Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00461 * 2 1 4 4 H 1.48507 * 109.47136 * 270.00518 * 3 2 1 5 5 H 1.48502 * 109.47053 * 30.00291 * 3 2 1 6 6 H 1.48498 * 109.47127 * 150.00315 * 3 2 1 7 7 C 1.37882 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00093 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00050 * 90.00226 * 10 9 7 12 12 O 1.21587 * 120.00076 * 185.91104 * 11 10 9 13 13 N 1.34773 * 119.99721 * 5.90638 * 11 10 9 14 14 C 1.40162 * 119.99994 * 183.22714 * 13 11 10 15 15 C 1.38895 * 119.94323 * 333.29208 * 14 13 11 16 16 C 1.38306 * 119.83541 * 180.02562 * 15 14 13 17 17 C 1.39440 * 119.95506 * 359.97438 * 16 15 14 18 18 C 1.38491 * 120.10597 * 359.97438 * 17 16 15 19 19 C 1.38331 * 119.89457 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.94873 * 180.02562 * 19 18 17 21 21 N 1.40400 * 119.22833 * 179.97438 * 17 16 15 22 22 C 1.35078 * 118.97809 * 15.50476 * 21 17 16 23 23 O 1.21307 * 120.13083 * 181.68782 * 22 21 17 24 24 C 1.50754 * 119.73544 * 1.66040 * 22 21 17 25 25 O 1.36019 * 120.59753 * 180.02562 * 16 15 14 26 26 C 1.46494 * 120.00082 * 269.99543 * 10 9 7 27 27 C 1.53003 * 117.50217 * 196.58811 * 26 10 9 28 28 C 1.53000 * 59.99992 * 252.51512 * 27 26 10 29 29 H 0.97005 * 119.99695 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47312 * 60.00267 * 9 7 2 31 31 H 1.09000 * 109.47301 * 300.00313 * 9 7 2 32 32 H 0.97003 * 120.00608 * 3.22526 * 13 11 10 33 33 H 1.08000 * 120.08253 * 359.97438 * 15 14 13 34 34 H 1.08002 * 120.05450 * 180.02562 * 18 17 16 35 35 H 0.96999 * 120.50810 * 195.22499 * 21 17 16 36 36 H 1.08994 * 109.44269 * 208.59414 * 24 22 21 37 37 H 1.08993 * 109.41575 * 88.67871 * 24 22 21 38 38 H 1.09001 * 115.55383 * 342.30318 * 26 10 9 39 39 H 1.08998 * 117.49740 * 0.02562 * 27 26 10 40 40 H 1.08993 * 117.50217 * 145.02267 * 27 26 10 41 41 H 1.09003 * 117.49298 * 252.50666 * 28 27 26 42 42 H 1.08992 * 117.52290 * 107.48232 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6407 -4.1250 1.1667 12 8 3.5100 -4.9751 1.1695 13 7 2.1149 -3.6949 2.3307 14 6 2.6168 -4.1776 3.5472 15 6 3.2128 -5.4310 3.6027 16 6 3.7068 -5.9053 4.8044 17 6 3.6058 -5.1248 5.9554 18 6 3.0121 -3.8749 5.8973 19 6 2.5183 -3.4014 4.6950 20 17 1.7744 -1.8346 4.6204 21 7 4.1119 -5.6215 7.1672 22 6 4.9525 -6.6785 7.1410 23 8 5.3781 -7.1439 8.1773 24 6 5.3593 -7.2779 5.8189 25 8 4.2939 -7.1302 4.8764 26 6 2.6787 -4.1696 -1.2692 27 6 3.3457 -5.5460 -1.2307 28 6 4.1913 -4.2924 -1.4635 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6245 -2.5571 0.8896 32 1 1.3892 -3.0513 2.3268 33 1 3.2896 -6.0340 2.7101 34 1 2.9347 -3.2709 6.7893 35 1 3.8649 -5.2094 8.0098 36 1 5.5805 -8.3366 5.9532 37 1 6.2468 -6.7662 5.4468 38 1 2.0770 -3.9259 -2.1448 39 1 3.4300 -6.0375 -0.2615 40 1 3.1826 -6.2083 -2.0809 41 1 4.5847 -4.1300 -2.4671 42 1 4.8323 -3.9586 -0.6477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069618893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = -20.261373 kcal Electronic energy + Delta-G solvation = -30764.484583 eV Core-core repulsion = 26351.975415 eV Total energy + Delta-G solvation = -4412.509169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63809 -40.46093 -39.00146 -37.99362 -36.53345 -36.32529 -35.16734 -34.65274 -33.20308 -32.16858 -30.65064 -29.02077 -27.72218 -27.13936 -23.87997 -23.72897 -22.99492 -22.08341 -21.84706 -20.21929 -19.68326 -19.01325 -18.12063 -17.58690 -17.00285 -16.78670 -16.45886 -16.08851 -15.50713 -15.44518 -15.08712 -14.76266 -14.70516 -14.54653 -14.34349 -13.88850 -13.84114 -13.54794 -13.16542 -12.94868 -12.59807 -12.39711 -12.29200 -11.98015 -11.66376 -11.38905 -11.27670 -11.19197 -10.94765 -10.87184 -10.79645 -10.58148 -10.32933 -10.31408 -9.79008 -9.68577 -9.55195 -9.11773 -8.65967 -8.60808 -7.82408 -7.48724 -6.27696 -4.35491 0.81144 1.02743 2.00831 2.10452 2.53516 2.83291 3.15366 3.17816 3.25487 3.30497 3.33966 3.69263 3.77152 4.18688 4.33748 4.42579 4.55321 4.67287 4.82453 4.93339 5.02066 5.05961 5.34267 5.42154 5.48058 5.61061 5.65114 5.73655 5.84987 6.09660 6.14701 6.19202 6.31052 6.50060 6.54938 6.61298 6.76016 6.90787 6.98286 7.11375 7.18403 7.50503 7.56142 7.67681 7.91076 8.31769 8.72165 8.97029 9.33419 10.78541 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.003397 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.315077 B = 8240.814616 C =10123.296557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.241 3.759 10 N -0.577 5.577 11 C 0.711 3.289 12 O -0.589 6.589 13 N -0.672 5.672 14 C 0.213 3.787 15 C -0.117 4.117 16 C 0.105 3.895 17 C 0.065 3.935 18 C -0.089 4.089 19 C -0.073 4.073 20 Cl -0.042 7.042 21 N -0.654 5.654 22 C 0.492 3.508 23 O -0.520 6.520 24 C 0.050 3.950 25 O -0.296 6.296 26 C 0.103 3.897 27 C -0.201 4.201 28 C -0.187 4.187 29 H 0.266 0.734 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.423 0.577 33 H 0.181 0.819 34 H 0.145 0.855 35 H 0.415 0.585 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 -9.627 8.425 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.121 3.879 10 N -0.308 5.308 11 C 0.414 3.586 12 O -0.471 6.471 13 N -0.320 5.320 14 C 0.112 3.888 15 C -0.139 4.139 16 C 0.057 3.943 17 C -0.031 4.031 18 C -0.111 4.111 19 C -0.104 4.104 20 Cl -0.013 7.013 21 N -0.301 5.301 22 C 0.279 3.721 23 O -0.395 6.395 24 C -0.028 4.028 25 O -0.210 6.210 26 C -0.002 4.002 27 C -0.238 4.238 28 C -0.226 4.226 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.198 0.802 34 H 0.162 0.838 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.077 -10.421 8.602 14.435 hybrid contribution -0.080 2.160 0.495 2.218 sum 4.997 -8.261 9.098 13.266 Atomic orbital electron populations 1.69908 1.05955 1.27479 1.49473 1.24910 0.94836 0.99278 0.94528 0.86525 0.79977 0.82856 0.78387 1.20417 1.21036 1.19678 1.21455 0.93747 0.90107 1.52283 0.91860 1.19424 0.87270 0.82708 0.98459 1.46857 1.46711 1.35133 1.02060 1.15788 0.81084 0.81268 0.80420 1.90616 1.34654 1.36279 1.85549 1.43056 1.38876 1.47518 1.02526 1.17007 0.96065 0.91148 0.84538 1.20950 1.01591 0.94196 0.97134 1.18410 0.98857 0.85151 0.91845 1.17713 1.04743 0.95254 0.85418 1.20104 1.00103 0.93615 0.97290 1.20363 1.06504 0.89574 0.93975 1.98423 1.80457 1.24010 1.98417 1.43634 1.45903 1.32398 1.08201 1.21555 0.78225 0.79604 0.92697 1.90809 1.53644 1.60337 1.34704 1.23200 0.90512 1.04844 0.84243 1.86280 1.48120 1.27849 1.58721 1.21375 0.94129 0.97926 0.86811 1.23838 1.03811 0.91309 1.04875 1.23150 0.94914 1.02589 1.01923 0.92412 0.93872 0.95211 0.73562 0.80194 0.83775 0.74602 0.83685 0.88112 0.85556 0.84735 0.90103 0.89498 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -13.30 9.39 -34.44 -0.32 -13.62 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.32 5.13 -5.20 -0.03 5.30 16 10 N -0.58 -11.33 2.82 -173.18 -0.49 -11.82 16 11 C 0.71 13.59 7.95 -86.92 -0.69 12.90 16 12 O -0.59 -11.27 9.06 5.29 0.05 -11.22 16 13 N -0.67 -11.82 5.06 -14.15 -0.07 -11.89 16 14 C 0.21 3.32 6.44 -83.55 -0.54 2.78 16 15 C -0.12 -1.74 8.71 -39.31 -0.34 -2.08 16 16 C 0.10 1.37 6.44 -39.11 -0.25 1.11 16 17 C 0.06 0.75 6.55 -83.39 -0.55 0.20 16 18 C -0.09 -1.01 9.72 -39.45 -0.38 -1.40 16 19 C -0.07 -1.02 6.34 -39.30 -0.25 -1.27 16 20 Cl -0.04 -0.62 27.79 -51.86 -1.44 -2.06 16 21 N -0.65 -6.61 5.48 -9.61 -0.05 -6.66 16 22 C 0.49 5.45 7.94 -10.82 -0.09 5.36 16 23 O -0.52 -7.11 17.95 5.53 0.10 -7.01 16 24 C 0.05 0.46 7.17 36.03 0.26 0.72 16 25 O -0.30 -3.55 10.45 -19.80 -0.21 -3.76 16 26 C 0.10 1.80 6.62 -67.93 -0.45 1.35 16 27 C -0.20 -3.14 9.63 -26.73 -0.26 -3.39 16 28 C -0.19 -3.08 9.87 -26.73 -0.26 -3.35 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 30 H 0.04 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.03 0.67 6.11 -51.93 -0.32 0.35 16 32 H 0.42 7.69 5.43 -40.82 -0.22 7.47 16 33 H 0.18 2.92 5.62 -52.49 -0.30 2.62 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.41 3.35 8.89 -40.82 -0.36 2.99 16 36 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 2.04 8.09 -51.93 -0.42 1.62 16 39 H 0.14 2.34 5.23 -52.09 -0.27 2.06 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -28.35 367.84 -9.46 -37.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.36 Total: 12.33 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -4.25 Total: 6.24 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.12 Total: -52.96 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.44 Total: -2.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.35 -9.46 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069618893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.553 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds