Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48504 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47380 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47023 * 60.00337 * 3 2 1 7 7 C 1.37877 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00198 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99888 * 263.39994 * 10 9 7 12 12 C 1.50693 * 109.47663 * 270.00082 * 11 10 9 13 13 C 1.38675 * 120.42067 * 269.72547 * 12 11 10 14 14 C 1.38625 * 118.42279 * 179.78247 * 13 12 11 15 15 C 1.38232 * 119.16111 * 0.50555 * 14 13 12 16 16 N 1.31854 * 120.75959 * 359.73127 * 15 14 13 17 17 C 1.31881 * 121.72958 * 359.97438 * 16 15 14 18 18 C 1.34775 * 120.00192 * 83.40430 * 10 9 7 19 19 O 1.21558 * 120.00137 * 183.82311 * 18 10 9 20 20 C 1.47597 * 120.00031 * 3.82426 * 18 10 9 21 21 N 1.29018 * 125.86214 * 353.72787 * 20 18 10 22 22 O 1.41380 * 112.88622 * 180.28190 * 21 20 18 23 23 C 1.44202 * 107.59578 * 342.51400 * 22 21 20 24 24 H 1.09009 * 110.97410 * 267.23879 * 23 22 21 25 25 C 1.50706 * 110.97896 * 143.50213 * 23 22 21 26 26 C 1.38237 * 119.99621 * 326.18173 * 25 23 22 27 27 C 1.38231 * 119.99344 * 179.79152 * 26 25 23 28 28 C 1.38233 * 120.00528 * 0.43397 * 27 26 25 29 29 C 1.38240 * 119.99871 * 359.81641 * 28 27 26 30 30 C 1.38232 * 119.99809 * 146.45114 * 25 23 22 31 31 C 1.51687 * 125.86013 * 173.41873 * 20 18 10 32 32 H 0.97001 * 119.99679 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47595 * 60.00037 * 9 7 2 34 34 H 1.09000 * 109.46969 * 299.99761 * 9 7 2 35 35 H 1.09000 * 109.47093 * 30.00629 * 11 10 9 36 36 H 1.09001 * 109.47144 * 149.99448 * 11 10 9 37 37 H 1.07997 * 120.78588 * 0.02562 * 13 12 11 38 38 H 1.07997 * 120.42417 * 180.21402 * 14 13 12 39 39 H 1.07996 * 119.62004 * 179.74712 * 15 14 13 40 40 H 1.08005 * 119.61809 * 180.02562 * 17 16 15 41 41 H 1.07998 * 119.99796 * 359.97438 * 26 25 23 42 42 H 1.08009 * 119.99535 * 180.27323 * 27 26 25 43 43 H 1.08002 * 119.99919 * 179.83917 * 28 27 26 44 44 H 1.07993 * 119.99725 * 180.02562 * 29 28 27 45 45 H 1.07999 * 120.00538 * 359.97438 * 30 25 23 46 46 H 1.08996 * 110.79670 * 313.68846 * 31 20 18 47 47 H 1.09004 * 110.79586 * 77.16517 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.5692 -4.2636 -1.2618 12 6 1.6219 -5.4040 -1.5320 13 6 1.9081 -6.6793 -1.0686 14 6 1.0055 -7.6967 -1.3369 15 6 -0.1364 -7.4105 -2.0614 16 7 -0.3736 -6.1865 -2.4906 17 6 0.4596 -5.1932 -2.2491 18 6 2.7420 -4.0383 1.1582 19 8 3.5837 -4.9153 1.1516 20 6 2.3102 -3.4396 2.4363 21 7 1.5157 -2.4316 2.5686 22 8 1.2917 -2.0817 3.9200 23 6 1.6879 -3.2052 4.7326 24 1 0.8397 -3.8596 4.9338 25 6 2.3259 -2.7434 6.0175 26 6 3.0845 -1.5879 6.0361 27 6 3.6662 -1.1621 7.2156 28 6 3.4967 -1.8964 8.3744 29 6 2.7423 -3.0547 8.3546 30 6 2.1571 -3.4783 7.1760 31 6 2.7191 -3.9078 3.8200 32 1 -0.4850 0.8401 0.0004 33 1 0.6248 -2.5564 -0.8919 34 1 0.6241 -2.5575 0.8880 35 1 2.5087 -3.5405 -2.0752 36 1 3.5874 -4.6460 -1.1908 37 1 2.8106 -6.8744 -0.5086 38 1 1.1944 -8.7013 -0.9884 39 1 -0.8425 -8.1984 -2.2782 40 1 0.2313 -4.2036 -2.6166 41 1 3.2203 -1.0164 5.1298 42 1 4.2552 -0.2569 7.2311 43 1 3.9533 -1.5649 9.2953 44 1 2.6096 -3.6281 9.2601 45 1 1.5677 -4.3831 7.1606 46 1 2.6353 -4.9914 3.9023 47 1 3.7306 -3.5777 4.0570 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069617744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = 68.905406 kcal Electronic energy + Delta-G solvation = -32378.905713 eV Core-core repulsion = 28108.529050 eV Total energy + Delta-G solvation = -4270.376663 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.51753 -40.04541 -39.11465 -38.32236 -35.47179 -33.40532 -32.68574 -32.29299 -32.08129 -31.26718 -30.96135 -28.82766 -27.56193 -26.41179 -24.06052 -23.58370 -23.34344 -22.68011 -22.58435 -21.31665 -21.01121 -18.49011 -17.21575 -17.01657 -16.98648 -16.42329 -16.14317 -16.07280 -15.74661 -15.28652 -15.20710 -14.82573 -14.62725 -14.41671 -14.11194 -13.67636 -13.51916 -13.43744 -13.25448 -13.06144 -12.92443 -12.82952 -12.62119 -12.36624 -12.24454 -11.90809 -11.79080 -11.66579 -11.25384 -11.16768 -11.09031 -10.95677 -10.84158 -10.29463 -9.92085 -9.85812 -9.71131 -9.55250 -9.29854 -9.24167 -8.99924 -8.87936 -8.79080 -8.43971 -7.98118 -6.09769 -4.14187 1.17829 1.21873 1.32600 1.44598 1.58955 3.16480 3.27298 3.35899 3.37817 3.53687 3.57731 3.72668 4.04181 4.38229 4.49905 4.59798 4.62593 4.75364 4.83788 4.90353 4.94396 4.98759 5.05964 5.06960 5.10467 5.17157 5.23256 5.27360 5.42210 5.49520 5.51020 5.65636 5.78317 5.79495 5.84472 5.91300 5.97978 6.02187 6.06125 6.26894 6.34280 6.43663 6.46244 6.53085 6.54850 6.85949 6.89234 7.26156 7.37112 7.62778 7.79668 8.01530 8.09195 8.12569 8.55969 8.87957 9.50776 10.98431 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007842 B = 0.003454 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3569.792502 B = 8105.463947 C =10762.968388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.226 3.774 10 N -0.569 5.569 11 C 0.159 3.841 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.181 4.181 15 C 0.092 3.908 16 N -0.488 5.488 17 C 0.118 3.882 18 C 0.589 3.411 19 O -0.557 6.557 20 C 0.023 3.977 21 N -0.156 5.156 22 O -0.194 6.194 23 C 0.080 3.920 24 H 0.094 0.906 25 C -0.082 4.082 26 C -0.092 4.092 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.124 4.124 30 C -0.107 4.107 31 C -0.116 4.116 32 H 0.263 0.737 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -11.042 8.759 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.107 3.893 10 N -0.298 5.298 11 C 0.036 3.964 12 C -0.153 4.153 13 C -0.083 4.083 14 C -0.201 4.201 15 C -0.065 4.065 16 N -0.197 5.197 17 C -0.039 4.039 18 C 0.375 3.625 19 O -0.436 6.436 20 C -0.171 4.171 21 N 0.098 4.902 22 O -0.213 6.213 23 C 0.021 3.979 24 H 0.112 0.888 25 C -0.083 4.083 26 C -0.110 4.110 27 C -0.139 4.139 28 C -0.137 4.137 29 C -0.142 4.142 30 C -0.125 4.125 31 C -0.156 4.156 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.121 0.879 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.123 -10.258 7.818 13.270 hybrid contribution 1.538 0.316 1.103 1.919 sum 4.662 -9.942 8.922 14.148 Atomic orbital electron populations 1.69916 1.05894 1.26970 1.49138 1.24782 0.94691 0.98798 0.94515 0.86559 0.80064 0.83837 0.77676 1.19892 1.20965 1.20821 1.21235 0.93023 0.90041 1.52212 0.92503 1.19996 0.87586 0.82028 0.99715 1.48301 1.43837 1.33407 1.04233 1.20253 0.96854 0.92190 0.87115 1.21382 0.98306 0.96038 0.99536 1.21662 0.99145 0.92065 0.95441 1.22109 0.96282 1.00332 1.01396 1.22728 0.95525 0.94096 0.94174 1.67718 1.31165 1.00398 1.20382 1.22834 0.89132 0.98127 0.93841 1.16906 0.81702 0.81798 0.82128 1.90704 1.33365 1.32666 1.86871 1.25817 0.97508 0.97446 0.96358 1.79552 1.07488 1.08692 0.94420 1.91418 1.83205 1.35237 1.11440 1.22439 0.96017 0.89323 0.90145 0.88817 1.19575 0.98668 0.96482 0.93611 1.21132 0.95469 0.95602 0.98812 1.21183 0.99999 0.99978 0.92693 1.21184 0.98921 0.95413 0.98201 1.21069 0.98313 0.97051 0.97725 1.20930 0.99922 0.99677 0.91956 1.22728 1.01409 1.03358 0.88094 0.92691 0.94379 0.91697 0.88443 0.89228 0.84414 0.85158 0.83205 0.82382 0.85251 0.85859 0.86127 0.85950 0.85841 0.87864 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 13.29 55.43 0.74 -23.77 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -13.51 8.39 -34.44 -0.29 -13.80 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.23 5.26 4.77 -5.20 -0.02 5.23 16 10 N -0.57 -11.34 2.46 -177.66 -0.44 -11.78 16 11 C 0.16 2.65 5.56 -5.20 -0.03 2.62 16 12 C -0.15 -2.32 5.48 -104.48 -0.57 -2.90 16 13 C -0.06 -0.80 9.86 -39.28 -0.39 -1.19 16 14 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 15 C 0.09 1.20 11.18 -17.54 -0.20 1.00 16 16 N -0.49 -7.68 10.36 -13.25 -0.14 -7.82 16 17 C 0.12 1.87 10.86 -17.55 -0.19 1.68 16 18 C 0.59 11.73 7.61 -12.44 -0.09 11.64 16 19 O -0.56 -11.11 16.36 5.31 0.09 -11.02 16 20 C 0.02 0.44 7.00 -79.47 -0.56 -0.12 16 21 N -0.16 -3.37 8.25 35.28 0.29 -3.08 16 22 O -0.19 -3.84 11.44 -11.36 -0.13 -3.97 16 23 C 0.08 1.19 3.99 -27.04 -0.11 1.09 16 24 H 0.09 1.24 8.08 -51.92 -0.42 0.82 16 25 C -0.08 -1.11 5.01 -104.62 -0.52 -1.64 16 26 C -0.09 -1.28 9.38 -39.58 -0.37 -1.65 16 27 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 28 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 29 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 30 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 31 C -0.12 -1.75 6.45 -26.56 -0.17 -1.93 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.07 1.65 5.39 -51.93 -0.28 1.37 16 35 H 0.10 1.55 8.02 -51.93 -0.42 1.13 16 36 H 0.09 1.43 7.32 -51.93 -0.38 1.05 16 37 H 0.14 1.91 7.90 -52.49 -0.41 1.49 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.16 2.45 8.06 -52.48 -0.42 2.03 16 41 H 0.13 1.98 7.66 -52.49 -0.40 1.57 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.10 1.48 7.89 -51.93 -0.41 1.08 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -30.99 404.90 -10.16 -41.16 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.07 Total: 5.45 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -5.59 Total: -7.25 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.45 Total: -46.45 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.04 Total: -14.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.99 -10.16 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069617744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.063 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds