Wall clock time and date at job start Tue Mar 31 2020 07:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31596 * 122.22886 * 2 1 4 4 C 1.29984 * 117.12697 * 180.26809 * 3 2 1 5 5 N 1.38751 * 125.35973 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99321 * 180.02562 * 5 4 3 7 7 O 1.21713 * 120.00509 * 359.97438 * 6 5 4 8 8 C 1.46524 * 119.99462 * 180.02562 * 6 5 4 9 9 S 1.75834 * 125.46283 * 359.69266 * 8 6 5 10 10 C 1.70619 * 91.56407 * 179.91368 * 9 8 6 11 11 C 1.33823 * 110.96271 * 0.35473 * 10 9 8 12 12 C 1.36696 * 125.45877 * 179.97438 * 8 6 5 13 13 C 1.50703 * 123.35282 * 359.97438 * 12 8 6 14 14 C 1.53001 * 117.49482 * 188.74447 * 13 12 8 15 15 C 1.53000 * 117.50196 * 120.08442 * 13 12 8 16 16 S 1.76134 * 109.26991 * 0.02562 * 4 3 2 17 17 C 1.34665 * 122.23065 * 180.28575 * 2 1 3 18 18 S 1.76202 * 125.92607 * 359.75213 * 17 2 1 19 19 C 1.76201 * 100.00001 * 180.02562 * 18 17 2 20 20 H 1.08003 * 119.99851 * 0.02562 * 19 18 17 21 21 C 1.38418 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31813 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00189 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47129 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.47120 * 210.00307 * 23 21 19 26 26 H 1.48510 * 109.46739 * 330.00247 * 23 21 19 27 27 H 1.09003 * 109.46966 * 269.70899 * 1 2 3 28 28 H 1.08993 * 109.46698 * 29.71460 * 1 2 3 29 29 H 1.09003 * 109.46905 * 149.71294 * 1 2 3 30 30 H 0.96991 * 120.00430 * 0.02562 * 5 4 3 31 31 H 1.08004 * 124.51546 * 180.02562 * 10 9 8 32 32 H 1.07991 * 122.44689 * 179.70376 * 11 10 9 33 33 H 1.08996 * 115.54813 * 334.40675 * 13 12 8 34 34 H 1.08996 * 117.49739 * 359.97438 * 14 13 12 35 35 H 1.09005 * 117.49979 * 145.01690 * 14 13 12 36 36 H 1.08990 * 117.49794 * 214.97604 * 15 13 12 37 37 H 1.08995 * 117.49488 * 359.97177 * 15 13 12 38 38 H 0.97003 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5035 0.9976 -0.0054 5 7 4.4039 2.0533 -0.0058 6 6 5.7293 1.8084 -0.0123 7 8 6.1363 0.6614 -0.0172 8 6 6.6801 2.9232 -0.0122 9 16 6.2526 4.6288 -0.0118 10 6 7.8956 5.0887 -0.0093 11 6 8.6935 4.0144 -0.0165 12 6 8.0419 2.8040 -0.0178 13 6 8.7575 1.4777 -0.0244 14 6 10.2742 1.4924 0.1761 15 6 9.6871 1.1824 -1.2032 16 16 3.9346 -0.7101 -0.0121 17 6 2.2252 -1.1391 -0.0057 18 16 1.5697 -2.7746 -0.0077 19 6 3.0665 -3.7043 -0.0149 20 1 4.0187 -3.1946 -0.0162 21 6 3.0220 -5.0877 -0.0177 22 7 1.8598 -5.7097 -0.0154 23 14 4.6088 -6.0733 -0.0260 24 1 5.0348 -6.3375 1.3718 25 1 4.3869 -7.3629 -0.7280 26 1 5.6663 -5.3028 -0.7286 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3632 0.8925 -0.5094 29 1 -0.3633 -0.8874 -0.5183 30 1 4.0796 2.9674 -0.0015 31 1 8.2450 6.1106 -0.0078 32 1 9.7706 4.0926 -0.0211 33 1 8.2018 0.6416 0.4001 34 1 10.7544 2.4613 0.3123 35 1 10.7164 0.6657 0.7321 36 1 9.7432 0.1520 -1.5540 37 1 9.7807 1.9472 -1.9741 38 1 1.8286 -6.6793 -0.0170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:15 Heat of formation + Delta-G solvation = 62.531004 kcal Electronic energy + Delta-G solvation = -24414.682978 eV Core-core repulsion = 20795.594743 eV Total energy + Delta-G solvation = -3619.088235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 366.027 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39426 -39.07319 -38.32284 -35.88720 -34.77822 -32.82000 -30.97765 -29.95338 -27.11786 -26.00640 -25.74437 -23.62079 -22.62326 -22.31347 -21.48667 -20.38242 -18.82389 -18.27668 -17.67555 -17.27652 -16.59816 -15.91400 -15.67120 -15.55992 -15.10162 -14.87740 -14.31062 -14.09302 -14.04676 -13.89205 -13.30634 -13.20026 -12.77165 -12.64716 -12.13618 -12.08737 -11.87642 -11.68635 -11.39372 -11.37617 -11.26081 -11.07056 -10.89861 -10.78878 -10.59990 -10.48130 -10.26147 -9.84980 -9.54080 -9.16023 -9.07462 -8.75053 -8.68108 -8.65451 -7.79101 -6.59866 -6.49839 -4.27391 0.13151 1.11129 1.43402 1.50031 1.88483 2.03406 2.53801 2.84578 2.86930 3.08515 3.10569 3.17569 3.35993 3.64728 3.80783 3.98324 4.39364 4.50239 4.66730 4.74361 4.82889 4.88420 4.98291 5.03937 5.17482 5.21060 5.42152 5.57305 5.73601 5.76101 5.93941 5.94634 5.98506 6.11804 6.24221 6.28428 6.45449 6.49674 6.94460 7.14859 7.33428 7.91112 8.04516 8.51156 8.88739 10.45912 Molecular weight = 366.03amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003098 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.526385 B = 9035.790119 C =11473.452681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.020 3.980 3 N -0.474 5.474 4 C 0.187 3.813 5 N -0.611 5.611 6 C 0.586 3.414 7 O -0.490 6.490 8 C -0.264 4.264 9 S 0.203 5.797 10 C -0.222 4.222 11 C -0.148 4.148 12 C 0.021 3.979 13 C -0.109 4.109 14 C -0.176 4.176 15 C -0.160 4.160 16 S 0.206 5.794 17 C -0.251 4.251 18 S 0.151 5.849 19 C -0.556 4.556 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.863 5.863 23 Si 0.924 3.076 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.410 0.590 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 19.714 -0.284 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.195 5.195 4 C -0.183 4.183 5 N -0.259 5.259 6 C 0.372 3.628 7 O -0.366 6.366 8 C -0.384 4.384 9 S 0.472 5.528 10 C -0.360 4.360 11 C -0.179 4.179 12 C 0.005 3.995 13 C -0.129 4.129 14 C -0.213 4.213 15 C -0.198 4.198 16 S 0.450 5.550 17 C -0.488 4.488 18 S 0.401 5.599 19 C -0.705 4.705 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.189 0.811 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.289 18.940 -0.296 21.556 hybrid contribution 2.571 -0.101 0.017 2.573 sum 12.860 18.839 -0.279 22.811 Atomic orbital electron populations 1.20120 0.88006 1.02129 1.01820 1.19033 0.96701 0.84533 1.12007 1.65819 1.02740 1.32460 1.18503 1.23646 0.89814 0.92709 1.12179 1.42143 1.04165 1.08032 1.71609 1.16883 0.80479 0.88153 0.77331 1.90779 1.76547 1.20829 1.48464 1.23987 0.96911 0.96682 1.20852 1.83076 1.05081 0.96623 1.68007 1.25255 0.98252 1.04110 1.08396 1.19860 1.01779 0.90447 1.05826 1.18715 0.90522 0.95006 0.95212 1.21059 0.91527 0.95596 1.04670 1.23067 0.94806 1.03240 1.00159 1.22970 1.02384 1.03090 0.91329 1.85807 1.01704 0.95105 1.72424 1.28788 1.01316 1.06752 1.11936 1.83073 1.11004 0.84360 1.81415 1.23265 0.93600 0.94046 1.59564 0.89313 1.25022 0.98263 0.96666 0.92917 1.70015 1.24397 1.10328 1.44869 0.86038 0.81284 0.78789 0.79024 1.19609 1.20274 1.18862 0.91850 0.91910 0.91026 0.75253 0.81124 0.83571 0.84301 0.88710 0.88184 0.88018 0.88789 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.72 16 2 C 0.02 0.42 6.73 -83.96 -0.57 -0.14 16 3 N -0.47 -9.65 10.55 -9.81 -0.10 -9.75 16 4 C 0.19 3.68 8.39 -87.30 -0.73 2.95 16 5 N -0.61 -9.64 5.39 -13.03 -0.07 -9.71 16 6 C 0.59 9.16 7.74 -12.92 -0.10 9.06 16 7 O -0.49 -9.07 11.80 5.18 0.06 -9.01 16 8 C -0.26 -3.23 6.45 -36.80 -0.24 -3.47 16 9 S 0.20 1.71 22.15 -107.50 -2.38 -0.67 16 10 C -0.22 -1.61 10.92 29.18 0.32 -1.29 16 11 C -0.15 -1.26 9.46 -41.41 -0.39 -1.65 16 12 C 0.02 0.23 5.60 -105.46 -0.59 -0.36 16 13 C -0.11 -1.27 5.44 -91.77 -0.50 -1.77 16 14 C -0.18 -1.54 9.95 -26.69 -0.27 -1.80 16 15 C -0.16 -1.58 10.22 -26.69 -0.27 -1.86 16 16 S 0.21 4.56 18.34 -107.50 -1.97 2.59 16 17 C -0.25 -5.82 6.67 29.47 0.20 -5.62 16 18 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 19 C -0.56 -15.14 9.26 30.80 0.29 -14.85 16 20 H 0.09 2.40 5.97 -52.48 -0.31 2.08 16 21 C 0.08 2.20 5.49 -17.49 -0.10 2.10 16 22 N -0.86 -23.78 13.22 55.47 0.73 -23.05 16 23 Si 0.92 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.26 -5.89 7.11 56.52 0.40 -5.48 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.25 7.38 -51.93 -0.38 0.87 16 30 H 0.41 5.23 7.93 -40.82 -0.32 4.91 16 31 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.15 0.95 6.61 -52.49 -0.35 0.60 16 33 H 0.14 1.99 6.17 -51.93 -0.32 1.67 16 34 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -31.06 363.13 -11.80 -42.87 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.70 Total: 3.47 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.59 Total: -19.40 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.56 Total: -42.51 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.06 Total: -9.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 10.07 SS G_CDS: -6.58 Total: 3.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.06 -11.80 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.398 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds