Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00026 * 2 1 4 4 H 1.48505 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47444 * 300.00198 * 3 2 1 6 6 H 1.48507 * 109.46852 * 60.00276 * 3 2 1 7 7 C 1.37877 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00182 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99744 * 263.45993 * 10 9 7 12 12 C 1.50703 * 109.46917 * 269.99754 * 11 10 9 13 13 C 1.38225 * 119.61432 * 95.00253 * 12 11 10 14 14 C 1.38631 * 119.15940 * 179.97438 * 13 12 11 15 15 C 1.38679 * 118.41934 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16069 * 359.97438 * 15 14 13 17 17 N 1.31850 * 119.61727 * 274.72267 * 12 11 10 18 18 C 1.34774 * 120.00041 * 83.45791 * 10 9 7 19 19 O 1.21558 * 119.99729 * 183.79215 * 18 10 9 20 20 C 1.47592 * 120.00159 * 3.79523 * 18 10 9 21 21 N 1.29022 * 125.86328 * 353.75008 * 20 18 10 22 22 O 1.41382 * 112.88820 * 179.70902 * 21 20 18 23 23 C 1.44205 * 107.59448 * 17.48703 * 22 21 20 24 24 H 1.09001 * 110.97624 * 92.75941 * 23 22 21 25 25 C 1.50706 * 110.97564 * 216.50023 * 23 22 21 26 26 C 1.38227 * 119.99820 * 215.49473 * 25 23 22 27 27 C 1.38237 * 119.99981 * 180.27772 * 26 25 23 28 28 C 1.38241 * 119.99599 * 359.46565 * 27 26 25 29 29 C 1.38227 * 119.99972 * 0.55814 * 28 27 26 30 30 C 1.38237 * 119.99719 * 35.51695 * 25 23 22 31 31 C 1.51757 * 125.85000 * 173.81795 * 20 18 10 32 32 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47281 * 60.00262 * 9 7 2 34 34 H 1.09004 * 109.46901 * 299.99893 * 9 7 2 35 35 H 1.09001 * 109.47277 * 29.99816 * 11 10 9 36 36 H 1.09000 * 109.46692 * 149.99689 * 11 10 9 37 37 H 1.08002 * 120.42281 * 359.95116 * 13 12 11 38 38 H 1.07996 * 120.78998 * 180.02562 * 14 13 12 39 39 H 1.07994 * 120.41825 * 180.02562 * 15 14 13 40 40 H 1.08000 * 119.61052 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.00607 * 0.02562 * 26 25 23 42 42 H 1.08004 * 120.00329 * 179.72712 * 27 26 25 43 43 H 1.07998 * 119.99552 * 180.27940 * 28 27 26 44 44 H 1.07998 * 119.99967 * 179.72186 * 29 28 27 45 45 H 1.07998 * 120.00040 * 0.02562 * 30 25 23 46 46 H 1.08998 * 110.82400 * 46.33737 * 31 20 18 47 47 H 1.09000 * 110.78077 * 282.84781 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.5692 -4.2634 -1.2611 12 6 1.6218 -5.4038 -1.5314 13 6 0.5179 -5.1983 -2.3375 14 6 -0.3471 -6.2541 -2.5803 15 6 -0.0684 -7.4825 -2.0002 16 6 1.0545 -7.6125 -1.2054 17 7 1.8585 -6.5873 -1.0007 18 6 2.7420 -4.0385 1.1590 19 8 3.5833 -4.9159 1.1522 20 6 2.3108 -3.4396 2.4372 21 7 1.5164 -2.4315 2.5696 22 8 1.2828 -2.0895 3.9214 23 6 2.3192 -2.7056 4.7124 24 1 3.1573 -2.0237 4.8569 25 6 1.7778 -3.1788 6.0368 26 6 2.5653 -3.1075 7.1706 27 6 2.0707 -3.5468 8.3844 28 6 0.7846 -4.0471 8.4664 29 6 -0.0027 -4.1188 7.3325 30 6 0.4938 -3.6844 6.1177 31 6 2.7269 -3.9030 3.8210 32 1 -0.4849 0.8400 0.0004 33 1 0.6241 -2.5568 -0.8903 34 1 0.6247 -2.5571 0.8897 35 1 2.5086 -3.5401 -2.0743 36 1 3.5874 -4.6459 -1.1901 37 1 0.3314 -4.2275 -2.7724 38 1 -1.2173 -6.1230 -3.2064 39 1 -0.7203 -8.3269 -2.1681 40 1 1.2787 -8.5659 -0.7504 41 1 3.5685 -2.7125 7.1075 42 1 2.6876 -3.4953 9.2695 43 1 0.3966 -4.3861 9.4156 44 1 -1.0058 -4.5138 7.3957 45 1 -0.1212 -3.7407 5.2317 46 1 3.8029 -4.0705 3.8663 47 1 2.1817 -4.8022 4.1079 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069511908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = 54.680175 kcal Electronic energy + Delta-G solvation = -32392.676518 eV Core-core repulsion = 28121.683003 eV Total energy + Delta-G solvation = -4270.993515 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 5.76 seconds Orbital eigenvalues (eV) -41.86296 -41.19588 -40.31456 -39.49783 -37.00728 -34.74322 -34.32917 -33.47433 -33.35332 -32.59040 -31.82867 -29.97085 -29.37780 -28.01050 -25.46970 -24.99011 -24.46192 -24.10740 -23.50904 -22.61477 -22.04659 -20.00430 -18.73670 -18.39523 -18.15454 -17.74204 -17.49669 -17.17502 -16.81677 -16.68294 -16.56131 -16.30799 -15.94826 -15.73829 -15.41721 -14.97941 -14.69780 -14.46606 -14.29454 -14.24123 -14.21582 -14.13247 -13.93977 -13.84445 -13.58137 -13.34157 -13.09596 -12.88452 -12.79219 -12.64268 -12.59966 -12.19074 -12.10544 -11.96992 -11.73817 -11.43825 -11.22194 -10.79155 -10.67011 -10.47225 -10.37490 -9.97845 -9.86529 -9.74021 -9.60611 -8.13890 -6.23372 0.03637 0.13935 0.29484 0.40467 0.45860 1.38152 1.41821 1.50374 1.74993 2.03355 2.20286 2.44825 2.78665 2.93074 3.20542 3.23606 3.33289 3.37769 3.54534 3.67824 3.82528 3.83825 4.03028 4.11169 4.13239 4.17045 4.25994 4.28142 4.31681 4.46621 4.52577 4.58589 4.59827 4.62079 4.74822 4.76631 4.82243 4.87213 4.99113 5.12217 5.23244 5.27637 5.36014 5.51164 5.57597 5.59610 5.63663 5.76839 5.81367 6.05035 6.10170 6.17021 6.35170 6.81973 7.04779 7.11983 7.44564 8.93820 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.006879 B = 0.003677 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4069.374437 B = 7612.933288 C =10426.151079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.526 4.526 8 H 0.045 0.955 9 C 0.244 3.756 10 N -0.573 5.573 11 C 0.166 3.834 12 C 0.091 3.909 13 C -0.165 4.165 14 C -0.078 4.078 15 C -0.163 4.163 16 C 0.079 3.921 17 N -0.498 5.498 18 C 0.582 3.418 19 O -0.549 6.549 20 C 0.021 3.979 21 N -0.199 5.199 22 O -0.214 6.214 23 C 0.081 3.919 24 H 0.106 0.894 25 C -0.100 4.100 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.115 4.115 29 C -0.127 4.127 30 C -0.117 4.117 31 C -0.107 4.107 32 H 0.264 0.736 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 -12.770 8.109 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.064 0.936 9 C 0.124 3.876 10 N -0.303 5.303 11 C 0.043 3.957 12 C -0.047 4.047 13 C -0.185 4.185 14 C -0.104 4.104 15 C -0.183 4.183 16 C -0.079 4.079 17 N -0.207 5.207 18 C 0.367 3.633 19 O -0.426 6.426 20 C -0.173 4.173 21 N 0.056 4.944 22 O -0.234 6.234 23 C 0.023 3.977 24 H 0.123 0.877 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.145 4.145 30 C -0.135 4.135 31 C -0.147 4.147 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.189 0.811 40 H 0.192 0.808 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.167 -12.344 8.163 14.800 hybrid contribution -0.042 0.916 -0.399 1.000 sum 0.125 -11.428 7.764 13.816 Atomic orbital electron populations 1.70008 1.07012 1.27513 1.50532 1.25405 0.95341 1.01480 0.94429 0.85720 0.79002 0.80540 0.77655 1.19690 1.19896 1.21229 1.21376 0.92500 0.91223 1.51373 0.93638 1.19542 0.87576 0.82226 0.98235 1.48145 1.43682 1.33106 1.05360 1.20322 0.97559 0.91641 0.86204 1.21542 0.95693 0.92878 0.94551 1.22228 0.95213 1.01401 0.99678 1.21991 0.98794 0.92133 0.97500 1.22539 0.98638 0.99375 0.97739 1.23289 0.91245 0.97593 0.95765 1.67517 1.32004 1.00245 1.20979 1.17109 0.81890 0.81787 0.82473 1.90735 1.33098 1.31952 1.86833 1.26130 0.98916 0.94610 0.97607 1.79479 1.10022 1.09124 0.95802 1.91329 1.48986 1.71060 1.12021 1.22684 0.91350 0.93295 0.90412 0.87653 1.19537 0.95808 1.01554 0.93232 1.21220 1.00362 0.99504 0.91648 1.21499 0.96317 0.98073 0.97830 1.21588 0.94264 0.98324 0.99074 1.21400 1.01035 0.99835 0.92199 1.21051 0.95218 0.98502 0.98729 1.22806 1.06027 0.99963 0.85863 0.92738 0.95488 0.93460 0.87423 0.89447 0.84285 0.81729 0.81127 0.80770 0.83932 0.82726 0.82983 0.84283 0.87832 0.85842 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.05 13.29 21.45 0.28 -51.76 16 2 C 0.03 1.87 5.46 84.65 0.46 2.33 16 3 Si 0.94 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.53 -28.27 8.39 25.60 0.21 -28.06 16 8 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 9 C 0.24 12.20 4.77 85.63 0.41 12.61 16 10 N -0.57 -25.39 2.46 -834.21 -2.05 -27.44 16 11 C 0.17 6.33 5.71 85.63 0.49 6.82 16 12 C 0.09 3.20 6.36 42.55 0.27 3.47 16 13 C -0.16 -4.89 9.72 22.36 0.22 -4.67 16 14 C -0.08 -1.79 10.18 22.47 0.23 -1.56 16 15 C -0.16 -3.41 10.11 22.36 0.23 -3.18 16 16 C 0.08 2.07 11.18 84.67 0.95 3.01 16 17 N -0.50 -17.43 10.27 -183.89 -1.89 -19.32 16 18 C 0.58 25.98 7.61 86.71 0.66 26.64 16 19 O -0.55 -25.10 16.52 -3.90 -0.06 -25.16 16 20 C 0.02 0.90 7.00 45.78 0.32 1.22 16 21 N -0.20 -9.31 8.25 -42.24 -0.35 -9.66 16 22 O -0.21 -9.10 11.50 -38.30 -0.44 -9.54 16 23 C 0.08 2.60 4.00 30.44 0.12 2.72 16 24 H 0.11 3.08 8.07 -2.39 -0.02 3.06 16 25 C -0.10 -2.75 5.01 -19.87 -0.10 -2.85 16 26 C -0.11 -2.32 9.69 22.27 0.22 -2.10 16 27 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 28 C -0.11 -1.98 10.05 22.27 0.22 -1.75 16 29 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 30 C -0.12 -3.25 9.31 22.27 0.21 -3.04 16 31 C -0.11 -3.50 6.44 30.78 0.20 -3.30 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 34 H 0.05 2.60 5.38 -2.39 -0.01 2.59 16 35 H 0.11 3.79 7.97 -2.39 -0.02 3.77 16 36 H 0.09 3.41 7.37 -2.39 -0.02 3.39 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.10 3.27 7.71 -2.91 -0.02 3.25 16 46 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 47 H 0.11 3.31 7.85 -2.39 -0.02 3.29 16 Total: -1.00 -72.70 405.34 4.27 -68.44 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.99 Total: 24.52 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.76 Total: 3.98 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.00 Total: -108.18 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.50 Total: -34.70 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.70 4.27 -68.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069511908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.115 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.76 seconds