * 119.61052 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.00607 * 0.02562 * 26 25 23 42 42 H 1.08004 * 120.00329 * 179.72712 * 27 26 25 43 43 H 1.07998 * 119.99552 * 180.27940 * 28 27 26 44 44 H 1.07998 * 119.99967 * 179.72186 * 29 28 27 45 45 H 1.07998 * 120.00040 * 0.02562 * 30 25 23 46 46 H 1.08998 * 110.82400 * 46.33737 * 31 20 18 47 47 H 1.09000 * 110.78077 * 282.84781 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.5692 -4.2634 -1.2611 12 6 1.6218 -5.4038 -1.5314 13 6 0.5179 -5.1983 -2.3375 14 6 -0.3471 -6.2541 -2.5803 15 6 -0.0684 -7.4825 -2.0002 16 6 1.0545 -7.6125 -1.2054 17 7 1.8585 -6.5873 -1.0007 18 6 2.7420 -4.0385 1.1590 19 8 3.5833 -4.9159 1.1522 20 6 2.3108 -3.4396 2.4372 21 7 1.5164 -2.4315 2.5696 22 8 1.2828 -2.0895 3.9214 23 6 2.3192 -2.7056 4.7124 24 1 3.1573 -2.0237 4.8569 25 6 1.7778 -3.1788 6.0368 26 6 2.5653 -3.1075 7.1706 27 6 2.0707 -3.5468 8.3844 28 6 0.7846 -4.0471 8.4664 29 6 -0.0027 -4.1188 7.3325 30 6 0.4938 -3.6844 6.1177 31 6 2.7269 -3.9030 3.8210 32 1 -0.4849 0.8400 0.0004 33 1 0.6241 -2.5568 -0.8903 34 1 0.6247 -2.5571 0.8897 35 1 2.5086 -3.5401 -2.0743 36 1 3.5874 -4.6459 -1.1901 37 1 0.3314 -4.2275 -2.7724 38 1 -1.2173 -6.1230 -3.2064 39 1 -0.7203 -8.3269 -2.1681 40 1 1.2787 -8.5659 -0.7504 41 1 3.5685 -2.7125 7.1075 42 1 2.6876 -3.4953 9.2695 43 1 0.3966 -4.3861 9.4156 44 1 -1.0058 -4.5138 7.3957 45 1 -0.1212 -3.7407 5.2317 46 1 3.8029 -4.0705 3.8663 47 1 2.1817 -4.8022 4.1079 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069511908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = 72.025023 kcal Electronic energy + Delta-G solvation = -32391.924389 eV Core-core repulsion = 28121.683003 eV Total energy + Delta-G solvation = -4270.241386 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -40.43292 -40.01384 -39.02970 -38.21629 -35.28812 -33.15597 -32.62084 -32.23840 -32.19836 -31.27005 -30.95226 -28.77948 -27.60729 -26.45999 -23.99807 -23.50263 -23.30066 -22.65797 -22.54944 -21.27842 -20.97148 -18.42097 -17.19544 -16.93628 -16.81468 -16.29627 -16.07684 -15.97157 -15.65357 -15.36337 -15.16279 -14.78569 -14.58843 -14.36408 -14.17943 -13.58051 -13.51513 -13.41336 -13.18551 -13.10439 -12.83644 -12.70939 -12.58340 -12.28504 -12.17272 -11.83316 -11.66078 -11.49612 -11.36645 -11.15486 -11.05992 -10.90672 -10.83561 -10.23640 -9.84650 -9.77969 -9.68291 -9.49021 -9.20897 -9.16734 -8.98485 -8.85703 -8.76409 -8.42140 -7.87746 -6.07730 -4.11761 1.19491 1.23783 1.33864 1.46595 1.69275 3.23034 3.28180 3.37039 3.39618 3.59684 3.71460 3.74876 4.10445 4.40078 4.53743 4.56901 4.68460 4.81316 4.87331 4.92247 4.96157 4.96782 5.04702 5.08308 5.17430 5.20612 5.29154 5.31708 5.43862 5.52543 5.68214 5.71985 5.76457 5.84986 5.86646 5.92705 5.98329 6.06821 6.14932 6.30412 6.34248 6.36343 6.43800 6.55919 6.61390 6.86231 6.90448 7.32277 7.45994 7.69938 7.83610 8.10637 8.13651 8.25643 8.70916 8.92070 9.53104 11.00431 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.006879 B = 0.003677 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4069.374437 B = 7612.933288 C =10426.151079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.226 3.774 10 N -0.572 5.572 11 C 0.167 3.833 12 C 0.117 3.883 13 C -0.153 4.153 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.092 3.908 17 N -0.460 5.460 18 C 0.588 3.412 19 O -0.538 6.538 20 C 0.025 3.975 21 N -0.159 5.159 22 O -0.196 6.196 23 C 0.080 3.920 24 H 0.096 0.904 25 C -0.081 4.081 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.093 4.093 31 C -0.117 4.117 32 H 0.262 0.738 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.106 0.894 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -11.487 6.666 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.107 3.893 10 N -0.303 5.303 11 C 0.043 3.957 12 C -0.022 4.022 13 C -0.174 4.174 14 C -0.106 4.106 15 C -0.200 4.200 16 C -0.065 4.065 17 N -0.169 5.169 18 C 0.373 3.627 19 O -0.414 6.414 20 C -0.169 4.169 21 N 0.095 4.905 22 O -0.215 6.215 23 C 0.021 3.979 24 H 0.113 0.887 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.139 4.139 30 C -0.111 4.111 31 C -0.156 4.156 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.124 0.876 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.281 -11.054 6.742 12.951 hybrid contribution -0.048 0.653 -0.016 0.655 sum 0.234 -10.400 6.727 12.388 Atomic orbital electron populations 1.69919 1.05894 1.26867 1.49413 1.24784 0.94693 0.98773 0.94581 0.86565 0.80115 0.83854 0.77634 1.19861 1.21005 1.20853 1.21277 0.93075 0.90128 1.51953 0.92489 1.19975 0.87652 0.82055 0.99659 1.48159 1.44325 1.33585 1.04186 1.20233 0.97376 0.90789 0.87298 1.21815 0.94761 0.93104 0.92530 1.22126 0.95202 1.00323 0.99714 1.21562 0.98589 0.92722 0.97731 1.22106 0.99424 0.98463 0.99998 1.22756 0.90891 0.97552 0.95336 1.67617 1.30142 0.99431 1.19758 1.16886 0.81982 0.81813 0.82010 1.90761 1.32609 1.31468 1.86567 1.25903 0.99581 0.94996 0.96411 1.79539 1.08938 1.07803 0.94197 1.91389 1.47355 1.70360 1.12407 1.22468 0.91973 0.93565 0.89887 0.88672 1.19603 0.95174 0.99832 0.93574 1.20957 0.99755 0.99752 0.91947 1.21080 0.95993 0.99607 0.97419 1.21174 0.94478 0.99712 0.98413 1.21161 0.99964 1.00155 0.92628 1.21082 0.95008 0.96672 0.98339 1.22765 1.04975 0.99582 0.88304 0.92777 0.94596 0.91607 0.88166 0.88617 0.84335 0.85026 0.85257 0.83192 0.85767 0.85939 0.86142 0.85911 0.85488 0.87609 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 13.29 55.43 0.74 -23.88 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -13.68 8.39 -34.44 -0.29 -13.97 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.23 5.38 4.77 -5.19 -0.02 5.36 16 10 N -0.57 -12.11 2.46 -177.64 -0.44 -12.55 16 11 C 0.17 3.04 5.71 -5.19 -0.03 3.01 16 12 C 0.12 1.99 6.36 -82.59 -0.53 1.47 16 13 C -0.15 -2.27 9.72 -39.44 -0.38 -2.66 16 14 C -0.08 -1.00 10.18 -39.27 -0.40 -1.40 16 15 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 16 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 17 N -0.46 -7.98 10.27 -9.47 -0.10 -8.08 16 18 C 0.59 12.61 7.61 -12.45 -0.09 12.52 16 19 O -0.54 -11.94 16.52 5.31 0.09 -11.85 16 20 C 0.03 0.51 7.00 -79.44 -0.56 -0.04 16 21 N -0.16 -3.55 8.25 35.30 0.29 -3.25 16 22 O -0.20 -3.99 11.50 -11.36 -0.13 -4.12 16 23 C 0.08 1.27 4.00 -26.97 -0.11 1.16 16 24 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 25 C -0.08 -1.12 5.01 -104.62 -0.52 -1.64 16 26 C -0.11 -1.23 9.69 -39.59 -0.38 -1.61 16 27 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 28 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 29 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 30 C -0.09 -1.27 9.31 -39.58 -0.37 -1.64 16 31 C -0.12 -1.87 6.44 -26.45 -0.17 -2.04 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.04 0.88 8.02 -51.93 -0.42 0.46 16 34 H 0.07 1.71 5.38 -51.93 -0.28 1.43 16 35 H 0.10 1.66 7.97 -51.93 -0.41 1.25 16 36 H 0.10 1.76 7.37 -51.93 -0.38 1.38 16 37 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.13 1.86 7.71 -52.49 -0.40 1.45 16 46 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.10 1.49 7.85 -51.93 -0.41 1.08 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -32.27 405.34 -10.28 -42.55 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.07 Total: 5.05 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -5.74 Total: -6.07 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.49 Total: -47.75 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.04 Total: -15.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.27 -10.28 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069511908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.577 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds