Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00461 * 2 1 4 4 H 1.48507 * 109.47136 * 270.00518 * 3 2 1 5 5 H 1.48502 * 109.47053 * 30.00291 * 3 2 1 6 6 H 1.48498 * 109.47127 * 150.00315 * 3 2 1 7 7 C 1.37882 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00093 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00050 * 90.00226 * 10 9 7 12 12 O 1.21587 * 120.00076 * 185.91104 * 11 10 9 13 13 N 1.34773 * 119.99721 * 5.90638 * 11 10 9 14 14 C 1.40162 * 119.99994 * 183.22714 * 13 11 10 15 15 C 1.38895 * 119.94323 * 333.29208 * 14 13 11 16 16 C 1.38306 * 119.83541 * 180.02562 * 15 14 13 17 17 C 1.39440 * 119.95506 * 359.97438 * 16 15 14 18 18 C 1.38491 * 120.10597 * 359.97438 * 17 16 15 19 19 C 1.38331 * 119.89457 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.94873 * 180.02562 * 19 18 17 21 21 N 1.40400 * 119.22833 * 179.97438 * 17 16 15 22 22 C 1.35078 * 118.97809 * 15.50476 * 21 17 16 23 23 O 1.21307 * 120.13083 * 181.68782 * 22 21 17 24 24 C 1.50754 * 119.73544 * 1.66040 * 22 21 17 25 25 O 1.36019 * 120.59753 * 180.02562 * 16 15 14 26 26 C 1.46494 * 120.00082 * 269.99543 * 10 9 7 27 27 C 1.53003 * 117.50217 * 196.58811 * 26 10 9 28 28 C 1.53000 * 59.99992 * 252.51512 * 27 26 10 29 29 H 0.97005 * 119.99695 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47312 * 60.00267 * 9 7 2 31 31 H 1.09000 * 109.47301 * 300.00313 * 9 7 2 32 32 H 0.97003 * 120.00608 * 3.22526 * 13 11 10 33 33 H 1.08000 * 120.08253 * 359.97438 * 15 14 13 34 34 H 1.08002 * 120.05450 * 180.02562 * 18 17 16 35 35 H 0.96999 * 120.50810 * 195.22499 * 21 17 16 36 36 H 1.08994 * 109.44269 * 208.59414 * 24 22 21 37 37 H 1.08993 * 109.41575 * 88.67871 * 24 22 21 38 38 H 1.09001 * 115.55383 * 342.30318 * 26 10 9 39 39 H 1.08998 * 117.49740 * 0.02562 * 27 26 10 40 40 H 1.08993 * 117.50217 * 145.02267 * 27 26 10 41 41 H 1.09003 * 117.49298 * 252.50666 * 28 27 26 42 42 H 1.08992 * 117.52290 * 107.48232 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6407 -4.1250 1.1667 12 8 3.5100 -4.9751 1.1695 13 7 2.1149 -3.6949 2.3307 14 6 2.6168 -4.1776 3.5472 15 6 3.2128 -5.4310 3.6027 16 6 3.7068 -5.9053 4.8044 17 6 3.6058 -5.1248 5.9554 18 6 3.0121 -3.8749 5.8973 19 6 2.5183 -3.4014 4.6950 20 17 1.7744 -1.8346 4.6204 21 7 4.1119 -5.6215 7.1672 22 6 4.9525 -6.6785 7.1410 23 8 5.3781 -7.1439 8.1773 24 6 5.3593 -7.2779 5.8189 25 8 4.2939 -7.1302 4.8764 26 6 2.6787 -4.1696 -1.2692 27 6 3.3457 -5.5460 -1.2307 28 6 4.1913 -4.2924 -1.4635 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6245 -2.5571 0.8896 32 1 1.3892 -3.0513 2.3268 33 1 3.2896 -6.0340 2.7101 34 1 2.9347 -3.2709 6.7893 35 1 3.8649 -5.2094 8.0098 36 1 5.5805 -8.3366 5.9532 37 1 6.2468 -6.7662 5.4468 38 1 2.0770 -3.9259 -2.1448 39 1 3.4300 -6.0375 -0.2615 40 1 3.1826 -6.2083 -2.0809 41 1 4.5847 -4.1300 -2.4671 42 1 4.8323 -3.9586 -0.6477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069618893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -37.016533 kcal Electronic energy + Delta-G solvation = -30765.211142 eV Core-core repulsion = 26351.975415 eV Total energy + Delta-G solvation = -4413.235727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.097 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.63045 -41.79367 -40.07293 -39.04567 -37.78362 -37.40017 -36.50667 -36.01807 -34.71516 -33.76463 -31.66196 -30.07860 -29.04104 -28.55634 -25.18303 -24.79571 -24.64557 -23.33275 -23.14330 -21.26330 -20.94818 -20.03174 -19.20358 -18.71509 -18.61071 -18.16974 -17.73949 -17.16159 -16.76844 -16.56039 -16.50214 -16.23681 -15.85143 -15.71768 -15.43890 -15.07694 -14.90908 -14.72276 -14.53469 -14.28001 -14.02668 -13.84404 -13.51006 -13.28801 -13.00575 -12.95643 -12.66351 -12.45615 -12.36460 -12.29390 -12.16652 -12.06218 -11.83618 -11.44364 -11.29077 -11.14012 -10.68492 -10.65120 -10.46069 -9.69655 -9.24297 -8.69882 -8.20114 -6.34465 -0.24970 -0.00872 0.99967 1.07612 1.39012 1.42369 1.49629 1.58155 1.66090 1.96367 2.25418 2.38914 2.49083 2.85484 2.87788 3.10045 3.21727 3.45934 3.80597 3.97287 4.00297 4.04193 4.17556 4.21183 4.31339 4.38870 4.54346 4.69419 4.79657 4.82579 4.90413 4.92956 4.99897 5.10536 5.25191 5.40148 5.48261 5.61755 5.65100 5.69850 5.79339 6.02454 6.05919 6.13624 6.64468 6.66063 6.91493 7.36108 7.51338 8.83665 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.003397 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.315077 B = 8240.814616 C =10123.296557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.256 3.744 10 N -0.584 5.584 11 C 0.705 3.295 12 O -0.593 6.593 13 N -0.674 5.674 14 C 0.190 3.810 15 C -0.126 4.126 16 C 0.106 3.894 17 C 0.079 3.921 18 C -0.074 4.074 19 C -0.077 4.077 20 Cl -0.052 7.052 21 N -0.645 5.645 22 C 0.494 3.506 23 O -0.545 6.545 24 C 0.047 3.953 25 O -0.304 6.304 26 C 0.079 3.921 27 C -0.180 4.180 28 C -0.185 4.185 29 H 0.268 0.732 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.417 0.583 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.426 0.574 36 H 0.172 0.828 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -10.055 9.258 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.135 3.865 10 N -0.315 5.315 11 C 0.408 3.592 12 O -0.475 6.475 13 N -0.322 5.322 14 C 0.090 3.910 15 C -0.148 4.148 16 C 0.059 3.941 17 C -0.018 4.018 18 C -0.095 4.095 19 C -0.108 4.108 20 Cl -0.023 7.023 21 N -0.294 5.294 22 C 0.282 3.718 23 O -0.422 6.422 24 C -0.030 4.030 25 O -0.219 6.219 26 C -0.026 4.026 27 C -0.217 4.217 28 C -0.224 4.224 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.258 0.742 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.267 0.733 36 H 0.189 0.811 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.101 -10.868 9.462 15.648 hybrid contribution -0.330 2.183 0.330 2.233 sum 5.771 -8.685 9.792 14.304 Atomic orbital electron populations 1.69977 1.06862 1.28117 1.50322 1.25488 0.95459 1.01729 0.94408 0.85735 0.78735 0.79948 0.78389 1.19982 1.20581 1.20028 1.21566 0.93049 0.91439 1.51837 0.93409 1.19057 0.87256 0.82703 0.97489 1.46815 1.46696 1.34823 1.03180 1.15925 0.81212 0.81364 0.80678 1.90624 1.34794 1.36367 1.85747 1.43005 1.38825 1.47433 1.02953 1.17195 0.97506 0.91949 0.84309 1.20724 1.02601 0.94024 0.97433 1.18375 0.98473 0.85612 0.91671 1.17643 1.03830 0.94888 0.85443 1.20355 0.98273 0.93526 0.97358 1.20426 1.06928 0.89096 0.94303 1.98419 1.80736 1.24710 1.98463 1.43583 1.45442 1.32174 1.08152 1.21837 0.77721 0.79313 0.92935 1.90809 1.54628 1.61060 1.35724 1.23528 0.90102 1.06720 0.82686 1.86278 1.48902 1.27138 1.59537 1.21684 0.94931 0.99595 0.86398 1.23777 1.02033 0.90744 1.05172 1.23132 0.93858 1.03102 1.02274 0.92290 0.95081 0.95749 0.74204 0.81912 0.80630 0.73283 0.81063 0.86170 0.84508 0.86454 0.87020 0.87053 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.17 13.29 21.45 0.28 -47.88 16 2 C 0.03 1.54 5.46 84.66 0.46 2.00 16 3 Si 0.95 41.15 29.54 68.60 2.03 43.18 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -27.15 9.39 25.60 0.24 -26.91 16 8 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 9 C 0.26 11.58 5.13 85.63 0.44 12.02 16 10 N -0.58 -23.45 2.82 -820.06 -2.31 -25.77 16 11 C 0.71 27.68 7.95 179.05 1.42 29.10 16 12 O -0.59 -23.23 9.06 -3.99 -0.04 -23.27 16 13 N -0.67 -24.45 5.06 -316.95 -1.60 -26.05 16 14 C 0.19 5.96 6.44 38.13 0.25 6.21 16 15 C -0.13 -3.76 8.71 22.44 0.20 -3.56 16 16 C 0.11 2.64 6.44 22.58 0.15 2.79 16 17 C 0.08 1.65 6.55 38.12 0.25 1.90 16 18 C -0.07 -1.51 9.72 22.35 0.22 -1.30 16 19 C -0.08 -2.08 6.34 22.45 0.14 -1.94 16 20 Cl -0.05 -1.52 27.79 -2.72 -0.08 -1.60 16 21 N -0.65 -11.38 5.48 -302.53 -1.66 -13.04 16 22 C 0.49 9.76 7.94 87.63 0.70 10.45 16 23 O -0.54 -13.79 17.95 -3.11 -0.06 -13.84 16 24 C 0.05 0.74 7.17 71.25 0.51 1.25 16 25 O -0.30 -6.82 10.45 -93.77 -0.98 -7.80 16 26 C 0.08 2.73 6.62 44.99 0.30 3.03 16 27 C -0.18 -5.44 9.63 30.60 0.29 -5.15 16 28 C -0.18 -5.99 9.87 30.59 0.30 -5.69 16 29 H 0.27 13.49 8.31 -92.70 -0.77 12.71 16 30 H 0.03 1.47 8.03 -2.39 -0.02 1.46 16 31 H 0.02 1.14 6.11 -2.39 -0.01 1.13 16 32 H 0.42 15.75 5.43 -92.71 -0.50 15.24 16 33 H 0.16 5.43 5.62 -2.91 -0.02 5.42 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.43 5.66 8.89 -92.71 -0.82 4.84 16 36 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.14 4.37 8.09 -2.39 -0.02 4.35 16 39 H 0.12 4.05 5.23 -4.97 -0.03 4.03 16 40 H 0.11 2.68 8.14 -2.39 -0.02 2.67 16 41 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 Total: -1.00 -61.00 367.84 1.23 -59.77 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.21 Total: 32.08 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.86 Total: 24.21 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -5.29 Total: -112.73 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.07 Total: -44.91 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -61.00 1.23 -59.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069618893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.751 kcal (2) G-P(sol) polarization free energy of solvation -61.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds