Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00438 * 2 1 4 4 H 1.48494 * 109.47095 * 269.99958 * 3 2 1 5 5 H 1.48504 * 109.47064 * 29.99785 * 3 2 1 6 6 H 1.48495 * 109.47452 * 149.99708 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99418 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00425 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99973 * 263.45319 * 10 9 7 12 12 C 1.50695 * 109.47196 * 270.00381 * 11 10 9 13 13 C 1.38671 * 120.41816 * 90.00169 * 12 11 10 14 14 C 1.38635 * 118.41841 * 179.97438 * 13 12 11 15 15 C 1.38227 * 119.16101 * 0.02562 * 14 13 12 16 16 N 1.31855 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31891 * 121.72204 * 359.71421 * 16 15 14 18 18 C 1.34782 * 120.00078 * 83.46133 * 10 9 7 19 19 O 1.21552 * 119.99651 * 183.80165 * 18 10 9 20 20 C 1.47590 * 120.00077 * 3.79635 * 18 10 9 21 21 N 1.29015 * 125.86286 * 353.75083 * 20 18 10 22 22 O 1.41383 * 112.89189 * 179.71335 * 21 20 18 23 23 C 1.44216 * 107.58767 * 17.49512 * 22 21 20 24 24 H 1.08999 * 110.97531 * 92.76155 * 23 22 21 25 25 C 1.50701 * 110.97072 * 216.49346 * 23 22 21 26 26 C 1.38233 * 120.00173 * 218.53979 * 25 23 22 27 27 C 1.38236 * 120.00131 * 180.27852 * 26 25 23 28 28 C 1.38237 * 119.99678 * 359.47587 * 27 26 25 29 29 C 1.38226 * 120.00041 * 0.54827 * 28 27 26 30 30 C 1.38235 * 119.99778 * 38.57307 * 25 23 22 31 31 C 1.51684 * 125.86394 * 173.79399 * 20 18 10 32 32 H 0.97003 * 119.99645 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47587 * 59.99529 * 9 7 2 34 34 H 1.09006 * 109.46776 * 299.99767 * 9 7 2 35 35 H 1.08997 * 109.46432 * 30.00761 * 11 10 9 36 36 H 1.09001 * 109.46799 * 150.00040 * 11 10 9 37 37 H 1.08000 * 120.78940 * 0.02562 * 13 12 11 38 38 H 1.07995 * 120.41560 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.61620 * 179.97438 * 15 14 13 40 40 H 1.08005 * 119.61545 * 180.30488 * 17 16 15 41 41 H 1.08004 * 119.99685 * 0.02562 * 26 25 23 42 42 H 1.07998 * 119.99708 * 179.72756 * 27 26 25 43 43 H 1.07998 * 119.99413 * 180.27599 * 28 27 26 44 44 H 1.08001 * 119.99842 * 179.72257 * 29 28 27 45 45 H 1.07998 * 120.00279 * 359.97438 * 30 25 23 46 46 H 1.08999 * 110.79557 * 46.31440 * 31 20 18 47 47 H 1.08995 * 110.79664 * 282.84372 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 4.3798 -3.2170 1.2633 12 6 5.8409 -2.9666 1.5340 13 6 6.2405 -1.8504 2.2533 14 6 7.5952 -1.6609 2.4786 15 6 8.4962 -2.5840 1.9818 16 7 8.0800 -3.6341 1.3017 17 6 6.7990 -3.8495 1.0736 18 6 4.0995 -3.2559 -1.1569 19 8 4.4384 -4.4231 -1.1491 20 6 3.7970 -2.5837 -2.4356 21 7 3.3214 -1.3919 -2.5690 22 8 3.1425 -1.0193 -3.9211 23 6 3.1579 -2.2256 -4.7112 24 1 2.1483 -2.6103 -4.8558 25 6 3.8387 -1.9943 -6.0356 26 6 3.3451 -2.5918 -7.1802 27 6 3.9730 -2.3842 -8.3941 28 6 5.0881 -1.5703 -8.4652 29 6 5.5819 -0.9732 -7.3206 30 6 4.9572 -1.1850 -6.1057 31 6 3.9911 -3.1759 -3.8185 32 1 -0.4850 0.8401 0.0004 33 1 3.8746 -0.6801 0.8911 34 1 3.8752 -0.6806 -0.8889 35 1 3.7833 -2.8023 2.0759 36 1 4.2019 -4.2901 1.1930 37 1 5.5135 -1.1460 2.6298 38 1 7.9422 -0.8025 3.0346 39 1 9.5533 -2.4433 2.1527 40 1 6.4956 -4.7236 0.5166 41 1 2.4712 -3.2242 -7.1254 42 1 3.5899 -2.8547 -9.2876 43 1 5.5759 -1.4046 -9.4143 44 1 6.4558 -0.3409 -7.3754 45 1 5.3429 -0.7182 -5.2115 46 1 3.5987 -4.1918 -3.8630 47 1 5.0425 -3.1532 -4.1051 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069617748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = 72.684183 kcal Electronic energy + Delta-G solvation = -32478.285462 eV Core-core repulsion = 28208.072659 eV Total energy + Delta-G solvation = -4270.212803 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.59706 -40.12581 -39.19360 -38.39226 -35.62136 -33.44984 -32.68638 -32.34119 -32.16905 -31.41039 -31.01928 -28.88305 -28.16462 -26.58217 -24.10253 -23.60466 -23.38147 -22.69342 -22.39211 -21.39790 -21.05534 -18.53785 -17.29833 -17.17003 -17.02140 -16.84106 -16.26457 -16.13950 -15.76528 -15.43661 -15.23831 -14.88736 -14.66465 -14.31863 -14.22032 -13.70786 -13.60645 -13.48563 -13.27882 -13.18709 -12.97535 -12.96136 -12.76354 -12.48018 -12.29542 -12.26774 -11.82119 -11.68054 -11.55753 -11.23010 -11.13772 -10.98989 -10.76053 -10.35500 -10.13370 -9.87762 -9.66510 -9.60941 -9.39004 -9.31645 -9.04368 -8.95517 -8.84528 -8.63031 -8.06203 -6.16764 -4.16815 1.11453 1.15191 1.27861 1.35408 1.49362 3.06416 3.25258 3.29282 3.36053 3.45833 3.49368 3.67292 3.95826 4.34411 4.42547 4.51539 4.56297 4.73032 4.77049 4.81790 4.89164 4.90947 4.98096 5.01182 5.08109 5.11007 5.13325 5.17494 5.37160 5.43262 5.46127 5.62744 5.71542 5.74603 5.79752 5.84603 5.91601 5.96076 5.99041 6.16138 6.27165 6.30757 6.37544 6.39714 6.48525 6.76878 6.78293 6.84231 7.06328 7.44343 7.50628 7.79990 8.03532 8.32867 8.48938 8.84517 9.43276 10.95943 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007525 B = 0.003595 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.059936 B = 7787.137480 C = 9953.058971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.087 3.913 3 Si 0.869 3.131 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.197 3.803 10 N -0.565 5.565 11 C 0.159 3.841 12 C -0.150 4.150 13 C -0.059 4.059 14 C -0.178 4.178 15 C 0.092 3.908 16 N -0.490 5.490 17 C 0.118 3.882 18 C 0.592 3.408 19 O -0.548 6.548 20 C 0.031 3.969 21 N -0.174 5.174 22 O -0.193 6.193 23 C 0.082 3.918 24 H 0.099 0.901 25 C -0.082 4.082 26 C -0.104 4.104 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.121 4.121 30 C -0.094 4.094 31 C -0.117 4.117 32 H 0.266 0.734 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.108 0.892 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 -3.847 -7.338 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.116 4.116 3 Si 0.695 3.305 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.076 3.924 10 N -0.294 5.294 11 C 0.036 3.964 12 C -0.154 4.154 13 C -0.086 4.086 14 C -0.198 4.198 15 C -0.065 4.065 16 N -0.198 5.198 17 C -0.039 4.039 18 C 0.378 3.622 19 O -0.425 6.425 20 C -0.163 4.163 21 N 0.081 4.919 22 O -0.213 6.213 23 C 0.023 3.977 24 H 0.116 0.884 25 C -0.083 4.083 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.139 4.139 30 C -0.112 4.112 31 C -0.157 4.157 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.126 0.874 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.636 -3.831 -7.208 15.043 hybrid contribution -0.255 1.094 -0.183 1.138 sum 12.381 -2.737 -7.391 14.677 Atomic orbital electron populations 1.69876 1.06246 1.27123 1.49596 1.24703 0.94533 0.98650 0.93760 0.86969 0.80091 0.84120 0.79285 1.19250 1.21231 1.19263 1.21105 0.88245 0.94889 1.52340 0.90700 1.20337 0.96620 0.76867 0.98572 1.47931 1.60581 1.16320 1.04602 1.20278 0.89340 0.99963 0.86802 1.21393 0.98182 0.96403 0.99384 1.21643 0.96231 0.95854 0.94872 1.22120 0.94054 1.01136 1.02491 1.22740 1.00067 0.90094 0.93597 1.67731 1.17932 1.20668 1.13512 1.22874 0.87512 0.98495 0.95070 1.16870 0.78014 0.85334 0.81987 1.90726 1.49788 1.15299 1.86718 1.25768 0.99092 0.95014 0.96426 1.79278 1.04354 1.13264 0.94979 1.91369 1.91231 1.26680 1.12001 1.22487 0.99021 0.86412 0.89795 0.88368 1.19581 0.96186 0.99040 0.93488 1.20983 0.99837 0.99567 0.91829 1.21095 0.96306 0.99121 0.97490 1.21183 0.96681 0.97416 0.98371 1.21155 1.00133 1.00080 0.92554 1.21052 0.94771 0.97059 0.98338 1.22771 1.02784 1.02103 0.88054 0.92444 0.94833 0.92584 0.88388 0.88724 0.84539 0.84958 0.83133 0.82262 0.85649 0.85851 0.86085 0.85912 0.85674 0.87366 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 2 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.53 -13.75 8.94 -34.44 -0.31 -14.06 16 8 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 9 C 0.20 4.31 3.83 -5.20 -0.02 4.29 16 10 N -0.57 -10.99 2.46 -177.65 -0.44 -11.43 16 11 C 0.16 2.58 5.56 -5.19 -0.03 2.55 16 12 C -0.15 -2.25 5.48 -104.49 -0.57 -2.82 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.19 16 14 C -0.18 -2.10 10.11 -39.44 -0.40 -2.50 16 15 C 0.09 1.14 11.18 -17.55 -0.20 0.95 16 16 N -0.49 -7.31 10.36 -13.25 -0.14 -7.45 16 17 C 0.12 1.79 10.86 -17.55 -0.19 1.60 16 18 C 0.59 11.63 7.61 -12.44 -0.09 11.54 16 19 O -0.55 -10.82 16.28 5.32 0.09 -10.74 16 20 C 0.03 0.59 7.00 -79.48 -0.56 0.03 16 21 N -0.17 -3.66 8.25 35.28 0.29 -3.37 16 22 O -0.19 -3.76 11.60 -11.37 -0.13 -3.90 16 23 C 0.08 1.24 4.00 -26.97 -0.11 1.13 16 24 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 25 C -0.08 -1.08 5.04 -104.62 -0.53 -1.61 16 26 C -0.10 -1.16 9.69 -39.58 -0.38 -1.54 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 29 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 30 C -0.09 -1.22 9.19 -39.58 -0.36 -1.58 16 31 C -0.12 -1.76 6.42 -26.49 -0.17 -1.93 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.03 0.71 7.08 -51.93 -0.37 0.35 16 34 H 0.06 1.29 4.81 -51.93 -0.25 1.04 16 35 H 0.10 1.51 8.03 -51.93 -0.42 1.09 16 36 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.16 2.41 7.82 -52.48 -0.41 2.00 16 41 H 0.13 1.16 8.05 -52.48 -0.42 0.74 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.13 1.69 7.79 -52.49 -0.41 1.28 16 46 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.10 1.38 7.76 -51.93 -0.40 0.98 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -32.13 401.09 -9.80 -41.93 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.03 Total: 5.98 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -5.60 Total: -7.70 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.49 Total: -47.58 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.05 Total: -14.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.13 -9.80 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069617748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.614 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds