Wall clock time and date at job start Tue Mar 31 2020 07:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31596 * 122.22886 * 2 1 4 4 C 1.29984 * 117.12697 * 180.26809 * 3 2 1 5 5 N 1.38751 * 125.35973 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99321 * 180.02562 * 5 4 3 7 7 O 1.21713 * 120.00509 * 359.97438 * 6 5 4 8 8 C 1.46524 * 119.99462 * 180.02562 * 6 5 4 9 9 S 1.75834 * 125.46283 * 359.69266 * 8 6 5 10 10 C 1.70619 * 91.56407 * 179.91368 * 9 8 6 11 11 C 1.33823 * 110.96271 * 0.35473 * 10 9 8 12 12 C 1.36696 * 125.45877 * 179.97438 * 8 6 5 13 13 C 1.50703 * 123.35282 * 359.97438 * 12 8 6 14 14 C 1.53001 * 117.49482 * 188.74447 * 13 12 8 15 15 C 1.53000 * 117.50196 * 120.08442 * 13 12 8 16 16 S 1.76134 * 109.26991 * 0.02562 * 4 3 2 17 17 C 1.34665 * 122.23065 * 180.28575 * 2 1 3 18 18 S 1.76202 * 125.92607 * 359.75213 * 17 2 1 19 19 C 1.76201 * 100.00001 * 180.02562 * 18 17 2 20 20 H 1.08003 * 119.99851 * 0.02562 * 19 18 17 21 21 C 1.38418 * 120.00084 * 179.97438 * 19 18 17 22 22 N 1.31813 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00189 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47129 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.47120 * 210.00307 * 23 21 19 26 26 H 1.48510 * 109.46739 * 330.00247 * 23 21 19 27 27 H 1.09003 * 109.46966 * 269.70899 * 1 2 3 28 28 H 1.08993 * 109.46698 * 29.71460 * 1 2 3 29 29 H 1.09003 * 109.46905 * 149.71294 * 1 2 3 30 30 H 0.96991 * 120.00430 * 0.02562 * 5 4 3 31 31 H 1.08004 * 124.51546 * 180.02562 * 10 9 8 32 32 H 1.07991 * 122.44689 * 179.70376 * 11 10 9 33 33 H 1.08996 * 115.54813 * 334.40675 * 13 12 8 34 34 H 1.08996 * 117.49739 * 359.97438 * 14 13 12 35 35 H 1.09005 * 117.49979 * 145.01690 * 14 13 12 36 36 H 1.08990 * 117.49794 * 214.97604 * 15 13 12 37 37 H 1.08995 * 117.49488 * 359.97177 * 15 13 12 38 38 H 0.97003 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5035 0.9976 -0.0054 5 7 4.4039 2.0533 -0.0058 6 6 5.7293 1.8084 -0.0123 7 8 6.1363 0.6614 -0.0172 8 6 6.6801 2.9232 -0.0122 9 16 6.2526 4.6288 -0.0118 10 6 7.8956 5.0887 -0.0093 11 6 8.6935 4.0144 -0.0165 12 6 8.0419 2.8040 -0.0178 13 6 8.7575 1.4777 -0.0244 14 6 10.2742 1.4924 0.1761 15 6 9.6871 1.1824 -1.2032 16 16 3.9346 -0.7101 -0.0121 17 6 2.2252 -1.1391 -0.0057 18 16 1.5697 -2.7746 -0.0077 19 6 3.0665 -3.7043 -0.0149 20 1 4.0187 -3.1946 -0.0162 21 6 3.0220 -5.0877 -0.0177 22 7 1.8598 -5.7097 -0.0154 23 14 4.6088 -6.0733 -0.0260 24 1 5.0348 -6.3375 1.3718 25 1 4.3869 -7.3629 -0.7280 26 1 5.6663 -5.3028 -0.7286 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3632 0.8925 -0.5094 29 1 -0.3633 -0.8874 -0.5183 30 1 4.0796 2.9674 -0.0015 31 1 8.2450 6.1106 -0.0078 32 1 9.7706 4.0926 -0.0211 33 1 8.2018 0.6416 0.4001 34 1 10.7544 2.4613 0.3123 35 1 10.7164 0.6657 0.7321 36 1 9.7432 0.1520 -1.5540 37 1 9.7807 1.9472 -1.9741 38 1 1.8286 -6.6793 -0.0170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069656802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:11 Heat of formation + Delta-G solvation = 45.067007 kcal Electronic energy + Delta-G solvation = -24415.440274 eV Core-core repulsion = 20795.594743 eV Total energy + Delta-G solvation = -3619.845531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 366.027 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.62279 -40.36323 -39.57988 -36.63699 -36.21084 -34.82494 -32.35160 -30.97143 -28.80439 -27.73383 -26.99718 -24.85224 -23.40249 -23.07824 -22.80712 -21.82457 -20.37661 -19.46192 -19.09074 -18.61700 -17.60673 -17.19622 -17.09523 -17.02582 -16.90405 -15.86139 -15.72251 -15.52077 -15.06784 -14.94390 -14.68589 -14.41275 -14.17736 -13.53040 -13.46842 -13.40397 -13.28486 -13.07688 -12.95173 -12.87209 -12.47870 -12.36904 -12.18412 -12.05397 -11.98528 -11.64011 -11.42625 -11.36993 -11.17206 -10.81576 -10.52642 -10.50055 -9.95231 -9.52049 -9.36915 -8.58460 -8.38231 -6.30720 -0.73507 -0.17274 0.16150 0.36122 0.81270 0.84231 1.19038 1.25578 1.33233 1.38087 1.45446 1.61354 1.66881 2.08329 2.13718 2.80862 3.01592 3.08411 3.44225 3.65064 3.74298 3.86817 4.03566 4.15140 4.27433 4.41851 4.52808 4.62906 4.72661 4.84716 4.85216 4.92732 4.99287 5.03085 5.06419 5.20438 5.26064 5.28867 5.39793 5.47436 5.83197 6.01373 6.64361 6.80557 6.86346 8.49351 Molecular weight = 366.03amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003098 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.526385 B = 9035.790119 C =11473.452681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.224 3.776 5 N -0.605 5.605 6 C 0.584 3.416 7 O -0.524 6.524 8 C -0.314 4.314 9 S 0.243 5.757 10 C -0.194 4.194 11 C -0.162 4.162 12 C 0.028 3.972 13 C -0.140 4.140 14 C -0.151 4.151 15 C -0.161 4.161 16 S 0.167 5.833 17 C -0.280 4.280 18 S 0.105 5.895 19 C -0.577 4.577 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.895 5.895 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.263 1.263 26 H -0.268 1.268 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.427 0.573 31 H 0.211 0.789 32 H 0.172 0.828 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 23.621 -0.297 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.203 5.203 4 C -0.149 4.149 5 N -0.255 5.255 6 C 0.374 3.626 7 O -0.402 6.402 8 C -0.434 4.434 9 S 0.512 5.488 10 C -0.332 4.332 11 C -0.192 4.192 12 C 0.011 3.989 13 C -0.160 4.160 14 C -0.188 4.188 15 C -0.198 4.198 16 S 0.411 5.589 17 C -0.516 4.516 18 S 0.353 5.647 19 C -0.725 4.725 20 H 0.098 0.902 21 C -0.171 4.171 22 N -0.530 5.530 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.187 1.187 26 H -0.192 1.192 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.268 0.732 31 H 0.227 0.773 32 H 0.190 0.810 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.493 22.913 -0.306 26.099 hybrid contribution 2.045 -0.886 0.027 2.229 sum 14.538 22.026 -0.279 26.393 Atomic orbital electron populations 1.20254 0.85470 1.03217 1.03172 1.19718 0.98469 0.84035 1.08224 1.66033 1.02503 1.31574 1.20199 1.23956 0.90146 0.92809 1.07939 1.42280 1.03897 1.07834 1.71530 1.17550 0.80471 0.88884 0.75739 1.90773 1.76889 1.22793 1.49703 1.23772 0.96600 0.97936 1.25055 1.82943 1.05857 0.92996 1.66976 1.25795 0.97242 1.05628 1.04566 1.20012 1.03180 0.89292 1.06719 1.18951 0.90351 0.95791 0.93806 1.20963 0.93134 0.95304 1.06621 1.23183 0.92290 1.04652 0.98638 1.23023 1.01777 1.03083 0.91956 1.86008 1.02241 0.97504 1.73130 1.28628 1.01624 1.06145 1.15177 1.82865 1.11103 0.85983 1.84794 1.23448 0.93887 0.94870 1.60295 0.90208 1.25868 1.01382 0.97391 0.92451 1.70089 1.26099 1.10767 1.46017 0.85149 0.77275 0.77662 0.79371 1.18777 1.18724 1.19216 0.90230 0.89449 0.91243 0.73219 0.77254 0.81043 0.88052 0.86012 0.87932 0.88946 0.87453 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 10.02 71.24 0.71 -1.40 16 2 C 0.04 1.57 6.73 41.78 0.28 1.85 16 3 N -0.48 -19.23 10.55 -184.95 -1.95 -21.18 16 4 C 0.22 8.82 8.39 179.19 1.50 10.32 16 5 N -0.60 -18.73 5.39 -313.35 -1.69 -20.42 16 6 C 0.58 18.41 7.74 86.40 0.67 19.08 16 7 O -0.52 -20.31 11.80 -4.39 -0.05 -20.36 16 8 C -0.31 -7.29 6.45 24.07 0.16 -7.13 16 9 S 0.24 3.29 22.15 -56.49 -1.25 2.03 16 10 C -0.19 -1.84 10.92 66.82 0.73 -1.11 16 11 C -0.16 -2.10 9.46 21.08 0.20 -1.90 16 12 C 0.03 0.58 5.60 -20.41 -0.11 0.46 16 13 C -0.14 -3.25 5.44 -11.54 -0.06 -3.31 16 14 C -0.15 -2.35 9.95 30.62 0.30 -2.05 16 15 C -0.16 -3.04 10.22 30.62 0.31 -2.72 16 16 S 0.17 7.70 18.34 -56.49 -1.04 6.66 16 17 C -0.28 -13.44 6.67 67.00 0.45 -13.00 16 18 S 0.10 5.54 20.74 -56.49 -1.17 4.37 16 19 C -0.58 -32.99 9.26 67.86 0.63 -32.36 16 20 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 21 C 0.04 2.01 5.49 84.74 0.46 2.48 16 22 N -0.90 -51.04 13.22 21.59 0.29 -50.76 16 23 Si 0.98 43.57 29.55 68.60 2.03 45.60 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 2.44 7.38 -2.39 -0.02 2.42 16 30 H 0.43 10.21 7.93 -92.71 -0.74 9.47 16 31 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.17 1.33 6.61 -2.92 -0.02 1.31 16 33 H 0.10 3.13 6.17 -2.39 -0.01 3.12 16 34 H 0.12 1.23 6.56 -2.39 -0.02 1.22 16 35 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.28 14.80 8.32 -92.71 -0.77 14.03 16 Total: -1.00 -71.88 363.13 1.80 -70.07 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.41 Total: 14.76 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 6.23 Total: -30.79 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.36 Total: -92.35 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 16.53 SS G_CDS: -3.46 Total: 13.07 kcal Total: -71.88 1.80 -70.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.140 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds