Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00438 * 2 1 4 4 H 1.48494 * 109.47095 * 269.99958 * 3 2 1 5 5 H 1.48504 * 109.47064 * 29.99785 * 3 2 1 6 6 H 1.48495 * 109.47452 * 149.99708 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99418 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00425 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99973 * 263.45319 * 10 9 7 12 12 C 1.50695 * 109.47196 * 270.00381 * 11 10 9 13 13 C 1.38671 * 120.41816 * 90.00169 * 12 11 10 14 14 C 1.38635 * 118.41841 * 179.97438 * 13 12 11 15 15 C 1.38227 * 119.16101 * 0.02562 * 14 13 12 16 16 N 1.31855 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31891 * 121.72204 * 359.71421 * 16 15 14 18 18 C 1.34782 * 120.00078 * 83.46133 * 10 9 7 19 19 O 1.21552 * 119.99651 * 183.80165 * 18 10 9 20 20 C 1.47590 * 120.00077 * 3.79635 * 18 10 9 21 21 N 1.29015 * 125.86286 * 353.75083 * 20 18 10 22 22 O 1.41383 * 112.89189 * 179.71335 * 21 20 18 23 23 C 1.44216 * 107.58767 * 17.49512 * 22 21 20 24 24 H 1.08999 * 110.97531 * 92.76155 * 23 22 21 25 25 C 1.50701 * 110.97072 * 216.49346 * 23 22 21 26 26 C 1.38233 * 120.00173 * 218.53979 * 25 23 22 27 27 C 1.38236 * 120.00131 * 180.27852 * 26 25 23 28 28 C 1.38237 * 119.99678 * 359.47587 * 27 26 25 29 29 C 1.38226 * 120.00041 * 0.54827 * 28 27 26 30 30 C 1.38235 * 119.99778 * 38.57307 * 25 23 22 31 31 C 1.51684 * 125.86394 * 173.79399 * 20 18 10 32 32 H 0.97003 * 119.99645 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47587 * 59.99529 * 9 7 2 34 34 H 1.09006 * 109.46776 * 299.99767 * 9 7 2 35 35 H 1.08997 * 109.46432 * 30.00761 * 11 10 9 36 36 H 1.09001 * 109.46799 * 150.00040 * 11 10 9 37 37 H 1.08000 * 120.78940 * 0.02562 * 13 12 11 38 38 H 1.07995 * 120.41560 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.61620 * 179.97438 * 15 14 13 40 40 H 1.08005 * 119.61545 * 180.30488 * 17 16 15 41 41 H 1.08004 * 119.99685 * 0.02562 * 26 25 23 42 42 H 1.07998 * 119.99708 * 179.72756 * 27 26 25 43 43 H 1.07998 * 119.99413 * 180.27599 * 28 27 26 44 44 H 1.08001 * 119.99842 * 179.72257 * 29 28 27 45 45 H 1.07998 * 120.00279 * 359.97438 * 30 25 23 46 46 H 1.08999 * 110.79557 * 46.31440 * 31 20 18 47 47 H 1.08995 * 110.79664 * 282.84372 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 4.3798 -3.2170 1.2633 12 6 5.8409 -2.9666 1.5340 13 6 6.2405 -1.8504 2.2533 14 6 7.5952 -1.6609 2.4786 15 6 8.4962 -2.5840 1.9818 16 7 8.0800 -3.6341 1.3017 17 6 6.7990 -3.8495 1.0736 18 6 4.0995 -3.2559 -1.1569 19 8 4.4384 -4.4231 -1.1491 20 6 3.7970 -2.5837 -2.4356 21 7 3.3214 -1.3919 -2.5690 22 8 3.1425 -1.0193 -3.9211 23 6 3.1579 -2.2256 -4.7112 24 1 2.1483 -2.6103 -4.8558 25 6 3.8387 -1.9943 -6.0356 26 6 3.3451 -2.5918 -7.1802 27 6 3.9730 -2.3842 -8.3941 28 6 5.0881 -1.5703 -8.4652 29 6 5.5819 -0.9732 -7.3206 30 6 4.9572 -1.1850 -6.1057 31 6 3.9911 -3.1759 -3.8185 32 1 -0.4850 0.8401 0.0004 33 1 3.8746 -0.6801 0.8911 34 1 3.8752 -0.6806 -0.8889 35 1 3.7833 -2.8023 2.0759 36 1 4.2019 -4.2901 1.1930 37 1 5.5135 -1.1460 2.6298 38 1 7.9422 -0.8025 3.0346 39 1 9.5533 -2.4433 2.1527 40 1 6.4956 -4.7236 0.5166 41 1 2.4712 -3.2242 -7.1254 42 1 3.5899 -2.8547 -9.2876 43 1 5.5759 -1.4046 -9.4143 44 1 6.4558 -0.3409 -7.3754 45 1 5.3429 -0.7182 -5.2115 46 1 3.5987 -4.1918 -3.8630 47 1 5.0425 -3.1532 -4.1051 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069617748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = 54.872398 kcal Electronic energy + Delta-G solvation = -32479.057839 eV Core-core repulsion = 28208.072659 eV Total energy + Delta-G solvation = -4270.985180 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.95280 -41.24509 -40.40491 -39.54675 -37.19530 -34.91628 -34.41651 -33.51428 -33.41459 -32.59245 -31.84574 -30.09002 -29.85918 -27.93880 -25.40423 -24.95486 -24.50693 -23.99466 -23.52405 -22.65956 -22.07440 -20.02105 -19.15054 -18.45881 -18.25350 -18.00285 -17.67254 -17.22471 -16.92081 -16.73454 -16.58767 -16.19323 -15.91231 -15.66960 -15.45462 -15.06209 -14.74134 -14.61824 -14.42295 -14.31032 -14.27052 -14.17777 -14.06307 -13.93369 -13.79118 -13.40188 -13.25734 -13.01390 -12.91942 -12.58028 -12.49477 -12.15734 -12.10973 -11.98865 -11.78486 -11.55088 -11.34343 -10.79778 -10.76617 -10.66111 -10.46933 -10.01909 -9.87582 -9.76139 -9.66461 -8.27893 -6.31003 -0.04936 0.09087 0.27282 0.31554 0.44786 1.34130 1.42908 1.43948 1.66663 1.94762 2.12592 2.35663 2.76811 2.87740 3.10353 3.12576 3.27999 3.49362 3.52067 3.64214 3.80726 3.83415 3.85939 4.06240 4.07519 4.10484 4.12038 4.24866 4.27457 4.43939 4.49227 4.56059 4.59582 4.61283 4.63285 4.71341 4.74122 4.85834 4.97626 4.98899 5.10974 5.18560 5.30859 5.41967 5.47948 5.50389 5.56597 5.58588 5.76473 6.03464 6.05037 6.09105 6.35953 6.68886 6.90555 6.99724 7.32817 8.88576 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007525 B = 0.003595 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.059936 B = 7787.137480 C = 9953.058971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.035 3.965 3 Si 0.924 3.076 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.235 1.235 7 C -0.515 4.515 8 H 0.031 0.969 9 C 0.209 3.791 10 N -0.568 5.568 11 C 0.158 3.842 12 C -0.160 4.160 13 C -0.068 4.068 14 C -0.167 4.167 15 C 0.091 3.909 16 N -0.512 5.512 17 C 0.105 3.895 18 C 0.586 3.414 19 O -0.551 6.551 20 C 0.029 3.971 21 N -0.214 5.214 22 O -0.211 6.211 23 C 0.081 3.919 24 H 0.101 0.899 25 C -0.101 4.101 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.114 4.114 29 C -0.126 4.126 30 C -0.115 4.115 31 C -0.109 4.109 32 H 0.265 0.735 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.127 -3.148 -8.300 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.164 4.164 3 Si 0.749 3.251 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.158 1.158 7 C -0.553 4.553 8 H 0.049 0.951 9 C 0.087 3.913 10 N -0.297 5.297 11 C 0.036 3.964 12 C -0.164 4.164 13 C -0.095 4.095 14 C -0.187 4.187 15 C -0.066 4.066 16 N -0.220 5.220 17 C -0.051 4.051 18 C 0.371 3.629 19 O -0.429 6.429 20 C -0.165 4.165 21 N 0.041 4.959 22 O -0.232 6.232 23 C 0.023 3.977 24 H 0.119 0.881 25 C -0.102 4.102 26 C -0.128 4.128 27 C -0.138 4.138 28 C -0.132 4.132 29 C -0.144 4.144 30 C -0.133 4.133 31 C -0.148 4.148 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.202 0.798 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.401 -3.161 -8.149 17.708 hybrid contribution -1.063 0.769 0.046 1.313 sum 14.338 -2.392 -8.102 16.641 Atomic orbital electron populations 1.70020 1.08136 1.27938 1.52080 1.25455 0.95103 1.02185 0.93651 0.86062 0.80299 0.79811 0.78973 1.20275 1.20945 1.15803 1.21189 0.90370 0.92952 1.50836 0.95091 1.20044 0.93725 0.78485 0.99059 1.47958 1.60423 1.15604 1.05752 1.20394 0.90754 0.99713 0.85522 1.21194 0.96884 0.97497 1.00785 1.21876 0.97581 0.95413 0.94604 1.22491 0.92972 1.01720 1.01477 1.23367 1.01915 0.89113 0.92218 1.67739 1.17580 1.22139 1.14586 1.22746 0.88037 0.98608 0.95740 1.17075 0.77979 0.85424 0.82377 1.90713 1.50011 1.15333 1.86886 1.26073 0.97790 0.94931 0.97727 1.79181 1.05792 1.14516 0.96420 1.91309 1.91390 1.28758 1.11721 1.22668 0.99582 0.84939 0.90501 0.88124 1.19508 0.96868 1.00785 0.93001 1.21227 1.00406 0.99491 0.91696 1.21488 0.95901 0.98549 0.97849 1.21592 0.96331 0.96170 0.99129 1.21411 1.00581 1.00297 0.92114 1.21060 0.95477 0.97909 0.98856 1.22820 1.03731 1.02535 0.85727 0.92551 0.93100 0.92789 0.87877 0.88797 0.83582 0.81411 0.79793 0.83325 0.84202 0.82892 0.83033 0.84117 0.87358 0.85867 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 2 C 0.04 1.95 5.47 84.66 0.46 2.42 16 3 Si 0.92 42.55 27.47 68.60 1.88 44.43 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 7 C -0.51 -27.65 8.94 25.60 0.23 -27.42 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.21 9.16 3.83 85.63 0.33 9.49 16 10 N -0.57 -22.41 2.46 -834.24 -2.05 -24.46 16 11 C 0.16 5.16 5.56 85.63 0.48 5.64 16 12 C -0.16 -4.68 5.48 -19.78 -0.11 -4.79 16 13 C -0.07 -1.70 9.86 22.47 0.22 -1.48 16 14 C -0.17 -3.38 10.11 22.36 0.23 -3.15 16 15 C 0.09 1.99 11.18 84.69 0.95 2.93 16 16 N -0.51 -14.59 10.36 -195.84 -2.03 -16.62 16 17 C 0.11 3.17 10.86 84.67 0.92 4.09 16 18 C 0.59 23.50 7.61 86.71 0.66 24.16 16 19 O -0.55 -22.16 16.28 -3.88 -0.06 -22.22 16 20 C 0.03 1.12 7.00 45.76 0.32 1.44 16 21 N -0.21 -9.32 8.25 -42.30 -0.35 -9.67 16 22 O -0.21 -8.54 11.60 -38.30 -0.44 -8.98 16 23 C 0.08 2.51 4.00 30.44 0.12 2.63 16 24 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 25 C -0.10 -2.62 5.04 -19.87 -0.10 -2.72 16 26 C -0.11 -2.28 9.69 22.27 0.22 -2.06 16 27 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 28 C -0.11 -1.86 10.05 22.27 0.22 -1.64 16 29 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 30 C -0.11 -2.95 9.19 22.27 0.20 -2.74 16 31 C -0.11 -3.29 6.42 30.75 0.20 -3.09 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.05 2.08 7.08 -2.39 -0.02 2.06 16 34 H 0.05 2.49 4.81 -2.38 -0.01 2.48 16 35 H 0.10 3.19 8.03 -2.39 -0.02 3.17 16 36 H 0.09 3.03 7.32 -2.39 -0.02 3.01 16 37 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.15 4.64 7.82 -2.91 -0.02 4.61 16 41 H 0.14 2.37 8.05 -2.91 -0.02 2.35 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.11 3.05 7.79 -2.91 -0.02 3.03 16 46 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.12 3.14 7.76 -2.39 -0.02 3.13 16 Total: -1.00 -72.61 401.09 4.18 -68.43 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.94 Total: 26.30 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.99 Total: -0.35 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.13 Total: -107.61 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.51 Total: -31.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.43 kcal Total: -72.61 4.18 -68.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069617748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.306 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds