Wall clock time and date at job start Tue Mar 31 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48504 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47380 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47023 * 60.00337 * 3 2 1 7 7 C 1.37877 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00198 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99888 * 263.39994 * 10 9 7 12 12 C 1.50693 * 109.47663 * 270.00082 * 11 10 9 13 13 C 1.38675 * 120.42067 * 269.72547 * 12 11 10 14 14 C 1.38625 * 118.42279 * 179.78247 * 13 12 11 15 15 C 1.38232 * 119.16111 * 0.50555 * 14 13 12 16 16 N 1.31854 * 120.75959 * 359.73127 * 15 14 13 17 17 C 1.31881 * 121.72958 * 359.97438 * 16 15 14 18 18 C 1.34775 * 120.00192 * 83.40430 * 10 9 7 19 19 O 1.21558 * 120.00137 * 183.82311 * 18 10 9 20 20 C 1.47597 * 120.00031 * 3.82426 * 18 10 9 21 21 N 1.29018 * 125.86214 * 353.72787 * 20 18 10 22 22 O 1.41380 * 112.88622 * 180.28190 * 21 20 18 23 23 C 1.44202 * 107.59578 * 342.51400 * 22 21 20 24 24 H 1.09009 * 110.97410 * 267.23879 * 23 22 21 25 25 C 1.50706 * 110.97896 * 143.50213 * 23 22 21 26 26 C 1.38237 * 119.99621 * 326.18173 * 25 23 22 27 27 C 1.38231 * 119.99344 * 179.79152 * 26 25 23 28 28 C 1.38233 * 120.00528 * 0.43397 * 27 26 25 29 29 C 1.38240 * 119.99871 * 359.81641 * 28 27 26 30 30 C 1.38232 * 119.99809 * 146.45114 * 25 23 22 31 31 C 1.51687 * 125.86013 * 173.41873 * 20 18 10 32 32 H 0.97001 * 119.99679 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47595 * 60.00037 * 9 7 2 34 34 H 1.09000 * 109.46969 * 299.99761 * 9 7 2 35 35 H 1.09000 * 109.47093 * 30.00629 * 11 10 9 36 36 H 1.09001 * 109.47144 * 149.99448 * 11 10 9 37 37 H 1.07997 * 120.78588 * 0.02562 * 13 12 11 38 38 H 1.07997 * 120.42417 * 180.21402 * 14 13 12 39 39 H 1.07996 * 119.62004 * 179.74712 * 15 14 13 40 40 H 1.08005 * 119.61809 * 180.02562 * 17 16 15 41 41 H 1.07998 * 119.99796 * 359.97438 * 26 25 23 42 42 H 1.08009 * 119.99535 * 180.27323 * 27 26 25 43 43 H 1.08002 * 119.99919 * 179.83917 * 28 27 26 44 44 H 1.07993 * 119.99725 * 180.02562 * 29 28 27 45 45 H 1.07999 * 120.00538 * 359.97438 * 30 25 23 46 46 H 1.08996 * 110.79670 * 313.68846 * 31 20 18 47 47 H 1.09004 * 110.79586 * 77.16517 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.5692 -4.2636 -1.2618 12 6 1.6219 -5.4040 -1.5320 13 6 1.9081 -6.6793 -1.0686 14 6 1.0055 -7.6967 -1.3369 15 6 -0.1364 -7.4105 -2.0614 16 7 -0.3736 -6.1865 -2.4906 17 6 0.4596 -5.1932 -2.2491 18 6 2.7420 -4.0383 1.1582 19 8 3.5837 -4.9153 1.1516 20 6 2.3102 -3.4396 2.4363 21 7 1.5157 -2.4316 2.5686 22 8 1.2917 -2.0817 3.9200 23 6 1.6879 -3.2052 4.7326 24 1 0.8397 -3.8596 4.9338 25 6 2.3259 -2.7434 6.0175 26 6 3.0845 -1.5879 6.0361 27 6 3.6662 -1.1621 7.2156 28 6 3.4967 -1.8964 8.3744 29 6 2.7423 -3.0547 8.3546 30 6 2.1571 -3.4783 7.1760 31 6 2.7191 -3.9078 3.8200 32 1 -0.4850 0.8401 0.0004 33 1 0.6248 -2.5564 -0.8919 34 1 0.6241 -2.5575 0.8880 35 1 2.5087 -3.5405 -2.0752 36 1 3.5874 -4.6460 -1.1908 37 1 2.8106 -6.8744 -0.5086 38 1 1.1944 -8.7013 -0.9884 39 1 -0.8425 -8.1984 -2.2782 40 1 0.2313 -4.2036 -2.6166 41 1 3.2203 -1.0164 5.1298 42 1 4.2552 -0.2569 7.2311 43 1 3.9533 -1.5649 9.2953 44 1 2.6096 -3.6281 9.2601 45 1 1.5677 -4.3831 7.1606 46 1 2.6353 -4.9914 3.9023 47 1 3.7306 -3.5777 4.0570 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069617744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:50 Heat of formation + Delta-G solvation = 52.940556 kcal Electronic energy + Delta-G solvation = -32379.598001 eV Core-core repulsion = 28108.529050 eV Total energy + Delta-G solvation = -4271.068951 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -41.88659 -41.21400 -40.35947 -39.51619 -37.08011 -34.92226 -34.35288 -33.48308 -33.37479 -32.48941 -31.82523 -29.96529 -29.34762 -27.85682 -25.49484 -25.00131 -24.51821 -24.13261 -23.51198 -22.61280 -22.04330 -19.99915 -18.76399 -18.30530 -18.23551 -17.88531 -17.62534 -17.21897 -16.88870 -16.70001 -16.57186 -16.33029 -15.81417 -15.71517 -15.30793 -15.02822 -14.69579 -14.47254 -14.36845 -14.28598 -14.22115 -14.19507 -13.92241 -13.78709 -13.59832 -13.39280 -13.23575 -12.87446 -12.81508 -12.75801 -12.49943 -12.20935 -12.08491 -11.97649 -11.74334 -11.45785 -11.29353 -10.76055 -10.69108 -10.46231 -10.45006 -10.00083 -9.86815 -9.73586 -9.64000 -8.15041 -6.24307 0.03549 0.10910 0.29556 0.33689 0.45578 1.36654 1.40212 1.48358 1.75418 1.98826 2.19897 2.43308 2.78728 2.89969 3.19822 3.21087 3.34327 3.53464 3.55747 3.68503 3.84518 3.85756 3.88456 4.08943 4.09390 4.11541 4.13455 4.28036 4.30896 4.45859 4.53538 4.58693 4.62927 4.65498 4.71853 4.75689 4.80919 4.87004 4.99424 5.12111 5.19231 5.32861 5.36627 5.50887 5.57694 5.58222 5.61784 5.75341 5.77704 6.04961 6.08670 6.17584 6.31768 6.81156 6.99616 7.01532 7.43598 8.92674 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007842 B = 0.003454 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3569.792502 B = 8105.463947 C =10762.968388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.034 3.966 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.524 4.524 8 H 0.046 0.954 9 C 0.244 3.756 10 N -0.571 5.571 11 C 0.159 3.841 12 C -0.160 4.160 13 C -0.063 4.063 14 C -0.168 4.168 15 C 0.090 3.910 16 N -0.512 5.512 17 C 0.101 3.899 18 C 0.585 3.415 19 O -0.556 6.556 20 C 0.021 3.979 21 N -0.201 5.201 22 O -0.216 6.216 23 C 0.080 3.920 24 H 0.111 0.889 25 C -0.100 4.100 26 C -0.120 4.120 27 C -0.129 4.129 28 C -0.115 4.115 29 C -0.119 4.119 30 C -0.107 4.107 31 C -0.107 4.107 32 H 0.263 0.737 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.169 0.831 39 H 0.186 0.814 40 H 0.148 0.852 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.130 0.870 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -13.394 10.898 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.563 4.563 8 H 0.064 0.936 9 C 0.124 3.876 10 N -0.300 5.300 11 C 0.037 3.963 12 C -0.163 4.163 13 C -0.089 4.089 14 C -0.187 4.187 15 C -0.067 4.067 16 N -0.221 5.221 17 C -0.055 4.055 18 C 0.371 3.629 19 O -0.435 6.435 20 C -0.173 4.173 21 N 0.054 4.946 22 O -0.236 6.236 23 C 0.022 3.978 24 H 0.129 0.871 25 C -0.101 4.101 26 C -0.138 4.138 27 C -0.147 4.147 28 C -0.133 4.133 29 C -0.137 4.137 30 C -0.125 4.125 31 C -0.146 4.146 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.166 0.834 41 H 0.118 0.882 42 H 0.153 0.847 43 H 0.169 0.831 44 H 0.174 0.826 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.942 -12.620 9.940 16.541 hybrid contribution 1.315 0.919 0.525 1.688 sum 5.257 -11.701 10.465 16.555 Atomic orbital electron populations 1.70008 1.07023 1.27492 1.50597 1.25399 0.95303 1.01492 0.94516 0.85748 0.79030 0.80714 0.77603 1.19655 1.19990 1.21289 1.21364 0.92476 0.91237 1.51215 0.93598 1.19521 0.87598 0.82324 0.98189 1.48250 1.43312 1.32892 1.05581 1.20363 0.97604 0.92642 0.85731 1.21214 0.98122 0.96337 1.00617 1.21813 0.99825 0.91905 0.95388 1.22488 0.94960 1.01482 0.99788 1.23372 0.96373 0.93775 0.93171 1.67717 1.31518 1.01477 1.21391 1.22738 0.89739 0.98215 0.94813 1.17058 0.81655 0.81873 0.82329 1.90687 1.33229 1.32626 1.86966 1.26136 0.96626 0.96810 0.97774 1.79495 1.09086 1.10090 0.95958 1.91358 1.83653 1.37371 1.11220 1.22697 0.96646 0.88214 0.90278 0.87088 1.19557 0.99572 0.97192 0.93790 1.21062 0.97495 0.96410 0.98835 1.21386 0.99999 1.00782 0.92550 1.21577 0.98193 0.95002 0.98538 1.21509 0.96879 0.96878 0.98399 1.21224 0.99848 1.00073 0.91315 1.22783 1.01484 1.04810 0.85555 0.92771 0.95676 0.93415 0.88488 0.88446 0.84016 0.81337 0.79757 0.83436 0.88203 0.84702 0.83112 0.82590 0.83484 0.85234 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.49 13.29 21.45 0.28 -52.21 16 2 C 0.03 1.84 5.46 84.65 0.46 2.31 16 3 Si 0.94 44.20 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.52 -27.91 8.39 25.60 0.21 -27.70 16 8 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 9 C 0.24 11.90 4.77 85.63 0.41 12.31 16 10 N -0.57 -23.47 2.46 -834.26 -2.05 -25.52 16 11 C 0.16 5.42 5.56 85.63 0.48 5.90 16 12 C -0.16 -5.00 5.48 -19.77 -0.11 -5.11 16 13 C -0.06 -1.69 9.86 22.47 0.22 -1.47 16 14 C -0.17 -3.64 10.11 22.36 0.23 -3.41 16 15 C 0.09 2.14 11.18 84.69 0.95 3.09 16 16 N -0.51 -15.90 10.36 -195.84 -2.03 -17.93 16 17 C 0.10 3.32 10.86 84.67 0.92 4.23 16 18 C 0.58 23.58 7.61 86.71 0.66 24.24 16 19 O -0.56 -21.85 16.36 -3.90 -0.06 -21.91 16 20 C 0.02 0.81 7.00 45.76 0.32 1.13 16 21 N -0.20 -9.07 8.25 -42.29 -0.35 -9.42 16 22 O -0.22 -8.93 11.44 -38.29 -0.44 -9.37 16 23 C 0.08 2.39 3.99 30.39 0.12 2.51 16 24 H 0.11 2.85 8.08 -2.38 -0.02 2.83 16 25 C -0.10 -2.65 5.01 -19.86 -0.10 -2.74 16 26 C -0.12 -3.40 9.38 22.27 0.21 -3.20 16 27 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 28 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 29 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 30 C -0.11 -2.09 9.70 22.27 0.22 -1.88 16 31 C -0.11 -3.19 6.45 30.70 0.20 -2.99 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.03 1.28 8.02 -2.39 -0.02 1.26 16 34 H 0.05 2.56 5.39 -2.39 -0.01 2.55 16 35 H 0.10 3.24 8.02 -2.39 -0.02 3.22 16 36 H 0.10 3.13 7.32 -2.39 -0.02 3.11 16 37 H 0.14 3.68 7.90 -2.91 -0.02 3.66 16 38 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.10 3.33 7.66 -2.91 -0.02 3.31 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.10 3.06 7.89 -2.39 -0.02 3.04 16 Total: -1.00 -69.65 404.90 4.44 -65.21 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.99 Total: 23.85 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.06 Total: 1.08 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -4.14 Total: -105.07 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.50 Total: -31.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.65 4.44 -65.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069617744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.153 kcal (2) G-P(sol) polarization free energy of solvation -69.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds